Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:32:05 (1371174): wrapper (7.7.26015): starting
22:32:05 (1371174): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 22:32:05] Arguments: --nthreads 12
[2025-06-03 22:32:05] Threads: 12
[2025-06-03 22:32:05] Checking for CVMFS
[2025-06-03 22:32:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 22:32:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 22:32:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 22:32:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 22:32:06] 2.12.6.0 5533 30908 464132 146765 0 66 21500363 32935936 3748 16776704 1 128041121 99.630 117276290 31745 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 22:32:06] CVMFS is ok
[2025-06-03 22:32:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 22:32:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 22:32:06] Further information can be found at the LHC@home message board.
[2025-06-03 22:32:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 22:32:06] Checking for apptainer binary...
[2025-06-03 22:32:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 22:32:06] Running /usr/bin/apptainer --version
[2025-06-03 22:32:06] apptainer version 1.4.1-1.el9
[2025-06-03 22:32:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 22:32:06] c6-2-29-3.aglt2.org
[2025-06-03 22:32:06] apptainer works
[2025-06-03 22:32:06] Set ATHENA_PROC_NUMBER=12
[2025-06-03 22:32:06] Set ATHENA_CORE_NUMBER=12
[2025-06-03 22:32:06] Starting ATLAS job with PandaID=6678074746
[2025-06-03 22:32:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:08:25]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:08:25]  guid=97cc4701-91bb-4f21-a74b-53a5064a2d72
[2025-06-03 23:08:25]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 23:08:25]  is_altstaged=None
[2025-06-03 23:08:25]  is_tar=False
[2025-06-03 23:08:25]  lfn=log.45006595._046033.job.log.tgz.1
[2025-06-03 23:08:25]  mtime=0
[2025-06-03 23:08:25]  protocol_id=None
[2025-06-03 23:08:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 23:08:25]  replicas=None
[2025-06-03 23:08:25]  scope=mc23_13p6TeV
[2025-06-03 23:08:25]  status=None
[2025-06-03 23:08:25]  status_code=0
[2025-06-03 23:08:25]  storage_token=
[2025-06-03 23:08:25]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678074746/log.45006595._046033.job.log.tgz.1
[2025-06-03 23:08:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/47/log.45006595._046033.job.log.tgz.1
[2025-06-03 23:08:25]  workdir=None
[2025-06-03 23:08:25] ]
[2025-06-03 23:08:25] 2025-06-04 03:07:58,334 | INFO     | transferring file log.45006595._046033.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678074746/log.45006595._046033.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 23:08:25] 2025-06-04 03:07:58,335 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678074746/log.45006595._046033.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._046033.job
[2025-06-03 23:08:25] 2025-06-04 03:07:58,348 | INFO     | adding to output.list: log.45006595._046033.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8e/47/log.45006595._046033.job.log.tg
[2025-06-03 23:08:25] 2025-06-04 03:07:58,349 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 23:08:25] 2025-06-04 03:07:58,349 | INFO     | summary of transferred files:
[2025-06-03 23:08:25] 2025-06-04 03:07:58,349 | INFO     |  -- lfn=log.45006595._046033.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 23:08:25] 2025-06-04 03:07:58,349 | INFO     | stage-out finished correctly
[2025-06-03 23:08:25] 2025-06-04 03:07:59,593 | INFO     | monitor loop #167: job 0:6678074746 is in state 'finished'
[2025-06-03 23:08:25] 2025-06-04 03:07:59,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:08:25] 2025-06-04 03:07:59,896 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 23:08:25] 2025-06-04 03:08:00,143 | INFO     | job 6678074746 has state=finished
[2025-06-03 23:08:25] 2025-06-04 03:08:00,143 | INFO     | preparing for final server update for job 6678074746 in state='finished'
[2025-06-03 23:08:25] 2025-06-04 03:08:00,144 | INFO     | this job has now completed (state=finished)
[2025-06-03 23:08:25] 2025-06-04 03:08:00,144 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 23:08:25] 2025-06-04 03:08:00,145 | INFO     | log transfer has been attempted: DONE
[2025-06-03 23:08:25] 2025-06-04 03:08:00,145 | INFO     | job 6678074746 has finished - writing final server update
[2025-06-03 23:08:25] 2025-06-04 03:08:00,145 | INFO     | total number of processed events: 400 (read)
[2025-06-03 23:08:25] 2025-06-04 03:08:00,163 | INFO     | executing command: lscpu
[2025-06-03 23:08:25] 2025-06-04 03:08:00,240 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 23:08:25] 2025-06-04 03:08:02,096 | INFO     | monitor loop #168: job 0:6678074746 is in state 'finished'
[2025-06-03 23:08:25] 2025-06-04 03:08:02,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:08:25] 2025-06-04 03:08:04,599 | INFO     | monitor loop #169: job 0:6678074746 is in state 'finished'
[2025-06-03 23:08:25] 2025-06-04 03:08:04,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:08:25] 2025-06-04 03:08:05,613 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 23:08:25] 2025-06-04 03:08:05,614 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678074746/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:08:25] 2025-06-04 03:08:05,615 | INFO     | extracted standard info from prmon json
[2025-06-03 23:08:25] 2025-06-04 03:08:05,615 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:08:25] 2025-06-04 03:08:05,616 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:08:25] 2025-06-04 03:08:05,616 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:08:25] 2025-06-04 03:08:05,616 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:08:25] 2025-06-04 03:08:05,619 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:08:25] 2025-06-04 03:08:05,619 | INFO     | sum of square deviations: 6798267.0
[2025-06-03 23:08:25] 2025-06-04 03:08:05,619 | INFO     | sum of deviations: 3534923038.0
[2025-06-03 23:08:25] 2025-06-04 03:08:05,619 | INFO     | mean x: 1749005497.5
[2025-06-03 23:08:25] 2025-06-04 03:08:05,619 | INFO     | mean y: 2644393.1428571427
[2025-06-03 23:08:25] 2025-06-04 03:08:05,620 | INFO     | -- intersect: -909434985329.4617
[2025-06-03 23:08:25] 2025-06-04 03:08:05,620 | INFO     | intersect: -909434985329.4617
[2025-06-03 23:08:25] 2025-06-04 03:08:05,620 | INFO     | chi2: 0.5824297937766717
[2025-06-03 23:08:25] 2025-06-04 03:08:05,620 | INFO     | -- intersect: -909434985329.4617
[2025-06-03 23:08:25] 2025-06-04 03:08:05,620 | INFO     | current memory leak: 519.97 B/s (using 28 data points, chi2=0.58)
[2025-06-03 23:08:25] 2025-06-04 03:08:05,621 | INFO     | ..............................
[2025-06-03 23:08:25] 2025-06-04 03:08:05,621 | INFO     | . Timing measurements:
[2025-06-03 23:08:25] 2025-06-04 03:08:05,621 | INFO     | . get job = 0 s
[2025-06-03 23:08:25] 2025-06-04 03:08:05,621 | INFO     | . initial setup = 2 s
[2025-06-03 23:08:25] 2025-06-04 03:08:05,621 | INFO     | . payload setup = 8 s
[2025-06-03 23:08:25] 2025-06-04 03:08:05,621 | INFO     | . stage-in = 0 s
[2025-06-03 23:08:25] 2025-06-04 03:08:05,621 | INFO     | . payload execution = 2110 s
[2025-06-03 23:08:25] 2025-06-04 03:08:05,622 | INFO     | . stage-out = 0 s
[2025-06-03 23:08:25] 2025-06-04 03:08:05,622 | INFO     | . log creation = 0 s
[2025-06-03 23:08:25] 2025-06-04 03:08:05,622 | INFO     | ..............................
[2025-06-03 23:08:25] 2025-06-04 03:08:05,673 | INFO     | 
[2025-06-03 23:08:25] 2025-06-04 03:08:05,673 | INFO     | job summary report
[2025-06-03 23:08:25] 2025-06-04 03:08:05,673 | INFO     | --------------------------------------------------
[2025-06-03 23:08:25] 2025-06-04 03:08:05,673 | INFO     | PanDA job id: 6678074746
[2025-06-03 23:08:25] 2025-06-04 03:08:05,673 | INFO     | task id: 45006595
[2025-06-03 23:08:25] 2025-06-04 03:08:05,673 | INFO     | errors: (none)
[2025-06-03 23:08:25] 2025-06-04 03:08:05,673 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | pilot state: finished 
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | transexitcode: 0
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | exeerrorcode: 0
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | exeerrordiag: 
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | exitcode: 0
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | exitmsg: OK
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | cpuconsumptiontime: 18137 s
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | nevents: 400
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | neventsw: 0
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | pid: 1381361
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | pgrp: 1381361
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | corecount: 12
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | event service: False
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | sizes: {0: 2405184, 6: 2405390, 11: 2405418, 2123: 2439203, 2125: 2439203, 2131: 2439373}
[2025-06-03 23:08:25] 2025-06-04 03:08:05,674 | INFO     | --------------------------------------------------
[2025-06-03 23:08:25] 2025-06-04 03:08:05,675 | INFO     | 
[2025-06-03 23:08:25] 2025-06-04 03:08:05,675 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 23:08:25] 2025-06-04 03:08:05,696 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,697 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,697 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,697 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,697 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,697 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,697 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,698 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,698 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,698 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,698 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,698 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,698 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,698 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,698 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,699 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:08:25] 2025-06-04 03:08:05,699 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,699 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:08:25] 2025-06-04 03:08:05,699 | INFO     | job 6678074746 has completed (purged errors)
[2025-06-03 23:08:25] 2025-06-04 03:08:05,700 | INFO     | overall cleanup function is called
[2025-06-03 23:08:25] 2025-06-04 03:08:06,709 | INFO     | --- collectZombieJob: --- 10, [1381361]
[2025-06-03 23:08:25] 2025-06-04 03:08:06,710 | INFO     | zombie collector waiting for pid 1381361
[2025-06-03 23:08:25] 2025-06-04 03:08:06,710 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:08:25] 2025-06-04 03:08:06,710 | INFO     | collected zombie processes
[2025-06-03 23:08:25] 2025-06-04 03:08:06,710 | INFO     | will attempt to kill all subprocesses of pid=1381361
[2025-06-03 23:08:25] 2025-06-04 03:08:06,852 | INFO     | process IDs to be killed: [1381361] (in reverse order)
[2025-06-03 23:08:25] 2025-06-04 03:08:06,912 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:08:25] 2025-06-04 03:08:06,912 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:08:25] 2025-06-04 03:08:06,923 | INFO     | did not find any defunct processes belonging to 1381361
[2025-06-03 23:08:25] 2025-06-04 03:08:06,930 | INFO     | did not find any defunct processes belonging to 1381361
[2025-06-03 23:08:25] 2025-06-04 03:08:06,930 | INFO     | ready for new job
[2025-06-03 23:08:25] 2025-06-04 03:08:06,930 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:08:25] 2025-06-04 03:08:06,933 | INFO     | **************************************
[2025-06-03 23:08:25] 2025-06-04 03:08:06,933 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:08:25] 2025-06-04 03:08:06,933 | INFO     | **************************************
[2025-06-03 23:08:25] 2025-06-04 03:08:06,933 | INFO     | 
[2025-06-03 23:08:25] 2025-06-04 03:08:06,950 | INFO     | architecture information:
[2025-06-03 23:08:25] 2025-06-04 03:08:06,951 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:08:25] 2025-06-04 03:08:06,967 | INFO     | cat /etc/os-release:
[2025-06-03 23:08:25] NAME="CentOS Linux"
[2025-06-03 23:08:25] VERSION="7 (Core)"
[2025-06-03 23:08:25] ID="centos"
[2025-06-03 23:08:25] ID_LIKE="rhel fedora"
[2025-06-03 23:08:25] VERSION_ID="7"
[2025-06-03 23:08:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:08:25] ANSI_COLOR="0;31"
[2025-06-03 23:08:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:08:25] HOME_URL="https://www.centos.org/"
[2025-06-03 23:08:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:08:25] 
[2025-06-03 23:08:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:08:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:08:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:08:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:08:25] 
[2025-06-03 23:08:25] 2025-06-04 03:08:06,968 | INFO     | **************************************
[2025-06-03 23:08:25] 2025-06-04 03:08:07,471 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 23:08:25] 2025-06-04 03:08:07,491 | INFO     | sufficient remaining disk space (76376178688 B)
[2025-06-03 23:08:25] 2025-06-04 03:08:07,492 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:08:25] 2025-06-04 03:08:07,492 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:08:25] 2025-06-04 03:08:07,493 | INFO     | update_server=False
[2025-06-03 23:08:25] 2025-06-04 03:08:07,493 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:08:25] 2025-06-04 03:08:07,493 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:08:25] 2025-06-04 03:08:07,780 | INFO     | all job control threads have been joined
[2025-06-03 23:08:25] 2025-06-04 03:08:07,936 | INFO     | all data control threads have been joined
[2025-06-03 23:08:25] 2025-06-04 03:08:08,107 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:08:25] 2025-06-04 03:08:08,107 | INFO     | aborting loop
[2025-06-03 23:08:25] 2025-06-04 03:08:08,179 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:08:25] 2025-06-04 03:08:08,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:08:25] 2025-06-04 03:08:08,180 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:08:25] 2025-06-04 03:08:08,498 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:08,499 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:08,786 | INFO     | [job] control thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:08,847 | INFO     | [job] validate thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:08,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:08:25] 2025-06-04 03:08:08,941 | INFO     | [data] control thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:08,961 | INFO     | all payload control threads have been joined
[2025-06-03 23:08:25] 2025-06-04 03:08:08,969 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:09,005 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:09,082 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:09,113 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:09,232 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:09,852 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:09,966 | INFO     | [payload] control thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:09,969 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:10,459 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:08:25] 2025-06-04 03:08:10,920 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:14,464 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:17,597 | INFO     | job.realtimelogging is not enabled
[2025-06-03 23:08:25] 2025-06-04 03:08:18,603 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:08:25] 2025-06-04 03:08:20,188 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140039678687040)>', '<ExcThread(monitor, started 140039178659584)>']
[2025-06-03 23:08:25] 2025-06-04 03:08:20,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:08:25] 2025-06-04 03:08:20,240 | INFO     | [monitor] control thread has ended
[2025-06-03 23:08:25] 2025-06-04 03:08:25,214 | INFO     | all workflow threads have been joined
[2025-06-03 23:08:25] 2025-06-04 03:08:25,214 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:08:25] 2025-06-04 03:08:25,215 | INFO     | traces error code: 0
[2025-06-03 23:08:25] 2025-06-04 03:08:25,215 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:08:25] 2025-06-04 03:08:25,306 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:08:25] 2025-06-04 03:08:25,311 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:08:25] 2025-06-04 03:08:25,316 [wrapper] pilotpid: 1374797
[2025-06-03 23:08:25] 2025-06-04 03:08:25,320 [wrapper] Pilot exit status: 0
[2025-06-03 23:08:25] 2025-06-04 03:08:25,335 [wrapper] pandaids: 6678074746
[2025-06-03 23:08:25] 2025-06-04 03:08:25,379 [wrapper] cleanup supervisor_pilot 1460003 1374798
[2025-06-03 23:08:25] 2025-06-04 03:08:25,384 [wrapper] Test setup, not cleaning
[2025-06-03 23:08:25] 2025-06-04 03:08:25,389 [wrapper] apfmon messages muted
[2025-06-03 23:08:25] 2025-06-04 03:08:25,393 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:08:25] 2025-06-04 03:08:25,398 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:08:25]  *** Error codes and diagnostics ***
[2025-06-03 23:08:25]     "exeErrorCode": 0,
[2025-06-03 23:08:25]     "exeErrorDiag": "",
[2025-06-03 23:08:25]     "pilotErrorCode": 0,
[2025-06-03 23:08:25]     "pilotErrorDiag": "",
[2025-06-03 23:08:25]  *** Listing of results directory ***
[2025-06-03 23:08:25] total 386448
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 17:15 pilot3.tar.gz
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 17:39 queuedata.json
[2025-06-03 23:08:25] -rwx------. 1 boincer umatlas     37140 Jun  3 17:39 runpilot2-wrapper.sh
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas       100 Jun  3 22:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:08:25] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 22:32 run_atlas
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas       105 Jun  3 22:32 job.xml
[2025-06-03 23:08:25] -rw-r--r--. 2 boincer umatlas 216084042 Jun  3 22:32 EVNT.45006593._001846.pool.root.1
[2025-06-03 23:08:25] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 22:32 start_atlas.sh
[2025-06-03 23:08:25] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 22:32 shared
[2025-06-03 23:08:25] -rw-r--r--. 2 boincer umatlas    508886 Jun  3 22:32 input.tar.gz
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas         0 Jun  3 22:32 boinc_lockfile
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 22:32 pandaJob.out
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas    986077 Jun  3 22:32 agis_schedconf.cvmfs.json
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas   1603667 Jun  3 22:32 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:08:25] drwx------. 4 boincer umatlas      4096 Jun  3 22:32 pilot3
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas      6842 Jun  3 23:04 init_data.xml
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas 174617014 Jun  3 23:07 HITS.45006595._046033.pool.root.1
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas       529 Jun  3 23:07 boinc_task_state.xml
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas        95 Jun  3 23:07 pilot_heartbeat.json
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas      1040 Jun  3 23:07 memory_monitor_summary.json
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas    351650 Jun  3 23:07 log.45006595._046033.job.log.tgz.1
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 23:08 boinc_mmap_file
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas        27 Jun  3 23:08 wrapper_checkpoint.txt
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas      7723 Jun  3 23:08 heartbeat.json
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas      4425 Jun  3 23:08 pilotlog.txt
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas    242736 Jun  3 23:08 log.45006595._046033.job.log.1
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas       357 Jun  3 23:08 output.list
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas       620 Jun  3 23:08 runtime_log
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas    614400 Jun  3 23:08 result.tar.gz
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas      8666 Jun  3 23:08 runtime_log.err
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas       651 Jun  3 23:08 lq5MDmIXog7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0FmKDmu14zlm.diag
[2025-06-03 23:08:25] -rw-r--r--. 1 boincer umatlas     21269 Jun  3 23:08 stderr.txt
[2025-06-03 23:08:25] HITS file was successfully produced:
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas 174617014 Jun  3 23:07 shared/HITS.pool.root.1
[2025-06-03 23:08:25]  *** Contents of shared directory: ***
[2025-06-03 23:08:25] total 382668
[2025-06-03 23:08:25] -rw-r--r--. 2 boincer umatlas 216084042 Jun  3 22:32 ATLAS.root_0
[2025-06-03 23:08:25] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 22:32 start_atlas.sh
[2025-06-03 23:08:25] -rw-r--r--. 2 boincer umatlas    508886 Jun  3 22:32 input.tar.gz
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas 174617014 Jun  3 23:07 HITS.pool.root.1
[2025-06-03 23:08:25] -rw-------. 1 boincer umatlas    614400 Jun  3 23:08 result.tar.gz
23:08:27 (1371174): run_atlas exited; CPU time 18157.518153
23:08:27 (1371174): called boinc_finish(0)

</stderr_txt>
]]>

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