Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:27:31 (26763): wrapper (7.7.26015): starting
13:27:31 (26763): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 13:27:31] Arguments: --nthreads 8
[2025-06-04 13:27:31] Threads: 8
[2025-06-04 13:27:31] Checking for CVMFS
[2025-06-04 13:27:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:27:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:27:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:27:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:27:33] 2.11.2.0 19945 33329 96464 146778 1 16 18296645 25165824 2747 130560 0 17440310 99.750 20661358 2160 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 13:27:33] CVMFS is ok
[2025-06-04 13:27:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:27:33] Checking for apptainer binary...
[2025-06-04 13:27:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:27:33] Running /usr/bin/apptainer --version
[2025-06-04 13:27:33] apptainer version 1.3.2-1.el7
[2025-06-04 13:27:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:58:08] cg-vwn324.simple-grid.lan
[2025-06-04 13:58:08] apptainer works
[2025-06-04 13:58:08] Set ATHENA_PROC_NUMBER=8
[2025-06-04 13:58:08] Set ATHENA_CORE_NUMBER=8
[2025-06-04 13:58:08] Starting ATLAS job with PandaID=6678014644
[2025-06-04 13:58:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 17:59:02]  *** The last 200 lines of the pilot log: ***
[2025-06-04 17:59:02] 2025-06-04 15:57:26,986 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 17:59:02] 2025-06-04 15:57:26,986 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 17:59:02] 2025-06-04 15:57:26,991 | INFO     | fitting pss+swap vs Time
[2025-06-04 17:59:02] 2025-06-04 15:57:26,992 | INFO     | sum of square deviations: 3438620752.0
[2025-06-04 17:59:02] 2025-06-04 15:57:26,993 | INFO     | sum of deviations: 85009910307.0
[2025-06-04 17:59:02] 2025-06-04 15:57:26,994 | INFO     | mean x: 1749045774.0
[2025-06-04 17:59:02] 2025-06-04 15:57:26,994 | INFO     | mean y: 2425660.9058295963
[2025-06-04 17:59:02] 2025-06-04 15:57:26,994 | INFO     | -- intersect: -43237650838.98071
[2025-06-04 17:59:02] 2025-06-04 15:57:26,994 | INFO     | intersect: -43237650838.98071
[2025-06-04 17:59:02] 2025-06-04 15:57:26,994 | INFO     | chi2: 6.42274100937669
[2025-06-04 17:59:02] 2025-06-04 15:57:26,995 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 17:59:02] 2025-06-04 15:57:26,996 | INFO     | sum of deviations: 97574575688.00002
[2025-06-04 17:59:02] 2025-06-04 15:57:26,997 | INFO     | mean x: 1749045621.5
[2025-06-04 17:59:02] 2025-06-04 15:57:26,997 | INFO     | mean y: 2433953.990825688
[2025-06-04 17:59:02] 2025-06-04 15:57:26,997 | INFO     | -- intersect: -53122578238.818016
[2025-06-04 17:59:02] 2025-06-04 15:57:26,997 | INFO     | intersect: -53122578238.818016
[2025-06-04 17:59:02] 2025-06-04 15:57:26,997 | INFO     | chi2: 5.701806198381972
[2025-06-04 17:59:02] 2025-06-04 15:57:26,997 | INFO     | current chi2=5.701806198381972 (change=11.224721811796721 %)
[2025-06-04 17:59:02] 2025-06-04 15:57:26,997 | INFO     | right removable region: 217
[2025-06-04 17:59:02] 2025-06-04 15:57:26,998 | INFO     | sum of square deviations: 3212467674.5
[2025-06-04 17:59:02] 2025-06-04 15:57:26,999 | INFO     | sum of deviations: 9427301486.000004
[2025-06-04 17:59:02] 2025-06-04 15:57:27,000 | INFO     | mean x: 1749045926.5
[2025-06-04 17:59:02] 2025-06-04 15:57:27,000 | INFO     | mean y: 2476573.7155963304
[2025-06-04 17:59:02] 2025-06-04 15:57:27,000 | INFO     | -- intersect: -5130270252.925103
[2025-06-04 17:59:02] 2025-06-04 15:57:27,000 | INFO     | intersect: -5130270252.925103
[2025-06-04 17:59:02] 2025-06-04 15:57:27,000 | INFO     | chi2: 1.7900228858302267
[2025-06-04 17:59:02] 2025-06-04 15:57:27,000 | INFO     | current chi2=1.7900228858302267 (change=72.12992267293768 %)
[2025-06-04 17:59:02] 2025-06-04 15:57:27,001 | INFO     | sum of square deviations: 2996454322.0
[2025-06-04 17:59:02] 2025-06-04 15:57:27,002 | INFO     | sum of deviations: -22752911672.0
[2025-06-04 17:59:02] 2025-06-04 15:57:27,002 | INFO     | mean x: 1749046079.0
[2025-06-04 17:59:02] 2025-06-04 15:57:27,003 | INFO     | mean y: 2499178.732394366
[2025-06-04 17:59:02] 2025-06-04 15:57:27,003 | INFO     | -- intersect: 13283492869.69677
[2025-06-04 17:59:02] 2025-06-04 15:57:27,003 | INFO     | intersect: 13283492869.69677
[2025-06-04 17:59:02] 2025-06-04 15:57:27,003 | INFO     | chi2: 0.8458198992266351
[2025-06-04 17:59:02] 2025-06-04 15:57:27,003 | INFO     | current chi2=0.8458198992266351 (change=52.74809579686814 %)
[2025-06-04 17:59:02] 2025-06-04 15:57:27,004 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 17:59:02] 2025-06-04 15:57:27,005 | INFO     | sum of deviations: -27394066629.5
[2025-06-04 17:59:02] 2025-06-04 15:57:27,005 | INFO     | mean x: 1749046231.5
[2025-06-04 17:59:02] 2025-06-04 15:57:27,005 | INFO     | mean y: 2502572.860576923
[2025-06-04 17:59:02] 2025-06-04 15:57:27,005 | INFO     | -- intersect: 17173653532.237312
[2025-06-04 17:59:02] 2025-06-04 15:57:27,006 | INFO     | intersect: 17173653532.237312
[2025-06-04 17:59:02] 2025-06-04 15:57:27,006 | INFO     | chi2: 0.8059066675929246
[2025-06-04 17:59:02] 2025-06-04 15:57:27,006 | INFO     | current chi2=0.8059066675929246 (change=4.718880658897324 %)
[2025-06-04 17:59:02] 2025-06-04 15:57:27,006 | INFO     | left removable region: 30
[2025-06-04 17:59:02] 2025-06-04 15:57:27,006 | INFO     | sum of square deviations: 2027639878.0
[2025-06-04 17:59:02] 2025-06-04 15:57:27,008 | INFO     | sum of deviations: -11660920612.999992
[2025-06-04 17:59:02] 2025-06-04 15:57:27,008 | INFO     | mean x: 1749046506.0
[2025-06-04 17:59:02] 2025-06-04 15:57:27,008 | INFO     | mean y: 2512096.35828877
[2025-06-04 17:59:02] 2025-06-04 15:57:27,008 | INFO     | -- intersect: 10061247218.015339
[2025-06-04 17:59:02] 2025-06-04 15:57:27,008 | INFO     | intersect: 10061247218.015339
[2025-06-04 17:59:02] 2025-06-04 15:57:27,016 | INFO     | chi2: 0.014613727417718984
[2025-06-04 17:59:02] 2025-06-04 15:57:27,016 | INFO     | -- intersect: 10061247218.015339
[2025-06-04 17:59:02] 2025-06-04 15:57:27,016 | INFO     | current memory leak: -5.75 B/s (using 187 data points, chi2=0.01)
[2025-06-04 17:59:02] 2025-06-04 15:57:27,017 | INFO     | ..............................
[2025-06-04 17:59:02] 2025-06-04 15:57:27,017 | INFO     | . Timing measurements:
[2025-06-04 17:59:02] 2025-06-04 15:57:27,017 | INFO     | . get job = 0 s
[2025-06-04 17:59:02] 2025-06-04 15:57:27,018 | INFO     | . initial setup = 4 s
[2025-06-04 17:59:02] 2025-06-04 15:57:27,018 | INFO     | . payload setup = 173 s
[2025-06-04 17:59:02] 2025-06-04 15:57:27,018 | INFO     | . stage-in = 0 s
[2025-06-04 17:59:02] 2025-06-04 15:57:27,018 | INFO     | . payload execution = 13699 s
[2025-06-04 17:59:02] 2025-06-04 15:57:27,018 | INFO     | . stage-out = 3 s
[2025-06-04 17:59:02] 2025-06-04 15:57:27,018 | INFO     | . log creation = 1 s
[2025-06-04 17:59:02] 2025-06-04 15:57:27,018 | INFO     | ..............................
[2025-06-04 17:59:02] 2025-06-04 15:57:27,193 | INFO     | 
[2025-06-04 17:59:02] 2025-06-04 15:57:27,194 | INFO     | job summary report
[2025-06-04 17:59:02] 2025-06-04 15:57:27,194 | INFO     | --------------------------------------------------
[2025-06-04 17:59:02] 2025-06-04 15:57:27,194 | INFO     | PanDA job id: 6678014644
[2025-06-04 17:59:02] 2025-06-04 15:57:27,194 | INFO     | task id: 45006595
[2025-06-04 17:59:02] 2025-06-04 15:57:27,194 | INFO     | errors: (none)
[2025-06-04 17:59:02] 2025-06-04 15:57:27,194 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 17:59:02] 2025-06-04 15:57:27,195 | INFO     | pilot state: finished 
[2025-06-04 17:59:02] 2025-06-04 15:57:27,195 | INFO     | transexitcode: 0
[2025-06-04 17:59:02] 2025-06-04 15:57:27,195 | INFO     | exeerrorcode: 0
[2025-06-04 17:59:02] 2025-06-04 15:57:27,195 | INFO     | exeerrordiag: 
[2025-06-04 17:59:02] 2025-06-04 15:57:27,195 | INFO     | exitcode: 0
[2025-06-04 17:59:02] 2025-06-04 15:57:27,195 | INFO     | exitmsg: OK
[2025-06-04 17:59:02] 2025-06-04 15:57:27,195 | INFO     | cpuconsumptiontime: 50900 s
[2025-06-04 17:59:02] 2025-06-04 15:57:27,195 | INFO     | nevents: 400
[2025-06-04 17:59:02] 2025-06-04 15:57:27,195 | INFO     | neventsw: 0
[2025-06-04 17:59:02] 2025-06-04 15:57:27,195 | INFO     | pid: 28557
[2025-06-04 17:59:02] 2025-06-04 15:57:27,196 | INFO     | pgrp: 28557
[2025-06-04 17:59:02] 2025-06-04 15:57:27,196 | INFO     | corecount: 8
[2025-06-04 17:59:02] 2025-06-04 15:57:27,196 | INFO     | event service: False
[2025-06-04 17:59:02] 2025-06-04 15:57:27,196 | INFO     | sizes: {0: 2397115, 1: 2397199, 2: 2397398, 12: 2397398, 23: 2397426, 34: 2397454, 45: 2397610, 55: 2397638, 66: 2397666, 77: 2397694, 88: 2397750, 92: 2398264, 98
[2025-06-04 17:59:02] 2025-06-04 15:57:27,196 | INFO     | --------------------------------------------------
[2025-06-04 17:59:02] 2025-06-04 15:57:27,196 | INFO     | 
[2025-06-04 17:59:02] 2025-06-04 15:57:27,196 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 17:59:02] 2025-06-04 15:57:27,613 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,613 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,613 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,613 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,613 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,614 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,614 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,614 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,614 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,614 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,614 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,614 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,614 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,615 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,615 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,615 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,615 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,615 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 17:59:02] 2025-06-04 15:57:27,615 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,615 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 17:59:02] 2025-06-04 15:57:27,615 | INFO     | job 6678014644 has completed (purged errors)
[2025-06-04 17:59:02] 2025-06-04 15:57:27,616 | INFO     | overall cleanup function is called
[2025-06-04 17:59:02] 2025-06-04 15:57:28,626 | INFO     | --- collectZombieJob: --- 10, [28557]
[2025-06-04 17:59:02] 2025-06-04 15:57:28,626 | INFO     | zombie collector waiting for pid 28557
[2025-06-04 17:59:02] 2025-06-04 15:57:28,626 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 17:59:02] 2025-06-04 15:57:28,626 | INFO     | collected zombie processes
[2025-06-04 17:59:02] 2025-06-04 15:57:28,626 | INFO     | will attempt to kill all subprocesses of pid=28557
[2025-06-04 17:59:02] 2025-06-04 15:57:28,782 | INFO     | process IDs to be killed: [28557] (in reverse order)
[2025-06-04 17:59:02] 2025-06-04 15:57:29,194 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 17:59:02] 2025-06-04 15:57:29,195 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 17:59:02] 2025-06-04 15:57:29,198 | INFO     | did not find any defunct processes belonging to 28557
[2025-06-04 17:59:02] 2025-06-04 15:57:29,210 | INFO     | did not find any defunct processes belonging to 28557
[2025-06-04 17:59:02] 2025-06-04 15:57:29,210 | INFO     | ready for new job
[2025-06-04 17:59:02] 2025-06-04 15:57:29,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 17:59:02] 2025-06-04 15:57:29,212 | INFO     | **************************************
[2025-06-04 17:59:02] 2025-06-04 15:57:29,213 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 17:59:02] 2025-06-04 15:57:29,213 | INFO     | **************************************
[2025-06-04 17:59:02] 2025-06-04 15:57:29,213 | INFO     | 
[2025-06-04 17:59:02] 2025-06-04 15:57:29,213 | INFO     | pilot is running in a VM
[2025-06-04 17:59:02] 2025-06-04 15:57:29,214 | INFO     | architecture information:
[2025-06-04 17:59:02] 2025-06-04 15:57:29,225 | INFO     | executing command: cat /etc/os-release
[2025-06-04 17:59:02] 2025-06-04 15:57:29,350 | INFO     | cat /etc/os-release:
[2025-06-04 17:59:02] NAME="CentOS Linux"
[2025-06-04 17:59:02] VERSION="7 (Core)"
[2025-06-04 17:59:02] ID="centos"
[2025-06-04 17:59:02] ID_LIKE="rhel fedora"
[2025-06-04 17:59:02] VERSION_ID="7"
[2025-06-04 17:59:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 17:59:02] ANSI_COLOR="0;31"
[2025-06-04 17:59:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 17:59:02] HOME_URL="https://www.centos.org/"
[2025-06-04 17:59:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 17:59:02] 
[2025-06-04 17:59:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 17:59:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 17:59:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 17:59:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 17:59:02] 
[2025-06-04 17:59:02] 2025-06-04 15:57:29,350 | INFO     | **************************************
[2025-06-04 17:59:02] 2025-06-04 15:57:29,854 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 17:59:02] 2025-06-04 15:57:30,017 | INFO     | sufficient remaining disk space (497124638720 B)
[2025-06-04 17:59:02] 2025-06-04 15:57:30,018 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 17:59:02] 2025-06-04 15:57:30,018 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 17:59:02] 2025-06-04 15:57:30,018 | INFO     | update_server=False
[2025-06-04 17:59:02] 2025-06-04 15:57:30,018 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 17:59:02] 2025-06-04 15:57:30,019 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 17:59:02] 2025-06-04 15:57:30,097 | INFO     | all data control threads have been joined
[2025-06-04 17:59:02] 2025-06-04 15:57:30,221 | INFO     | PID=17955 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 17:59:02] 2025-06-04 15:57:30,222 | INFO     | .. there are 9 such processes running
[2025-06-04 17:59:02] 2025-06-04 15:57:30,222 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 17:59:02] 2025-06-04 15:57:30,222 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 17:59:02] 2025-06-04 15:57:30,222 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 17:59:02] 2025-06-04 15:57:30,264 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 17:59:02] 2025-06-04 15:57:30,265 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 17:59:02] 2025-06-04 15:57:30,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:59:02] 2025-06-04 15:57:30,265 | INFO     | will abort loop
[2025-06-04 17:59:02] 2025-06-04 15:57:30,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 17:59:02] 2025-06-04 15:57:30,717 | INFO     | all payload control threads have been joined
[2025-06-04 17:59:02] 2025-06-04 15:57:31,024 | INFO     | [job] retrieve thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:31,087 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:31,102 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:31,104 | INFO     | [data] control thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:31,133 | INFO     | all job control threads have been joined
[2025-06-04 17:59:02] 2025-06-04 15:57:31,136 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:31,271 | INFO     | [job] job monitor thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:31,506 | INFO     | [job] validate thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:31,598 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:31,615 | INFO     | [payload] failed_post thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:31,724 | INFO     | [payload] control thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:31,816 | INFO     | [payload] validate_post thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:32,140 | INFO     | [job] control thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:32,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 17:59:02] 2025-06-04 15:57:32,219 | INFO     | [data] copytool_in thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:32,376 | INFO     | [data] copytool_out thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:33,214 | INFO     | [job] queue monitor thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:34,028 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 17:59:02] 2025-06-04 15:57:35,323 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140011038943040)>', '<ExcThread(monitor, started 140010590283520)>']
[2025-06-04 17:59:02] 2025-06-04 15:57:36,258 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 17:59:02] 2025-06-04 15:57:36,259 | INFO     | [monitor] control thread has ended
[2025-06-04 17:59:02] 2025-06-04 15:57:40,348 | INFO     | all workflow threads have been joined
[2025-06-04 17:59:02] 2025-06-04 15:57:40,349 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 17:59:02] 2025-06-04 15:57:40,349 | INFO     | traces error code: 0
[2025-06-04 17:59:02] 2025-06-04 15:57:40,349 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 17:59:02] 2025-06-04 15:57:40,651 [wrapper] ==== pilot stdout END ====
[2025-06-04 17:59:02] 2025-06-04 15:57:40,738 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 17:59:02] 2025-06-04 15:57:40,862 [wrapper] pilotpid: 17955
[2025-06-04 17:59:02] 2025-06-04 15:57:40,983 [wrapper] Pilot exit status: 0
[2025-06-04 17:59:02] 2025-06-04 15:57:41,467 [wrapper] pandaids: 6678014644
[2025-06-04 17:59:02] 2025-06-04 15:57:42,215 [wrapper] cleanup supervisor_pilot  4590 17956
[2025-06-04 17:59:02] 2025-06-04 15:57:42,274 [wrapper] Test setup, not cleaning
[2025-06-04 17:59:02] 2025-06-04 15:57:42,328 [wrapper] apfmon messages muted
[2025-06-04 17:59:02] 2025-06-04 15:57:42,376 [wrapper] ==== wrapper stdout END ====
[2025-06-04 17:59:02] 2025-06-04 15:57:42,423 [wrapper] ==== wrapper stderr END ====
[2025-06-04 17:59:02]  *** Error codes and diagnostics ***
[2025-06-04 17:59:02]     "exeErrorCode": 0,
[2025-06-04 17:59:02]     "exeErrorDiag": "",
[2025-06-04 17:59:02]     "pilotErrorCode": 0,
[2025-06-04 17:59:02]     "pilotErrorDiag": "",
[2025-06-04 17:59:02]  *** Listing of results directory ***
[2025-06-04 17:59:02] total 387588
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc    495897 Jun  3 21:41 pilot3.tar.gz
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc      5111 Jun  3 21:57 queuedata.json
[2025-06-04 17:59:02] -rwx------. 1 boinc boinc     37140 Jun  3 21:58 runpilot2-wrapper.sh
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc       100 Jun  4 13:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 17:59:02] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 13:27 run_atlas
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc       105 Jun  4 13:27 job.xml
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc      6390 Jun  4 13:27 init_data.xml
[2025-06-04 17:59:02] -rw-r--r--. 2 boinc boinc 213593363 Jun  4 13:27 EVNT.45006593._001773.pool.root.1
[2025-06-04 17:59:02] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:27 start_atlas.sh
[2025-06-04 17:59:02] drwxrwx--x. 2 boinc boinc        68 Jun  4 13:27 shared
[2025-06-04 17:59:02] -rw-r--r--. 2 boinc boinc    508881 Jun  4 13:27 input.tar.gz
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc         0 Jun  4 13:27 boinc_lockfile
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc      2525 Jun  4 13:58 pandaJob.out
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc    986812 Jun  4 14:01 agis_schedconf.cvmfs.json
[2025-06-04 17:59:02] drwx------. 4 boinc boinc      4096 Jun  4 14:01 pilot3
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc 176307967 Jun  4 17:54 HITS.45006595._044247.pool.root.1
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc       531 Jun  4 17:54 boinc_task_state.xml
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc      1013 Jun  4 17:55 memory_monitor_summary.json
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc   1598969 Jun  4 17:55 agis_ddmendpoints.agis.ALL.json
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc    378625 Jun  4 17:55 log.45006595._044247.job.log.tgz.1
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc        95 Jun  4 17:56 pilot_heartbeat.json
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc      7691 Jun  4 17:57 heartbeat.json
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc      4994 Jun  4 17:57 pilotlog.txt
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc   1206575 Jun  4 17:57 log.45006595._044247.job.log.1
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc       357 Jun  4 17:57 output.list
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc       620 Jun  4 17:57 runtime_log
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc   1607680 Jun  4 17:57 result.tar.gz
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc       657 Jun  4 17:57 tN1LDmQxmg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmuoZKDmqNv70m.diag
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc      8659 Jun  4 17:57 runtime_log.err
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc      8192 Jun  4 17:59 boinc_mmap_file
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc        28 Jun  4 17:59 wrapper_checkpoint.txt
[2025-06-04 17:59:02] -rw-r--r--. 1 boinc boinc     20547 Jun  4 17:59 stderr.txt
[2025-06-04 17:59:02] HITS file was successfully produced:
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc 176307967 Jun  4 17:54 shared/HITS.pool.root.1
[2025-06-04 17:59:02]  *** Contents of shared directory: ***
[2025-06-04 17:59:02] total 382852
[2025-06-04 17:59:02] -rw-r--r--. 2 boinc boinc 213593363 Jun  4 13:27 ATLAS.root_0
[2025-06-04 17:59:02] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:27 start_atlas.sh
[2025-06-04 17:59:02] -rw-r--r--. 2 boinc boinc    508881 Jun  4 13:27 input.tar.gz
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc 176307967 Jun  4 17:54 HITS.pool.root.1
[2025-06-04 17:59:02] -rw-------. 1 boinc boinc   1607680 Jun  4 17:57 result.tar.gz
17:59:04 (26763): run_atlas exited; CPU time 51099.566032
17:59:04 (26763): called boinc_finish(0)

</stderr_txt>
]]>

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