Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:11:59 (3367): wrapper (7.7.26015): starting
13:11:59 (3367): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 13:11:59] Arguments: --nthreads 8
[2025-06-04 13:11:59] Threads: 8
[2025-06-04 13:11:59] Checking for CVMFS
[2025-06-04 13:12:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:12:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:12:01] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:12:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:12:02] 2.11.2.0 22385 33313 89272 146778 1 14 16768113 25165825 3920 130560 0 18994557 99.805 20314628 2331 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 13:12:02] CVMFS is ok
[2025-06-04 13:12:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:12:02] Checking for apptainer binary...
[2025-06-04 13:12:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:12:02] Running /usr/bin/apptainer --version
[2025-06-04 13:12:02] apptainer version 1.3.2-1.el7
[2025-06-04 13:12:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:19:17] cg-vwn497.simple-grid.lan
[2025-06-04 13:19:17] apptainer works
[2025-06-04 13:19:17] Set ATHENA_PROC_NUMBER=8
[2025-06-04 13:19:17] Set ATHENA_CORE_NUMBER=8
[2025-06-04 13:19:17] Starting ATLAS job with PandaID=6678074780
[2025-06-04 13:19:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:49:47]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:49:47] 2025-06-04 15:02:13,143 | INFO     | extracted standard info from prmon json
[2025-06-04 18:49:47] 2025-06-04 15:02:13,143 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:49:47] 2025-06-04 15:02:13,143 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:49:47] 2025-06-04 15:02:13,143 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:49:47] 2025-06-04 15:02:13,143 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:49:47] 2025-06-04 15:02:13,147 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:49:47] 2025-06-04 15:02:13,148 | INFO     | sum of square deviations: 2790348132.0
[2025-06-04 18:49:47] 2025-06-04 15:02:13,150 | INFO     | sum of deviations: 93609623603.5
[2025-06-04 18:49:47] 2025-06-04 15:02:13,150 | INFO     | mean x: 1749042914.5
[2025-06-04 18:49:47] 2025-06-04 15:02:13,150 | INFO     | mean y: 2396550.956730769
[2025-06-04 18:49:47] 2025-06-04 15:02:13,150 | INFO     | -- intersect: -58673883664.78863
[2025-06-04 18:49:47] 2025-06-04 15:02:13,150 | INFO     | intersect: -58673883664.78863
[2025-06-04 18:49:47] 2025-06-04 15:02:13,150 | INFO     | chi2: 6.466783025305164
[2025-06-04 18:49:47] 2025-06-04 15:02:13,151 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 18:49:47] 2025-06-04 15:02:13,152 | INFO     | sum of deviations: 104419845688.99998
[2025-06-04 18:49:47] 2025-06-04 15:02:13,152 | INFO     | mean x: 1749042762.0
[2025-06-04 18:49:47] 2025-06-04 15:02:13,153 | INFO     | mean y: 2404737.4039408867
[2025-06-04 18:49:47] 2025-06-04 15:02:13,153 | INFO     | -- intersect: -70406481729.9627
[2025-06-04 18:49:47] 2025-06-04 15:02:13,153 | INFO     | intersect: -70406481729.9627
[2025-06-04 18:49:47] 2025-06-04 15:02:13,153 | INFO     | chi2: 5.750557924393927
[2025-06-04 18:49:47] 2025-06-04 15:02:13,153 | INFO     | current chi2=5.750557924393927 (change=11.075446603180847 %)
[2025-06-04 18:49:47] 2025-06-04 15:02:13,153 | INFO     | right removable region: 202
[2025-06-04 18:49:47] 2025-06-04 15:02:13,154 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 18:49:47] 2025-06-04 15:02:13,155 | INFO     | sum of deviations: 24184159063.999992
[2025-06-04 18:49:47] 2025-06-04 15:02:13,155 | INFO     | mean x: 1749043067.0
[2025-06-04 18:49:47] 2025-06-04 15:02:13,155 | INFO     | mean y: 2450390.9655172415
[2025-06-04 18:49:47] 2025-06-04 15:02:13,155 | INFO     | -- intersect: -16304603077.108011
[2025-06-04 18:49:47] 2025-06-04 15:02:13,155 | INFO     | intersect: -16304603077.108011
[2025-06-04 18:49:47] 2025-06-04 15:02:13,156 | INFO     | chi2: 1.8590854150987015
[2025-06-04 18:49:47] 2025-06-04 15:02:13,156 | INFO     | current chi2=1.8590854150987015 (change=71.25177375174154 %)
[2025-06-04 18:49:47] 2025-06-04 15:02:13,156 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 18:49:47] 2025-06-04 15:02:13,158 | INFO     | sum of deviations: -5213349079.000002
[2025-06-04 18:49:47] 2025-06-04 15:02:13,158 | INFO     | mean x: 1749043219.5
[2025-06-04 18:49:47] 2025-06-04 15:02:13,158 | INFO     | mean y: 2474157.8585858587
[2025-06-04 18:49:47] 2025-06-04 15:02:13,158 | INFO     | -- intersect: 3790861964.0901814
[2025-06-04 18:49:47] 2025-06-04 15:02:13,158 | INFO     | intersect: 3790861964.0901814
[2025-06-04 18:49:47] 2025-06-04 15:02:13,158 | INFO     | chi2: 0.8005088606975916
[2025-06-04 18:49:47] 2025-06-04 15:02:13,158 | INFO     | current chi2=0.8005088606975916 (change=56.940716429906935 %)
[2025-06-04 18:49:47] 2025-06-04 15:02:13,159 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 18:49:47] 2025-06-04 15:02:13,160 | INFO     | sum of deviations: -5669553865.999994
[2025-06-04 18:49:47] 2025-06-04 15:02:13,160 | INFO     | mean x: 1749043372.0
[2025-06-04 18:49:47] 2025-06-04 15:02:13,160 | INFO     | mean y: 2474562.243523316
[2025-06-04 18:49:47] 2025-06-04 15:02:13,160 | INFO     | -- intersect: 4450945660.3764515
[2025-06-04 18:49:47] 2025-06-04 15:02:13,160 | INFO     | intersect: 4450945660.3764515
[2025-06-04 18:49:47] 2025-06-04 15:02:13,161 | INFO     | chi2: 0.792189815763915
[2025-06-04 18:49:47] 2025-06-04 15:02:13,161 | INFO     | current chi2=0.792189815763915 (change=1.0392195942000098 %)
[2025-06-04 18:49:47] 2025-06-04 15:02:13,161 | INFO     | left removable region: 30
[2025-06-04 18:49:47] 2025-06-04 15:02:13,161 | INFO     | sum of square deviations: 1577789583.0
[2025-06-04 18:49:47] 2025-06-04 15:02:13,162 | INFO     | sum of deviations: 3845602259.9999995
[2025-06-04 18:49:47] 2025-06-04 15:02:13,163 | INFO     | mean x: 1749043646.5
[2025-06-04 18:49:47] 2025-06-04 15:02:13,163 | INFO     | mean y: 2488157.802325581
[2025-06-04 18:49:47] 2025-06-04 15:02:13,163 | INFO     | -- intersect: -4260517677.887135
[2025-06-04 18:49:47] 2025-06-04 15:02:13,163 | INFO     | intersect: -4260517677.887135
[2025-06-04 18:49:47] 2025-06-04 15:02:13,163 | INFO     | chi2: 0.00011628474086605415
[2025-06-04 18:49:47] 2025-06-04 15:02:13,163 | INFO     | -- intersect: -4260517677.887135
[2025-06-04 18:49:47] 2025-06-04 15:02:13,163 | INFO     | current memory leak: 2.44 B/s (using 172 data points, chi2=0.00)
[2025-06-04 18:49:47] 2025-06-04 15:02:13,164 | INFO     | ..............................
[2025-06-04 18:49:47] 2025-06-04 15:02:13,164 | INFO     | . Timing measurements:
[2025-06-04 18:49:47] 2025-06-04 15:02:13,164 | INFO     | . get job = 0 s
[2025-06-04 18:49:47] 2025-06-04 15:02:13,165 | INFO     | . initial setup = 8 s
[2025-06-04 18:49:47] 2025-06-04 15:02:13,165 | INFO     | . payload setup = 135 s
[2025-06-04 18:49:47] 2025-06-04 15:02:13,165 | INFO     | . stage-in = 0 s
[2025-06-04 18:49:47] 2025-06-04 15:02:13,165 | INFO     | . payload execution = 12780 s
[2025-06-04 18:49:47] 2025-06-04 15:02:13,165 | INFO     | . stage-out = 4 s
[2025-06-04 18:49:47] 2025-06-04 15:02:13,165 | INFO     | . log creation = 1 s
[2025-06-04 18:49:47] 2025-06-04 15:02:13,165 | INFO     | ..............................
[2025-06-04 18:49:47] 2025-06-04 15:02:13,714 | INFO     | 
[2025-06-04 18:49:47] 2025-06-04 15:02:13,714 | INFO     | job summary report
[2025-06-04 18:49:47] 2025-06-04 15:02:13,715 | INFO     | --------------------------------------------------
[2025-06-04 18:49:47] 2025-06-04 15:02:13,715 | INFO     | PanDA job id: 6678074780
[2025-06-04 18:49:47] 2025-06-04 15:02:13,715 | INFO     | task id: 45006595
[2025-06-04 18:49:47] 2025-06-04 15:02:13,715 | INFO     | errors: (none)
[2025-06-04 18:49:47] 2025-06-04 15:02:13,715 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:49:47] 2025-06-04 15:02:13,715 | INFO     | pilot state: finished 
[2025-06-04 18:49:47] 2025-06-04 15:02:13,716 | INFO     | transexitcode: 0
[2025-06-04 18:49:47] 2025-06-04 15:02:13,716 | INFO     | exeerrorcode: 0
[2025-06-04 18:49:47] 2025-06-04 15:02:13,716 | INFO     | exeerrordiag: 
[2025-06-04 18:49:47] 2025-06-04 15:02:13,716 | INFO     | exitcode: 0
[2025-06-04 18:49:47] 2025-06-04 15:02:13,716 | INFO     | exitmsg: OK
[2025-06-04 18:49:47] 2025-06-04 15:02:13,716 | INFO     | cpuconsumptiontime: 45766 s
[2025-06-04 18:49:47] 2025-06-04 15:02:13,716 | INFO     | nevents: 400
[2025-06-04 18:49:47] 2025-06-04 15:02:13,716 | INFO     | neventsw: 0
[2025-06-04 18:49:47] 2025-06-04 15:02:13,716 | INFO     | pid: 25929
[2025-06-04 18:49:47] 2025-06-04 15:02:13,716 | INFO     | pgrp: 25929
[2025-06-04 18:49:47] 2025-06-04 15:02:13,717 | INFO     | corecount: 8
[2025-06-04 18:49:47] 2025-06-04 15:02:13,717 | INFO     | event service: False
[2025-06-04 18:49:47] 2025-06-04 15:02:13,717 | INFO     | sizes: {0: 2405014, 1: 2405213, 12: 2405213, 23: 2405241, 34: 2405269, 44: 2405297, 55: 2405453, 66: 2405481, 77: 2405509, 78: 2405771, 87: 2405827, 12919: 2435399
[2025-06-04 18:49:47] 2025-06-04 15:02:13,717 | INFO     | --------------------------------------------------
[2025-06-04 18:49:47] 2025-06-04 15:02:13,717 | INFO     | 
[2025-06-04 18:49:47] 2025-06-04 15:02:13,717 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-04 18:49:47] 2025-06-04 15:02:14,309 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,310 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,310 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,310 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,310 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,310 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,310 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,311 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,311 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,311 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,311 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,311 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,311 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,311 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,311 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,311 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,311 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,311 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:49:47] 2025-06-04 15:02:14,311 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,312 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:49:47] 2025-06-04 15:02:14,312 | INFO     | job 6678074780 has completed (purged errors)
[2025-06-04 18:49:47] 2025-06-04 15:02:14,312 | INFO     | overall cleanup function is called
[2025-06-04 18:49:47] 2025-06-04 15:02:15,321 | INFO     | --- collectZombieJob: --- 10, [25929]
[2025-06-04 18:49:47] 2025-06-04 15:02:15,321 | INFO     | zombie collector waiting for pid 25929
[2025-06-04 18:49:47] 2025-06-04 15:02:15,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:49:47] 2025-06-04 15:02:15,321 | INFO     | collected zombie processes
[2025-06-04 18:49:47] 2025-06-04 15:02:15,322 | INFO     | will attempt to kill all subprocesses of pid=25929
[2025-06-04 18:49:47] 2025-06-04 15:02:15,410 | INFO     | process IDs to be killed: [25929] (in reverse order)
[2025-06-04 18:49:47] 2025-06-04 15:02:16,394 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:49:47] 2025-06-04 15:02:16,395 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:49:47] 2025-06-04 15:02:16,398 | INFO     | did not find any defunct processes belonging to 25929
[2025-06-04 18:49:47] 2025-06-04 15:02:16,401 | INFO     | did not find any defunct processes belonging to 25929
[2025-06-04 18:49:47] 2025-06-04 15:02:16,402 | INFO     | ready for new job
[2025-06-04 18:49:47] 2025-06-04 15:02:16,402 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:49:47] 2025-06-04 15:02:16,403 | INFO     | **************************************
[2025-06-04 18:49:47] 2025-06-04 15:02:16,404 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:49:47] 2025-06-04 15:02:16,404 | INFO     | **************************************
[2025-06-04 18:49:47] 2025-06-04 15:02:16,404 | INFO     | 
[2025-06-04 18:49:47] 2025-06-04 15:02:16,404 | INFO     | pilot is running in a VM
[2025-06-04 18:49:47] 2025-06-04 15:02:16,404 | INFO     | architecture information:
[2025-06-04 18:49:47] 2025-06-04 15:02:16,406 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:49:47] 2025-06-04 15:02:16,585 | INFO     | cat /etc/os-release:
[2025-06-04 18:49:47] NAME="CentOS Linux"
[2025-06-04 18:49:47] VERSION="7 (Core)"
[2025-06-04 18:49:47] ID="centos"
[2025-06-04 18:49:47] ID_LIKE="rhel fedora"
[2025-06-04 18:49:47] VERSION_ID="7"
[2025-06-04 18:49:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:49:47] ANSI_COLOR="0;31"
[2025-06-04 18:49:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:49:47] HOME_URL="https://www.centos.org/"
[2025-06-04 18:49:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:49:47] 
[2025-06-04 18:49:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:49:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:49:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:49:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:49:47] 
[2025-06-04 18:49:47] 2025-06-04 15:02:16,586 | INFO     | **************************************
[2025-06-04 18:49:47] 2025-06-04 15:02:17,089 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-04 18:49:47] 2025-06-04 15:02:17,379 | INFO     | sufficient remaining disk space (497185456128 B)
[2025-06-04 18:49:47] 2025-06-04 15:02:17,379 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:49:47] 2025-06-04 15:02:17,379 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:49:47] 2025-06-04 15:02:17,379 | INFO     | update_server=False
[2025-06-04 18:49:47] 2025-06-04 15:02:17,379 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:49:47] 2025-06-04 15:02:17,380 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 18:49:47] 2025-06-04 15:02:17,380 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:49:47] 2025-06-04 15:02:17,380 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:49:47] 2025-06-04 15:02:17,380 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:49:47] 2025-06-04 15:02:17,382 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:49:47] 2025-06-04 15:02:17,443 | INFO     | all job control threads have been joined
[2025-06-04 18:49:47] 2025-06-04 15:02:17,625 | INFO     | all data control threads have been joined
[2025-06-04 18:49:47] 2025-06-04 15:02:17,704 | INFO     | all payload control threads have been joined
[2025-06-04 18:49:47] 2025-06-04 15:02:18,143 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:49:47] 2025-06-04 15:02:18,311 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:49:47] 2025-06-04 15:02:18,311 | INFO     | aborting loop
[2025-06-04 18:49:47] 2025-06-04 15:02:18,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:49:47] 2025-06-04 15:02:18,385 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:18,449 | INFO     | [job] control thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:18,557 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:18,594 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:18,603 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:18,631 | INFO     | [data] control thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:18,710 | INFO     | [payload] control thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:19,231 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:19,232 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:19,317 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:19,325 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:19,513 | INFO     | [job] validate thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:19,583 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:19,871 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:20,149 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:21,390 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:49:47] 2025-06-04 15:02:22,737 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140628243838784)>', '<ExcThread(monitor, started 140627413030656)>']
[2025-06-04 18:49:47] 2025-06-04 15:02:23,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:49:47] 2025-06-04 15:02:23,415 | INFO     | [monitor] control thread has ended
[2025-06-04 18:49:47] 2025-06-04 15:02:27,762 | INFO     | all workflow threads have been joined
[2025-06-04 18:49:47] 2025-06-04 15:02:27,762 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:49:47] 2025-06-04 15:02:27,763 | INFO     | traces error code: 0
[2025-06-04 18:49:47] 2025-06-04 15:02:27,763 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:49:47] 2025-06-04 15:02:28,117 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:49:47] 2025-06-04 15:02:28,183 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:49:47] 2025-06-04 15:02:28,235 [wrapper] pilotpid: 13302
[2025-06-04 18:49:47] 2025-06-04 15:02:28,300 [wrapper] Pilot exit status: 0
[2025-06-04 18:49:47] 2025-06-04 15:02:28,717 [wrapper] pandaids: 6678074780
[2025-06-04 18:49:47] 2025-06-04 15:02:29,472 [wrapper] cleanup supervisor_pilot 10273 13303
[2025-06-04 18:49:47] 2025-06-04 15:02:29,557 [wrapper] Test setup, not cleaning
[2025-06-04 18:49:47] 2025-06-04 15:02:29,646 [wrapper] apfmon messages muted
[2025-06-04 18:49:47] 2025-06-04 15:02:29,744 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:49:47] 2025-06-04 15:02:29,849 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:49:47]  *** Error codes and diagnostics ***
[2025-06-04 18:49:47]     "exeErrorCode": 0,
[2025-06-04 18:49:47]     "exeErrorDiag": "",
[2025-06-04 18:49:47]     "pilotErrorCode": 0,
[2025-06-04 18:49:47]     "pilotErrorDiag": "",
[2025-06-04 18:49:47]  *** Listing of results directory ***
[2025-06-04 18:49:47] total 395180
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc      5111 Jun  3 23:41 queuedata.json
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc    495897 Jun  3 23:41 pilot3.tar.gz
[2025-06-04 18:49:47] -rwx------. 1 boinc boinc     37140 Jun  3 23:42 runpilot2-wrapper.sh
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc       100 Jun  4 13:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:49:47] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 13:11 run_atlas
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc       105 Jun  4 13:11 job.xml
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc      6392 Jun  4 13:11 init_data.xml
[2025-06-04 18:49:47] -rw-r--r--. 2 boinc boinc 216509196 Jun  4 13:11 EVNT.45006593._001848.pool.root.1
[2025-06-04 18:49:47] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:11 start_atlas.sh
[2025-06-04 18:49:47] drwxrwx--x. 2 boinc boinc        68 Jun  4 13:11 shared
[2025-06-04 18:49:47] -rw-r--r--. 2 boinc boinc    508878 Jun  4 13:11 input.tar.gz
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc         0 Jun  4 13:11 boinc_lockfile
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc      2525 Jun  4 13:19 pandaJob.out
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc    986812 Jun  4 13:22 agis_schedconf.cvmfs.json
[2025-06-04 18:49:47] drwx------. 4 boinc boinc      4096 Jun  4 13:22 pilot3
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc 181307440 Jun  4 16:59 HITS.45006595._046067.pool.root.1
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc       531 Jun  4 16:59 boinc_task_state.xml
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc      1019 Jun  4 17:00 memory_monitor_summary.json
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc   1598969 Jun  4 17:00 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc    370440 Jun  4 17:00 log.45006595._046067.job.log.tgz.1
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc        95 Jun  4 17:01 pilot_heartbeat.json
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc      7690 Jun  4 17:02 heartbeat.json
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc      4540 Jun  4 17:02 pilotlog.txt
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc   1145634 Jun  4 17:02 log.45006595._046067.job.log.1
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc       357 Jun  4 17:02 output.list
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc       620 Jun  4 17:02 runtime_log
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc   1536000 Jun  4 17:02 result.tar.gz
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc      8673 Jun  4 17:02 runtime_log.err
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc       657 Jun  4 17:02 nJlLDmjZog7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAGmKDmiKZ2Io.diag
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc      8192 Jun  4 18:49 boinc_mmap_file
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc        28 Jun  4 18:49 wrapper_checkpoint.txt
[2025-06-04 18:49:47] -rw-r--r--. 1 boinc boinc     20522 Jun  4 18:49 stderr.txt
[2025-06-04 18:49:47] HITS file was successfully produced:
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc 181307440 Jun  4 16:59 shared/HITS.pool.root.1
[2025-06-04 18:49:47]  *** Contents of shared directory: ***
[2025-06-04 18:49:47] total 390512
[2025-06-04 18:49:47] -rw-r--r--. 2 boinc boinc 216509196 Jun  4 13:11 ATLAS.root_0
[2025-06-04 18:49:47] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:11 start_atlas.sh
[2025-06-04 18:49:47] -rw-r--r--. 2 boinc boinc    508878 Jun  4 13:11 input.tar.gz
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc 181307440 Jun  4 16:59 HITS.pool.root.1
[2025-06-04 18:49:47] -rw-------. 1 boinc boinc   1536000 Jun  4 17:02 result.tar.gz
18:49:49 (3367): run_atlas exited; CPU time 45934.178212
18:49:49 (3367): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN