Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:17:59 (3684): wrapper (7.7.26015): starting
22:17:59 (3684): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 22:17:59] Arguments: --nthreads 12
[2025-06-03 22:17:59] Threads: 12
[2025-06-03 22:17:59] Checking for CVMFS
[2025-06-03 22:17:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 22:17:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 22:17:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 22:18:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 22:18:00] 2.11.2.0 2981 35025 87096 146764 0 56 18028486 20275200 1 130560 0 15930063 99.982 6612971 7877 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 22:18:00] CVMFS is ok
[2025-06-03 22:18:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 22:18:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 22:18:00] Further information can be found at the LHC@home message board.
[2025-06-03 22:18:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 22:18:00] Checking for apptainer binary...
[2025-06-03 22:18:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 22:18:00] Running /usr/bin/apptainer --version
[2025-06-03 22:18:00] apptainer version 1.3.2-1.el7
[2025-06-03 22:18:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 22:18:01] c-205-30.aglt2.org
[2025-06-03 22:18:01] apptainer works
[2025-06-03 22:18:01] Set ATHENA_PROC_NUMBER=12
[2025-06-03 22:18:01] Set ATHENA_CORE_NUMBER=12
[2025-06-03 22:18:01] Starting ATLAS job with PandaID=6677976663
[2025-06-03 22:18:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:22:32]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:22:32]  is_altstaged=None
[2025-06-03 23:22:32]  is_tar=False
[2025-06-03 23:22:32]  lfn=log.45006595._043389.job.log.tgz.1
[2025-06-03 23:22:32]  mtime=0
[2025-06-03 23:22:32]  protocol_id=None
[2025-06-03 23:22:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 23:22:32]  replicas=None
[2025-06-03 23:22:32]  scope=mc23_13p6TeV
[2025-06-03 23:22:32]  status=None
[2025-06-03 23:22:32]  status_code=0
[2025-06-03 23:22:32]  storage_token=
[2025-06-03 23:22:32]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677976663/log.45006595._043389.job.log.tgz.1
[2025-06-03 23:22:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/61/log.45006595._043389.job.log.tgz.1
[2025-06-03 23:22:32]  workdir=None
[2025-06-03 23:22:32] ]
[2025-06-03 23:22:32] 2025-06-04 03:22:03,847 | INFO     | transferring file log.45006595._043389.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677976663/log.45006595._043389.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 23:22:32] 2025-06-04 03:22:03,847 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677976663/log.45006595._043389.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._043389.job
[2025-06-03 23:22:32] 2025-06-04 03:22:03,869 | INFO     | adding to output.list: log.45006595._043389.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/61/log.45006595._043389.job.log.tg
[2025-06-03 23:22:32] 2025-06-04 03:22:03,870 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 23:22:32] 2025-06-04 03:22:03,870 | INFO     | summary of transferred files:
[2025-06-03 23:22:32] 2025-06-04 03:22:03,870 | INFO     |  -- lfn=log.45006595._043389.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 23:22:32] 2025-06-04 03:22:03,870 | INFO     | stage-out finished correctly
[2025-06-03 23:22:32] 2025-06-04 03:22:05,287 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 23:22:32] 2025-06-04 03:22:05,504 | INFO     | monitor loop #290: job 0:6677976663 is in state 'finished'
[2025-06-03 23:22:32] 2025-06-04 03:22:05,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:22:32] 2025-06-04 03:22:07,324 | INFO     | PID=7330 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-03 23:22:32] 2025-06-04 03:22:07,325 | INFO     | job 6677976663 has state=finished
[2025-06-03 23:22:32] 2025-06-04 03:22:07,325 | INFO     | preparing for final server update for job 6677976663 in state='finished'
[2025-06-03 23:22:32] 2025-06-04 03:22:07,326 | INFO     | this job has now completed (state=finished)
[2025-06-03 23:22:32] 2025-06-04 03:22:07,326 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 23:22:32] 2025-06-04 03:22:07,326 | INFO     | log transfer has been attempted: DONE
[2025-06-03 23:22:32] 2025-06-04 03:22:07,326 | INFO     | job 6677976663 has finished - writing final server update
[2025-06-03 23:22:32] 2025-06-04 03:22:07,327 | INFO     | total number of processed events: 400 (read)
[2025-06-03 23:22:32] 2025-06-04 03:22:07,328 | INFO     | executing command: lscpu
[2025-06-03 23:22:32] 2025-06-04 03:22:07,355 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 23:22:32] 2025-06-04 03:22:08,007 | INFO     | monitor loop #291: job 0:6677976663 is in state 'finished'
[2025-06-03 23:22:32] 2025-06-04 03:22:08,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:22:32] 2025-06-04 03:22:10,521 | INFO     | monitor loop #292: job 0:6677976663 is in state 'finished'
[2025-06-03 23:22:32] 2025-06-04 03:22:10,521 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:22:32] 2025-06-04 03:22:11,894 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-03 23:22:32] 2025-06-04 03:22:11,895 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677976663/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:22:32] 2025-06-04 03:22:11,896 | INFO     | extracted standard info from prmon json
[2025-06-03 23:22:32] 2025-06-04 03:22:11,896 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:22:32] 2025-06-04 03:22:11,896 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:22:32] 2025-06-04 03:22:11,896 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:22:32] 2025-06-04 03:22:11,896 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:22:32] 2025-06-04 03:22:11,898 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:22:32] 2025-06-04 03:22:11,898 | INFO     | sum of square deviations: 54438230.0
[2025-06-03 23:22:32] 2025-06-04 03:22:11,898 | INFO     | sum of deviations: -353655551.99999994
[2025-06-03 23:22:32] 2025-06-04 03:22:11,898 | INFO     | mean x: 1749005507.5
[2025-06-03 23:22:32] 2025-06-04 03:22:11,898 | INFO     | mean y: 2922069.1428571427
[2025-06-03 23:22:32] 2025-06-04 03:22:11,898 | INFO     | -- intersect: 11365258945.377674
[2025-06-03 23:22:32] 2025-06-04 03:22:11,899 | INFO     | intersect: 11365258945.377674
[2025-06-03 23:22:32] 2025-06-04 03:22:11,899 | INFO     | chi2: 0.07167199767037044
[2025-06-03 23:22:32] 2025-06-04 03:22:11,899 | INFO     | -- intersect: 11365258945.377674
[2025-06-03 23:22:32] 2025-06-04 03:22:11,899 | INFO     | current memory leak: -6.50 B/s (using 56 data points, chi2=0.07)
[2025-06-03 23:22:32] 2025-06-04 03:22:11,899 | INFO     | ..............................
[2025-06-03 23:22:32] 2025-06-04 03:22:11,900 | INFO     | . Timing measurements:
[2025-06-03 23:22:32] 2025-06-04 03:22:11,900 | INFO     | . get job = 0 s
[2025-06-03 23:22:32] 2025-06-04 03:22:11,900 | INFO     | . initial setup = 2 s
[2025-06-03 23:22:32] 2025-06-04 03:22:11,900 | INFO     | . payload setup = 9 s
[2025-06-03 23:22:32] 2025-06-04 03:22:11,900 | INFO     | . stage-in = 0 s
[2025-06-03 23:22:32] 2025-06-04 03:22:11,900 | INFO     | . payload execution = 3798 s
[2025-06-03 23:22:32] 2025-06-04 03:22:11,900 | INFO     | . stage-out = 0 s
[2025-06-03 23:22:32] 2025-06-04 03:22:11,900 | INFO     | . log creation = 0 s
[2025-06-03 23:22:32] 2025-06-04 03:22:11,900 | INFO     | ..............................
[2025-06-03 23:22:32] 2025-06-04 03:22:11,984 | INFO     | 
[2025-06-03 23:22:32] 2025-06-04 03:22:11,984 | INFO     | job summary report
[2025-06-03 23:22:32] 2025-06-04 03:22:11,984 | INFO     | --------------------------------------------------
[2025-06-03 23:22:32] 2025-06-04 03:22:11,984 | INFO     | PanDA job id: 6677976663
[2025-06-03 23:22:32] 2025-06-04 03:22:11,984 | INFO     | task id: 45006595
[2025-06-03 23:22:32] 2025-06-04 03:22:11,984 | INFO     | errors: (none)
[2025-06-03 23:22:32] 2025-06-04 03:22:11,985 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:22:32] 2025-06-04 03:22:11,985 | INFO     | pilot state: finished 
[2025-06-03 23:22:32] 2025-06-04 03:22:11,985 | INFO     | transexitcode: 0
[2025-06-03 23:22:32] 2025-06-04 03:22:11,985 | INFO     | exeerrorcode: 0
[2025-06-03 23:22:32] 2025-06-04 03:22:11,985 | INFO     | exeerrordiag: 
[2025-06-03 23:22:32] 2025-06-04 03:22:11,985 | INFO     | exitcode: 0
[2025-06-03 23:22:32] 2025-06-04 03:22:11,985 | INFO     | exitmsg: OK
[2025-06-03 23:22:32] 2025-06-04 03:22:11,985 | INFO     | cpuconsumptiontime: 40398 s
[2025-06-03 23:22:32] 2025-06-04 03:22:11,985 | INFO     | nevents: 400
[2025-06-03 23:22:32] 2025-06-04 03:22:11,986 | INFO     | neventsw: 0
[2025-06-03 23:22:32] 2025-06-04 03:22:11,986 | INFO     | pid: 13736
[2025-06-03 23:22:32] 2025-06-04 03:22:11,986 | INFO     | pgrp: 13736
[2025-06-03 23:22:32] 2025-06-04 03:22:11,986 | INFO     | corecount: 12
[2025-06-03 23:22:32] 2025-06-04 03:22:11,986 | INFO     | event service: False
[2025-06-03 23:22:32] 2025-06-04 03:22:11,986 | INFO     | sizes: {0: 2405184, 5: 2405390, 11: 2405446, 3811: 2431070, 3813: 2440011, 3814: 2440067, 3821: 2440365}
[2025-06-03 23:22:32] 2025-06-04 03:22:11,986 | INFO     | --------------------------------------------------
[2025-06-03 23:22:32] 2025-06-04 03:22:11,986 | INFO     | 
[2025-06-03 23:22:32] 2025-06-04 03:22:11,986 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 23:22:32] 2025-06-04 03:22:12,008 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,008 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,008 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,009 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,009 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,009 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,009 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,009 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,009 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,010 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,010 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,010 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,010 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,010 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,010 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,010 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,011 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,011 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:22:32] 2025-06-04 03:22:12,011 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,011 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:22:32] 2025-06-04 03:22:12,011 | INFO     | job 6677976663 has completed (purged errors)
[2025-06-03 23:22:32] 2025-06-04 03:22:12,011 | INFO     | overall cleanup function is called
[2025-06-03 23:22:32] 2025-06-04 03:22:13,020 | INFO     | --- collectZombieJob: --- 10, [13736]
[2025-06-03 23:22:32] 2025-06-04 03:22:13,020 | INFO     | zombie collector waiting for pid 13736
[2025-06-03 23:22:32] 2025-06-04 03:22:13,059 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:22:32] 2025-06-04 03:22:13,059 | INFO     | collected zombie processes
[2025-06-03 23:22:32] 2025-06-04 03:22:13,059 | INFO     | will attempt to kill all subprocesses of pid=13736
[2025-06-03 23:22:32] 2025-06-04 03:22:13,150 | INFO     | process IDs to be killed: [13736] (in reverse order)
[2025-06-03 23:22:32] 2025-06-04 03:22:13,203 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:22:32] 2025-06-04 03:22:13,203 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:22:32] 2025-06-04 03:22:13,207 | INFO     | did not find any defunct processes belonging to 13736
[2025-06-03 23:22:32] 2025-06-04 03:22:13,210 | INFO     | did not find any defunct processes belonging to 13736
[2025-06-03 23:22:32] 2025-06-04 03:22:13,210 | INFO     | ready for new job
[2025-06-03 23:22:32] 2025-06-04 03:22:13,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:22:32] 2025-06-04 03:22:13,211 | INFO     | **************************************
[2025-06-03 23:22:32] 2025-06-04 03:22:13,211 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:22:32] 2025-06-04 03:22:13,211 | INFO     | **************************************
[2025-06-03 23:22:32] 2025-06-04 03:22:13,212 | INFO     | 
[2025-06-03 23:22:32] 2025-06-04 03:22:13,212 | INFO     | architecture information:
[2025-06-03 23:22:32] 2025-06-04 03:22:13,213 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:22:32] 2025-06-04 03:22:13,227 | INFO     | cat /etc/os-release:
[2025-06-03 23:22:32] NAME="CentOS Linux"
[2025-06-03 23:22:32] VERSION="7 (Core)"
[2025-06-03 23:22:32] ID="centos"
[2025-06-03 23:22:32] ID_LIKE="rhel fedora"
[2025-06-03 23:22:32] VERSION_ID="7"
[2025-06-03 23:22:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:22:32] ANSI_COLOR="0;31"
[2025-06-03 23:22:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:22:32] HOME_URL="https://www.centos.org/"
[2025-06-03 23:22:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:22:32] 
[2025-06-03 23:22:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:22:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:22:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:22:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:22:32] 
[2025-06-03 23:22:32] 2025-06-04 03:22:13,228 | INFO     | **************************************
[2025-06-03 23:22:32] 2025-06-04 03:22:13,731 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 23:22:32] 2025-06-04 03:22:13,747 | INFO     | sufficient remaining disk space (29410459648 B)
[2025-06-03 23:22:32] 2025-06-04 03:22:13,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:22:32] 2025-06-04 03:22:13,748 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:22:32] 2025-06-04 03:22:13,748 | INFO     | update_server=False
[2025-06-03 23:22:32] 2025-06-04 03:22:13,748 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:22:32] 2025-06-04 03:22:13,748 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:22:32] 2025-06-04 03:22:13,749 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:22:32] 2025-06-04 03:22:13,749 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:22:32] 2025-06-04 03:22:13,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:22:32] 2025-06-04 03:22:13,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:22:32] 2025-06-04 03:22:14,029 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:22:32] 2025-06-04 03:22:14,030 | INFO     | aborting loop
[2025-06-03 23:22:32] 2025-06-04 03:22:14,135 | INFO     | all payload control threads have been joined
[2025-06-03 23:22:32] 2025-06-04 03:22:14,337 | INFO     | all job control threads have been joined
[2025-06-03 23:22:32] 2025-06-04 03:22:14,474 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:22:32] 2025-06-04 03:22:14,487 | INFO     | all data control threads have been joined
[2025-06-03 23:22:32] 2025-06-04 03:22:14,754 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:14,755 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:14,890 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:14,972 | INFO     | [job] validate thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:15,028 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:15,035 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:15,140 | INFO     | [payload] control thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:15,343 | INFO     | [job] control thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:15,492 | INFO     | [data] control thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:15,506 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:15,621 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:15,875 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:22:32] 2025-06-04 03:22:15,903 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:16,035 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:16,479 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:19,881 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:24,243 | INFO     | job.realtimelogging is not enabled
[2025-06-03 23:22:32] 2025-06-04 03:22:25,248 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:22:32] 2025-06-04 03:22:27,203 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140187837056832)>', '<ExcThread(monitor, started 140187254384384)>']
[2025-06-03 23:22:32] 2025-06-04 03:22:27,821 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:22:32] 2025-06-04 03:22:27,821 | INFO     | [monitor] control thread has ended
[2025-06-03 23:22:32] 2025-06-04 03:22:32,228 | INFO     | all workflow threads have been joined
[2025-06-03 23:22:32] 2025-06-04 03:22:32,228 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:22:32] 2025-06-04 03:22:32,228 | INFO     | traces error code: 0
[2025-06-03 23:22:32] 2025-06-04 03:22:32,229 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:22:32] 2025-06-04 03:22:32,313 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:22:32] 2025-06-04 03:22:32,316 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:22:32] 2025-06-04 03:22:32,320 [wrapper] pilotpid: 7330
[2025-06-03 23:22:32] 2025-06-04 03:22:32,324 [wrapper] Pilot exit status: 0
[2025-06-03 23:22:32] 2025-06-04 03:22:32,339 [wrapper] pandaids: 6677976663
[2025-06-03 23:22:32] 2025-06-04 03:22:32,379 [wrapper] cleanup supervisor_pilot 17073 7331
[2025-06-03 23:22:32] 2025-06-04 03:22:32,383 [wrapper] Test setup, not cleaning
[2025-06-03 23:22:32] 2025-06-04 03:22:32,387 [wrapper] apfmon messages muted
[2025-06-03 23:22:32] 2025-06-04 03:22:32,391 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:22:32] 2025-06-04 03:22:32,394 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:22:32]  *** Error codes and diagnostics ***
[2025-06-03 23:22:32]     "exeErrorCode": 0,
[2025-06-03 23:22:32]     "exeErrorDiag": "",
[2025-06-03 23:22:32]     "pilotErrorCode": 0,
[2025-06-03 23:22:32]     "pilotErrorDiag": "",
[2025-06-03 23:22:32]  *** Listing of results directory ***
[2025-06-03 23:22:32] total 393036
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 14:57 pilot3.tar.gz
[2025-06-03 23:22:32] -rwx------ 1 boincer umatlas     37140 Jun  3 15:10 runpilot2-wrapper.sh
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 15:10 queuedata.json
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas       100 Jun  3 22:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:22:32] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 22:17 run_atlas
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas       105 Jun  3 22:17 job.xml
[2025-06-03 23:22:32] -rw-r--r-- 2 boincer umatlas 217944352 Jun  3 22:17 EVNT.45006593._001739.pool.root.1
[2025-06-03 23:22:32] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 22:17 start_atlas.sh
[2025-06-03 23:22:32] drwxrwx--x 2 boincer umatlas      4096 Jun  3 22:17 shared
[2025-06-03 23:22:32] -rw-r--r-- 2 boincer umatlas    508879 Jun  3 22:17 input.tar.gz
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas         0 Jun  3 22:17 boinc_lockfile
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 22:18 pandaJob.out
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas    986077 Jun  3 22:18 agis_schedconf.cvmfs.json
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas   1603667 Jun  3 22:18 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:22:32] drwx------ 4 boincer umatlas      4096 Jun  3 22:18 pilot3
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas      5868 Jun  3 23:19 init_data.xml
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas 179208305 Jun  3 23:21 HITS.45006595._043389.pool.root.1
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas       530 Jun  3 23:21 boinc_task_state.xml
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas      1050 Jun  3 23:21 memory_monitor_summary.json
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas        95 Jun  3 23:22 pilot_heartbeat.json
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas    363857 Jun  3 23:22 log.45006595._043389.job.log.tgz.1
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas      7748 Jun  3 23:22 heartbeat.json
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas        27 Jun  3 23:22 wrapper_checkpoint.txt
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 23:22 boinc_mmap_file
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas      4548 Jun  3 23:22 pilotlog.txt
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas    377744 Jun  3 23:22 log.45006595._043389.job.log.1
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas       357 Jun  3 23:22 output.list
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas       620 Jun  3 23:22 runtime_log
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas    757760 Jun  3 23:22 result.tar.gz
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas      8661 Jun  3 23:22 runtime_log.err
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas       659 Jun  3 23:22 5EIKDmSDmg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmehZKDmPYtRyn.diag
[2025-06-03 23:22:32] -rw-r--r-- 1 boincer umatlas     21478 Jun  3 23:22 stderr.txt
[2025-06-03 23:22:32] HITS file was successfully produced:
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas 179208305 Jun  3 23:21 shared/HITS.pool.root.1
[2025-06-03 23:22:32]  *** Contents of shared directory: ***
[2025-06-03 23:22:32] total 389112
[2025-06-03 23:22:32] -rw-r--r-- 2 boincer umatlas 217944352 Jun  3 22:17 ATLAS.root_0
[2025-06-03 23:22:32] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 22:17 start_atlas.sh
[2025-06-03 23:22:32] -rw-r--r-- 2 boincer umatlas    508879 Jun  3 22:17 input.tar.gz
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas 179208305 Jun  3 23:21 HITS.pool.root.1
[2025-06-03 23:22:32] -rw------- 1 boincer umatlas    757760 Jun  3 23:22 result.tar.gz
23:22:34 (3684): run_atlas exited; CPU time 40371.538875
23:22:34 (3684): called boinc_finish(0)

</stderr_txt>
]]>

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