Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:37:29 (2706043): wrapper (7.7.26015): starting
14:37:29 (2706043): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 14:37:29] Arguments: --nthreads 4
[2025-06-05 14:37:29] Threads: 4
[2025-06-05 14:37:29] Checking for CVMFS
[2025-06-05 14:37:29] No cvmfs_config command found, will try listing directly
[2025-06-05 14:37:29] CVMFS is ok
[2025-06-05 14:37:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 14:37:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 14:37:29] Further information can be found at the LHC@home message board.
[2025-06-05 14:37:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 14:37:29] Checking for apptainer binary...
[2025-06-05 14:37:29] which: no apptainer in ((null))
[2025-06-05 14:37:29] apptainer is not installed, using version from CVMFS
[2025-06-05 14:37:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 14:37:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-06-05 14:37:30] apptainer works
[2025-06-05 14:37:30] Set ATHENA_PROC_NUMBER=4
[2025-06-05 14:37:30] Set ATHENA_CORE_NUMBER=4
[2025-06-05 14:37:30] Starting ATLAS job with PandaID=6678074763
[2025-06-05 14:37:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 17:15:09]  *** The last 200 lines of the pilot log: ***
[2025-06-05 17:15:09] 2025-06-05 15:14:26,261 | INFO     | monitor loop #689: job 0:6678074763 is in state 'finished'
[2025-06-05 17:15:09] 2025-06-05 15:14:26,261 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 17:15:09] 2025-06-05 15:14:28,763 | INFO     | monitor loop #690: job 0:6678074763 is in state 'finished'
[2025-06-05 17:15:09] 2025-06-05 15:14:28,764 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 17:15:09] 2025-06-05 15:14:31,144 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 17:15:09] 2025-06-05 15:14:31,145 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6678074763/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 17:15:09] 2025-06-05 15:14:31,145 | INFO     | extracted standard info from prmon json
[2025-06-05 17:15:09] 2025-06-05 15:14:31,145 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 17:15:09] 2025-06-05 15:14:31,146 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 17:15:09] 2025-06-05 15:14:31,146 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 17:15:09] 2025-06-05 15:14:31,146 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 17:15:09] 2025-06-05 15:14:31,149 | INFO     | fitting pss+swap vs Time
[2025-06-05 17:15:09] 2025-06-05 15:14:31,150 | INFO     | sum of square deviations: 1132458442.5
[2025-06-05 17:15:09] 2025-06-05 15:14:31,151 | INFO     | sum of deviations: 3710910843.9999967
[2025-06-05 17:15:09] 2025-06-05 15:14:31,151 | INFO     | mean x: 1749131754.5
[2025-06-05 17:15:09] 2025-06-05 15:14:31,151 | INFO     | mean y: 2337381.948051948
[2025-06-05 17:15:09] 2025-06-05 15:14:31,151 | INFO     | -- intersect: -5729327244.110656
[2025-06-05 17:15:09] 2025-06-05 15:14:31,151 | INFO     | intersect: -5729327244.110656
[2025-06-05 17:15:09] 2025-06-05 15:14:31,151 | INFO     | chi2: 1.6800990005984746
[2025-06-05 17:15:09] 2025-06-05 15:14:31,152 | INFO     | sum of square deviations: 1025693650.0
[2025-06-05 17:15:09] 2025-06-05 15:14:31,152 | INFO     | sum of deviations: 3695221765.999998
[2025-06-05 17:15:09] 2025-06-05 15:14:31,152 | INFO     | mean x: 1749131602.0
[2025-06-05 17:15:09] 2025-06-05 15:14:31,153 | INFO     | mean y: 2337359.9060402685
[2025-06-05 17:15:09] 2025-06-05 15:14:31,153 | INFO     | -- intersect: -6299182755.099884
[2025-06-05 17:15:09] 2025-06-05 15:14:31,153 | INFO     | intersect: -6299182755.099884
[2025-06-05 17:15:09] 2025-06-05 15:14:31,153 | INFO     | chi2: 1.6812121586545588
[2025-06-05 17:15:09] 2025-06-05 15:14:31,153 | INFO     | current chi2=1.6812121586545588 (change=-0.06625550373445957 %)
[2025-06-05 17:15:09] 2025-06-05 15:14:31,153 | INFO     | right removable region: 148
[2025-06-05 17:15:09] 2025-06-05 15:14:31,153 | INFO     | sum of square deviations: 1025693650.0
[2025-06-05 17:15:09] 2025-06-05 15:14:31,155 | INFO     | sum of deviations: -19507886742.00001
[2025-06-05 17:15:09] 2025-06-05 15:14:31,155 | INFO     | mean x: 1749131907.0
[2025-06-05 17:15:09] 2025-06-05 15:14:31,155 | INFO     | mean y: 2370072.2147651007
[2025-06-05 17:15:09] 2025-06-05 15:14:31,155 | INFO     | -- intersect: 33269483638.311718
[2025-06-05 17:15:09] 2025-06-05 15:14:31,155 | INFO     | intersect: 33269483638.311718
[2025-06-05 17:15:09] 2025-06-05 15:14:31,156 | INFO     | chi2: 0.08820967832001182
[2025-06-05 17:15:09] 2025-06-05 15:14:31,156 | INFO     | current chi2=0.08820967832001182 (change=94.74973330210955 %)
[2025-06-05 17:15:09] 2025-06-05 15:14:31,156 | INFO     | sum of square deviations: 925859220.0
[2025-06-05 17:15:09] 2025-06-05 15:14:31,157 | INFO     | sum of deviations: -18211628232.5
[2025-06-05 17:15:09] 2025-06-05 15:14:31,157 | INFO     | mean x: 1749132059.5
[2025-06-05 17:15:09] 2025-06-05 15:14:31,157 | INFO     | mean y: 2368051.534722222
[2025-06-05 17:15:09] 2025-06-05 15:14:31,157 | INFO     | -- intersect: 34407752918.967445
[2025-06-05 17:15:09] 2025-06-05 15:14:31,157 | INFO     | intersect: 34407752918.967445
[2025-06-05 17:15:09] 2025-06-05 15:14:31,157 | INFO     | chi2: 0.08371757028411064
[2025-06-05 17:15:09] 2025-06-05 15:14:31,157 | INFO     | current chi2=0.08371757028411064 (change=5.092534199710454 %)
[2025-06-05 17:15:09] 2025-06-05 15:14:31,158 | INFO     | left removable region: 20
[2025-06-05 17:15:09] 2025-06-05 15:14:31,158 | INFO     | sum of square deviations: 650252192.0
[2025-06-05 17:15:09] 2025-06-05 15:14:31,158 | INFO     | sum of deviations: -11303480621.0
[2025-06-05 17:15:09] 2025-06-05 15:14:31,158 | INFO     | mean x: 1749132181.5
[2025-06-05 17:15:09] 2025-06-05 15:14:31,159 | INFO     | mean y: 2357981.859375
[2025-06-05 17:15:09] 2025-06-05 15:14:31,159 | INFO     | -- intersect: 30407917486.92092
[2025-06-05 17:15:09] 2025-06-05 15:14:31,159 | INFO     | intersect: 30407917486.92092
[2025-06-05 17:15:09] 2025-06-05 15:14:31,159 | INFO     | chi2: 0.07145744488670454
[2025-06-05 17:15:09] 2025-06-05 15:14:31,159 | INFO     | -- intersect: 30407917486.92092
[2025-06-05 17:15:09] 2025-06-05 15:14:31,159 | INFO     | current memory leak: -17.38 B/s (using 128 data points, chi2=0.07)
[2025-06-05 17:15:09] 2025-06-05 15:14:31,160 | INFO     | ..............................
[2025-06-05 17:15:09] 2025-06-05 15:14:31,160 | INFO     | . Timing measurements:
[2025-06-05 17:15:09] 2025-06-05 15:14:31,160 | INFO     | . get job = 0 s
[2025-06-05 17:15:09] 2025-06-05 15:14:31,160 | INFO     | . initial setup = 1 s
[2025-06-05 17:15:09] 2025-06-05 15:14:31,160 | INFO     | . payload setup = 7 s
[2025-06-05 17:15:09] 2025-06-05 15:14:31,160 | INFO     | . stage-in = 0 s
[2025-06-05 17:15:09] 2025-06-05 15:14:31,160 | INFO     | . payload execution = 9370 s
[2025-06-05 17:15:09] 2025-06-05 15:14:31,160 | INFO     | . stage-out = 0 s
[2025-06-05 17:15:09] 2025-06-05 15:14:31,160 | INFO     | . log creation = 0 s
[2025-06-05 17:15:09] 2025-06-05 15:14:31,160 | INFO     | ..............................
[2025-06-05 17:15:09] 2025-06-05 15:14:31,272 | INFO     | 
[2025-06-05 17:15:09] 2025-06-05 15:14:31,272 | INFO     | job summary report
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | --------------------------------------------------
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | PanDA job id: 6678074763
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | task id: 45006595
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | errors: (none)
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | pilot state: finished 
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | transexitcode: 0
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | exeerrorcode: 0
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | exeerrordiag: 
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | exitcode: 0
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | exitmsg: OK
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | cpuconsumptiontime: 35559 s
[2025-06-05 17:15:09] 2025-06-05 15:14:31,273 | INFO     | nevents: 400
[2025-06-05 17:15:09] 2025-06-05 15:14:31,274 | INFO     | neventsw: 0
[2025-06-05 17:15:09] 2025-06-05 15:14:31,274 | INFO     | pid: 2716697
[2025-06-05 17:15:09] 2025-06-05 15:14:31,274 | INFO     | pgrp: 2716697
[2025-06-05 17:15:09] 2025-06-05 15:14:31,274 | INFO     | corecount: 4
[2025-06-05 17:15:09] 2025-06-05 15:14:31,274 | INFO     | event service: False
[2025-06-05 17:15:09] 2025-06-05 15:14:31,274 | INFO     | sizes: {0: 2397182, 1: 2397381, 5: 2397587, 11: 2397643, 9381: 2425908, 9382: 2434871, 9385: 2435055, 9395: 2435225}
[2025-06-05 17:15:09] 2025-06-05 15:14:31,274 | INFO     | --------------------------------------------------
[2025-06-05 17:15:09] 2025-06-05 15:14:31,274 | INFO     | 
[2025-06-05 17:15:09] 2025-06-05 15:14:31,274 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2025-06-05 17:15:09] 2025-06-05 15:14:31,294 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,295 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,295 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,295 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,295 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,295 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,295 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,295 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,295 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,295 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,295 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,296 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,296 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,296 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,296 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,296 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,296 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,296 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 17:15:09] 2025-06-05 15:14:31,296 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,296 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 17:15:09] 2025-06-05 15:14:31,296 | INFO     | job 6678074763 has completed (purged errors)
[2025-06-05 17:15:09] 2025-06-05 15:14:31,297 | INFO     | overall cleanup function is called
[2025-06-05 17:15:09] 2025-06-05 15:14:32,303 | INFO     | --- collectZombieJob: --- 10, [2716697]
[2025-06-05 17:15:09] 2025-06-05 15:14:32,304 | INFO     | zombie collector waiting for pid 2716697
[2025-06-05 17:15:09] 2025-06-05 15:14:32,304 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 17:15:09] 2025-06-05 15:14:32,304 | INFO     | collected zombie processes
[2025-06-05 17:15:09] 2025-06-05 15:14:32,304 | INFO     | will attempt to kill all subprocesses of pid=2716697
[2025-06-05 17:15:09] 2025-06-05 15:14:32,628 | INFO     | process IDs to be killed: [2716697] (in reverse order)
[2025-06-05 17:15:09] 2025-06-05 15:14:32,729 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 17:15:09] 2025-06-05 15:14:32,729 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 17:15:09] 2025-06-05 15:14:32,739 | INFO     | did not find any defunct processes belonging to 2716697
[2025-06-05 17:15:09] 2025-06-05 15:14:32,750 | INFO     | did not find any defunct processes belonging to 2716697
[2025-06-05 17:15:09] 2025-06-05 15:14:32,750 | INFO     | ready for new job
[2025-06-05 17:15:09] 2025-06-05 15:14:32,750 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 17:15:09] 2025-06-05 15:14:32,752 | INFO     | **************************************
[2025-06-05 17:15:09] 2025-06-05 15:14:32,752 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 17:15:09] 2025-06-05 15:14:32,753 | INFO     | **************************************
[2025-06-05 17:15:09] 2025-06-05 15:14:32,753 | INFO     | 
[2025-06-05 17:15:09] 2025-06-05 15:14:32,756 | INFO     | architecture information:
[2025-06-05 17:15:09] 2025-06-05 15:14:32,756 | INFO     | executing command: cat /etc/os-release
[2025-06-05 17:15:09] 2025-06-05 15:14:32,771 | INFO     | cat /etc/os-release:
[2025-06-05 17:15:09] NAME="CentOS Linux"
[2025-06-05 17:15:09] VERSION="7 (Core)"
[2025-06-05 17:15:09] ID="centos"
[2025-06-05 17:15:09] ID_LIKE="rhel fedora"
[2025-06-05 17:15:09] VERSION_ID="7"
[2025-06-05 17:15:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 17:15:09] ANSI_COLOR="0;31"
[2025-06-05 17:15:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 17:15:09] HOME_URL="https://www.centos.org/"
[2025-06-05 17:15:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 17:15:09] 
[2025-06-05 17:15:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 17:15:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 17:15:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 17:15:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 17:15:09] 
[2025-06-05 17:15:09] 2025-06-05 15:14:32,772 | INFO     | **************************************
[2025-06-05 17:15:09] 2025-06-05 15:14:33,275 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2025-06-05 17:15:09] 2025-06-05 15:14:33,292 | INFO     | sufficient remaining disk space (674841493504 B)
[2025-06-05 17:15:09] 2025-06-05 15:14:33,292 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 17:15:09] 2025-06-05 15:14:33,292 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 17:15:09] 2025-06-05 15:14:33,292 | INFO     | update_server=False
[2025-06-05 17:15:09] 2025-06-05 15:14:33,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 17:15:09] 2025-06-05 15:14:33,306 | INFO     | PID=2709721 has CPU usage=12.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-05 17:15:09] 2025-06-05 15:14:33,306 | INFO     | .. there are 6 such processes running
[2025-06-05 17:15:09] 2025-06-05 15:14:33,306 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 17:15:09] 2025-06-05 15:14:33,306 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 17:15:09] 2025-06-05 15:14:33,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 17:15:09] 2025-06-05 15:14:33,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 17:15:09] 2025-06-05 15:14:33,713 | INFO     | all payload control threads have been joined
[2025-06-05 17:15:09] 2025-06-05 15:14:33,770 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 17:15:09] 2025-06-05 15:14:33,770 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 17:15:09] 2025-06-05 15:14:33,770 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:15:09] 2025-06-05 15:14:33,770 | INFO     | will abort loop
[2025-06-05 17:15:09] 2025-06-05 15:14:34,194 | INFO     | all job control threads have been joined
[2025-06-05 17:15:09] 2025-06-05 15:14:34,195 | INFO     | all data control threads have been joined
[2025-06-05 17:15:09] 2025-06-05 15:14:34,296 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:34,297 | INFO     | [job] retrieve thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:34,647 | INFO     | [data] copytool_in thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:34,702 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:34,716 | INFO     | [payload] control thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:34,776 | INFO     | [job] job monitor thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:35,198 | INFO     | [job] control thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:35,200 | INFO     | [data] control thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:35,241 | INFO     | [payload] validate_post thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:35,253 | INFO     | [job] validate thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:35,448 | INFO     | [payload] failed_post thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:35,555 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:35,579 | INFO     | [data] copytool_out thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:35,668 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:36,270 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 17:15:09] 2025-06-05 15:14:36,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 17:15:09] 2025-06-05 15:14:37,275 | INFO     | [job] queue monitor thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:40,297 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 17:15:09] 2025-06-05 15:14:40,525 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22402222663488)>', '<ExcThread(monitor, started 22401981048576)>']
[2025-06-05 17:15:09] 2025-06-05 15:14:41,340 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 17:15:09] 2025-06-05 15:14:41,341 | INFO     | [monitor] control thread has ended
[2025-06-05 17:15:09] 2025-06-05 15:14:45,550 | INFO     | all workflow threads have been joined
[2025-06-05 17:15:09] 2025-06-05 15:14:45,551 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 17:15:09] 2025-06-05 15:14:45,551 | INFO     | traces error code: 0
[2025-06-05 17:15:09] 2025-06-05 15:14:45,551 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 17:15:09] 2025-06-05 15:14:45,708 [wrapper] ==== pilot stdout END ====
[2025-06-05 17:15:09] 2025-06-05 15:14:45,710 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 17:15:09] 2025-06-05 15:14:45,713 [wrapper] pilotpid: 2709721
[2025-06-05 17:15:09] 2025-06-05 15:14:45,715 [wrapper] Pilot exit status: 0
[2025-06-05 17:15:09] 2025-06-05 15:14:45,726 [wrapper] pandaids: 6678074763
[2025-06-05 17:15:09] 2025-06-05 15:14:45,796 [wrapper] cleanup supervisor_pilot 2985072 2709722
[2025-06-05 17:15:09] 2025-06-05 15:14:45,799 [wrapper] Test setup, not cleaning
[2025-06-05 17:15:09] 2025-06-05 15:14:45,802 [wrapper] apfmon messages muted
[2025-06-05 17:15:09] 2025-06-05 15:14:45,804 [wrapper] ==== wrapper stdout END ====
[2025-06-05 17:15:09] 2025-06-05 15:14:45,807 [wrapper] ==== wrapper stderr END ====
[2025-06-05 17:15:09]  *** Error codes and diagnostics ***
[2025-06-05 17:15:09]     "exeErrorCode": 0,
[2025-06-05 17:15:09]     "exeErrorDiag": "",
[2025-06-05 17:15:09]     "pilotErrorCode": 0,
[2025-06-05 17:15:09]     "pilotErrorDiag": "",
[2025-06-05 17:15:09]  *** Listing of results directory ***
[2025-06-05 17:15:09] total 390220
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc    495897 Jun  3 23:15 pilot3.tar.gz
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc      5111 Jun  3 23:36 queuedata.json
[2025-06-05 17:15:09] -rwx------ 1 boinc boinc     37140 Jun  3 23:37 runpilot2-wrapper.sh
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc       100 Jun  5 14:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 17:15:09] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 14:37 run_atlas
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc       105 Jun  5 14:37 job.xml
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc      6634 Jun  5 14:37 init_data.xml
[2025-06-05 17:15:09] -rw-r--r-- 2 boinc boinc 215736956 Jun  5 14:37 EVNT.45006593._001847.pool.root.1
[2025-06-05 17:15:09] -rw-r--r-- 2 boinc boinc     15093 Jun  5 14:37 start_atlas.sh
[2025-06-05 17:15:09] drwxrwx--x 2 boinc boinc      4096 Jun  5 14:37 shared
[2025-06-05 17:15:09] -rw-r--r-- 2 boinc boinc    508881 Jun  5 14:37 input.tar.gz
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc         0 Jun  5 14:37 boinc_lockfile
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc      2525 Jun  5 14:37 pandaJob.out
[2025-06-05 17:15:09] -rw------- 1 boinc boinc    983210 Jun  5 14:37 agis_schedconf.cvmfs.json
[2025-06-05 17:15:09] -rw------- 1 boinc boinc   1598969 Jun  5 14:37 agis_ddmendpoints.agis.ALL.json
[2025-06-05 17:15:09] drwx------ 4 boinc boinc      4096 Jun  5 14:37 pilot3
[2025-06-05 17:15:09] -rw------- 1 boinc boinc 177642656 Jun  5 17:13 HITS.45006595._046050.pool.root.1
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc       528 Jun  5 17:13 boinc_task_state.xml
[2025-06-05 17:15:09] -rw------- 1 boinc boinc      1034 Jun  5 17:14 memory_monitor_summary.json
[2025-06-05 17:15:09] -rw------- 1 boinc boinc        95 Jun  5 17:14 pilot_heartbeat.json
[2025-06-05 17:15:09] -rw------- 1 boinc boinc    293346 Jun  5 17:14 log.45006595._046050.job.log.tgz.1
[2025-06-05 17:15:09] -rw------- 1 boinc boinc      7723 Jun  5 17:14 heartbeat.json
[2025-06-05 17:15:09] -rw------- 1 boinc boinc      4944 Jun  5 17:14 pilotlog.txt
[2025-06-05 17:15:09] -rw------- 1 boinc boinc    892851 Jun  5 17:14 log.45006595._046050.job.log.1
[2025-06-05 17:15:09] -rw------- 1 boinc boinc       357 Jun  5 17:14 output.list
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc       620 Jun  5 17:14 runtime_log
[2025-06-05 17:15:09] -rw------- 1 boinc boinc   1208320 Jun  5 17:14 result.tar.gz
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc      9025 Jun  5 17:14 runtime_log.err
[2025-06-05 17:15:09] -rw------- 1 boinc boinc       662 Jun  5 17:14 2x8KDmqUog7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSFmKDmgk96rm.diag
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc        27 Jun  5 17:14 wrapper_checkpoint.txt
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc      8192 Jun  5 17:15 boinc_mmap_file
[2025-06-05 17:15:09] -rw-r--r-- 1 boinc boinc     20922 Jun  5 17:15 stderr.txt
[2025-06-05 17:15:09] HITS file was successfully produced:
[2025-06-05 17:15:09] -rw------- 1 boinc boinc 177642656 Jun  5 17:13 shared/HITS.pool.root.1
[2025-06-05 17:15:09]  *** Contents of shared directory: ***
[2025-06-05 17:15:09] total 385868
[2025-06-05 17:15:09] -rw-r--r-- 2 boinc boinc 215736956 Jun  5 14:37 ATLAS.root_0
[2025-06-05 17:15:09] -rw-r--r-- 2 boinc boinc     15093 Jun  5 14:37 start_atlas.sh
[2025-06-05 17:15:09] -rw-r--r-- 2 boinc boinc    508881 Jun  5 14:37 input.tar.gz
[2025-06-05 17:15:09] -rw------- 1 boinc boinc 177642656 Jun  5 17:13 HITS.pool.root.1
[2025-06-05 17:15:09] -rw------- 1 boinc boinc   1208320 Jun  5 17:14 result.tar.gz
17:15:11 (2706043): run_atlas exited; CPU time 35909.884444
17:15:11 (2706043): called boinc_finish(0)

</stderr_txt>
]]>

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