Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:05:53 (66750): wrapper (7.7.26015): starting
22:05:53 (66750): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 22:05:53] Arguments: --nthreads 8
[2025-06-03 22:05:53] Threads: 8
[2025-06-03 22:05:53] Checking for CVMFS
[2025-06-03 22:05:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 22:05:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 22:05:53] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 22:05:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 22:05:53] 2.11.2.0 12263 10514 259708 146764 2 67 10779990 18432000 13894 130560 0 78809502 99.299 104737787 58546 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 22:05:53] CVMFS is ok
[2025-06-03 22:05:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 22:05:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 22:05:53] Further information can be found at the LHC@home message board.
[2025-06-03 22:05:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 22:05:53] Checking for apptainer binary...
[2025-06-03 22:05:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 22:05:54] Running /usr/bin/apptainer --version
[2025-06-03 22:05:54] apptainer version 1.3.2-1.el7
[2025-06-03 22:05:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 22:05:55] c-212-14.aglt2.org
[2025-06-03 22:05:55] apptainer works
[2025-06-03 22:05:55] Set ATHENA_PROC_NUMBER=8
[2025-06-03 22:05:55] Set ATHENA_CORE_NUMBER=8
[2025-06-03 22:05:55] Starting ATLAS job with PandaID=6678074429
[2025-06-03 22:05:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:20:21]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:20:21]  status_code=0
[2025-06-03 23:20:21]  storage_token=
[2025-06-03 23:20:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678074429/log.45006595._045942.job.log.tgz.1
[2025-06-03 23:20:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/e4/log.45006595._045942.job.log.tgz.1
[2025-06-03 23:20:21]  workdir=None
[2025-06-03 23:20:21] ]
[2025-06-03 23:20:21] 2025-06-04 03:19:45,059 | INFO     | transferring file log.45006595._045942.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678074429/log.45006595._045942.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 23:20:21] 2025-06-04 03:19:45,059 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678074429/log.45006595._045942.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._045942.job
[2025-06-03 23:20:21] 2025-06-04 03:19:45,188 | INFO     | adding to output.list: log.45006595._045942.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a5/e4/log.45006595._045942.job.log.tg
[2025-06-03 23:20:21] 2025-06-04 03:19:45,189 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 23:20:21] 2025-06-04 03:19:45,189 | INFO     | summary of transferred files:
[2025-06-03 23:20:21] 2025-06-04 03:19:45,189 | INFO     |  -- lfn=log.45006595._045942.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 23:20:21] 2025-06-04 03:19:45,189 | INFO     | stage-out finished correctly
[2025-06-03 23:20:21] 2025-06-04 03:19:45,300 | INFO     | monitor loop #331: job 0:6678074429 is in state 'finished'
[2025-06-03 23:20:21] 2025-06-04 03:19:45,300 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:20:21] 2025-06-04 03:19:46,251 | INFO     | 4406s have passed since pilot start - server update state is 'RUNNING'
[2025-06-03 23:20:21] 2025-06-04 03:19:47,467 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 23:20:21] 2025-06-04 03:19:47,803 | INFO     | monitor loop #332: job 0:6678074429 is in state 'finished'
[2025-06-03 23:20:21] 2025-06-04 03:19:47,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:20:21] 2025-06-04 03:19:49,970 | INFO     | job 6678074429 has state=finished
[2025-06-03 23:20:21] 2025-06-04 03:19:49,970 | INFO     | preparing for final server update for job 6678074429 in state='finished'
[2025-06-03 23:20:21] 2025-06-04 03:19:49,970 | INFO     | this job has now completed (state=finished)
[2025-06-03 23:20:21] 2025-06-04 03:19:49,970 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 23:20:21] 2025-06-04 03:19:49,971 | INFO     | log transfer has been attempted: DONE
[2025-06-03 23:20:21] 2025-06-04 03:19:49,971 | INFO     | job 6678074429 has finished - writing final server update
[2025-06-03 23:20:21] 2025-06-04 03:19:49,971 | INFO     | total number of processed events: 400 (read)
[2025-06-03 23:20:21] 2025-06-04 03:19:49,975 | INFO     | executing command: lscpu
[2025-06-03 23:20:21] 2025-06-04 03:19:50,071 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 23:20:21] 2025-06-04 03:19:50,307 | INFO     | monitor loop #333: job 0:6678074429 is in state 'finished'
[2025-06-03 23:20:21] 2025-06-04 03:19:50,307 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:20:21] 2025-06-04 03:19:52,812 | INFO     | monitor loop #334: job 0:6678074429 is in state 'finished'
[2025-06-03 23:20:21] 2025-06-04 03:19:52,812 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:20:21] 2025-06-04 03:19:55,316 | INFO     | monitor loop #335: job 0:6678074429 is in state 'finished'
[2025-06-03 23:20:21] 2025-06-04 03:19:55,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:20:21] 2025-06-04 03:19:57,636 | INFO     | PID=72538 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 23:20:21] 2025-06-04 03:19:57,636 | INFO     | .. there are 18 such processes running
[2025-06-03 23:20:21] 2025-06-04 03:19:57,820 | INFO     | monitor loop #336: job 0:6678074429 is in state 'finished'
[2025-06-03 23:20:21] 2025-06-04 03:19:57,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:20:21] 2025-06-04 03:20:00,323 | INFO     | monitor loop #337: job 0:6678074429 is in state 'finished'
[2025-06-03 23:20:21] 2025-06-04 03:20:00,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:20:21] 2025-06-04 03:20:01,249 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 23:20:21] 2025-06-04 03:20:01,250 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678074429/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:20:21] 2025-06-04 03:20:01,251 | INFO     | extracted standard info from prmon json
[2025-06-03 23:20:21] 2025-06-04 03:20:01,251 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:20:21] 2025-06-04 03:20:01,251 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:20:21] 2025-06-04 03:20:01,251 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:20:21] 2025-06-04 03:20:01,251 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:20:21] 2025-06-04 03:20:01,253 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:20:21] 2025-06-04 03:20:01,253 | INFO     | sum of square deviations: 85136480.0
[2025-06-03 23:20:21] 2025-06-04 03:20:01,253 | INFO     | sum of deviations: -1411528593.0000002
[2025-06-03 23:20:21] 2025-06-04 03:20:01,253 | INFO     | mean x: 1749005089.0
[2025-06-03 23:20:21] 2025-06-04 03:20:01,253 | INFO     | mean y: 2498217.1384615386
[2025-06-03 23:20:21] 2025-06-04 03:20:01,253 | INFO     | -- intersect: 29000299070.850174
[2025-06-03 23:20:21] 2025-06-04 03:20:01,254 | INFO     | intersect: 29000299070.850174
[2025-06-03 23:20:21] 2025-06-04 03:20:01,254 | INFO     | chi2: 0.034818644496092656
[2025-06-03 23:20:21] 2025-06-04 03:20:01,254 | INFO     | -- intersect: 29000299070.850174
[2025-06-03 23:20:21] 2025-06-04 03:20:01,254 | INFO     | current memory leak: -16.58 B/s (using 65 data points, chi2=0.03)
[2025-06-03 23:20:21] 2025-06-04 03:20:01,254 | INFO     | ..............................
[2025-06-03 23:20:21] 2025-06-04 03:20:01,254 | INFO     | . Timing measurements:
[2025-06-03 23:20:21] 2025-06-04 03:20:01,254 | INFO     | . get job = 0 s
[2025-06-03 23:20:21] 2025-06-04 03:20:01,254 | INFO     | . initial setup = 2 s
[2025-06-03 23:20:21] 2025-06-04 03:20:01,254 | INFO     | . payload setup = 13 s
[2025-06-03 23:20:21] 2025-06-04 03:20:01,255 | INFO     | . stage-in = 0 s
[2025-06-03 23:20:21] 2025-06-04 03:20:01,255 | INFO     | . payload execution = 4365 s
[2025-06-03 23:20:21] 2025-06-04 03:20:01,255 | INFO     | . stage-out = 0 s
[2025-06-03 23:20:21] 2025-06-04 03:20:01,255 | INFO     | . log creation = 0 s
[2025-06-03 23:20:21] 2025-06-04 03:20:01,255 | INFO     | ..............................
[2025-06-03 23:20:21] 2025-06-04 03:20:01,335 | INFO     | 
[2025-06-03 23:20:21] 2025-06-04 03:20:01,335 | INFO     | job summary report
[2025-06-03 23:20:21] 2025-06-04 03:20:01,335 | INFO     | --------------------------------------------------
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | PanDA job id: 6678074429
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | task id: 45006595
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | errors: (none)
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | pilot state: finished 
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | transexitcode: 0
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | exeerrorcode: 0
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | exeerrordiag: 
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | exitcode: 0
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | exitmsg: OK
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | cpuconsumptiontime: 28750 s
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | nevents: 400
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | neventsw: 0
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | pid: 82173
[2025-06-03 23:20:21] 2025-06-04 03:20:01,336 | INFO     | pgrp: 82173
[2025-06-03 23:20:21] 2025-06-04 03:20:01,337 | INFO     | corecount: 8
[2025-06-03 23:20:21] 2025-06-04 03:20:01,337 | INFO     | event service: False
[2025-06-03 23:20:21] 2025-06-04 03:20:01,337 | INFO     | sizes: {0: 2405183, 9: 2405389, 11: 2405417, 4382: 2431318, 4385: 2440259, 4387: 2440315, 4401: 2440613}
[2025-06-03 23:20:21] 2025-06-04 03:20:01,337 | INFO     | --------------------------------------------------
[2025-06-03 23:20:21] 2025-06-04 03:20:01,337 | INFO     | 
[2025-06-03 23:20:21] 2025-06-04 03:20:01,337 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 23:20:21] 2025-06-04 03:20:01,370 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,370 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,371 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:20:21] 2025-06-04 03:20:01,372 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,372 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:20:21] 2025-06-04 03:20:01,372 | INFO     | job 6678074429 has completed (purged errors)
[2025-06-03 23:20:21] 2025-06-04 03:20:01,372 | INFO     | overall cleanup function is called
[2025-06-03 23:20:21] 2025-06-04 03:20:02,380 | INFO     | --- collectZombieJob: --- 10, [82173]
[2025-06-03 23:20:21] 2025-06-04 03:20:02,380 | INFO     | zombie collector waiting for pid 82173
[2025-06-03 23:20:21] 2025-06-04 03:20:02,380 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:20:21] 2025-06-04 03:20:02,380 | INFO     | collected zombie processes
[2025-06-03 23:20:21] 2025-06-04 03:20:02,380 | INFO     | will attempt to kill all subprocesses of pid=82173
[2025-06-03 23:20:21] 2025-06-04 03:20:02,716 | INFO     | process IDs to be killed: [82173] (in reverse order)
[2025-06-03 23:20:21] 2025-06-04 03:20:02,839 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:20:21] 2025-06-04 03:20:02,839 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:20:21] 2025-06-04 03:20:02,850 | INFO     | did not find any defunct processes belonging to 82173
[2025-06-03 23:20:21] 2025-06-04 03:20:02,858 | INFO     | did not find any defunct processes belonging to 82173
[2025-06-03 23:20:21] 2025-06-04 03:20:02,858 | INFO     | ready for new job
[2025-06-03 23:20:21] 2025-06-04 03:20:02,858 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:20:21] 2025-06-04 03:20:02,859 | INFO     | **************************************
[2025-06-03 23:20:21] 2025-06-04 03:20:02,859 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:20:21] 2025-06-04 03:20:02,859 | INFO     | **************************************
[2025-06-03 23:20:21] 2025-06-04 03:20:02,860 | INFO     | 
[2025-06-03 23:20:21] 2025-06-04 03:20:02,863 | INFO     | architecture information:
[2025-06-03 23:20:21] 2025-06-04 03:20:02,864 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:20:21] 2025-06-04 03:20:02,952 | INFO     | cat /etc/os-release:
[2025-06-03 23:20:21] NAME="CentOS Linux"
[2025-06-03 23:20:21] VERSION="7 (Core)"
[2025-06-03 23:20:21] ID="centos"
[2025-06-03 23:20:21] ID_LIKE="rhel fedora"
[2025-06-03 23:20:21] VERSION_ID="7"
[2025-06-03 23:20:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:20:21] ANSI_COLOR="0;31"
[2025-06-03 23:20:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:20:21] HOME_URL="https://www.centos.org/"
[2025-06-03 23:20:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:20:21] 
[2025-06-03 23:20:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:20:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:20:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:20:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:20:21] 
[2025-06-03 23:20:21] 2025-06-04 03:20:02,952 | INFO     | **************************************
[2025-06-03 23:20:21] 2025-06-04 03:20:03,456 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 23:20:21] 2025-06-04 03:20:03,581 | INFO     | sufficient remaining disk space (104242085888 B)
[2025-06-03 23:20:21] 2025-06-04 03:20:03,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:20:21] 2025-06-04 03:20:03,582 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:20:21] 2025-06-04 03:20:03,582 | INFO     | update_server=False
[2025-06-03 23:20:21] 2025-06-04 03:20:03,582 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:20:21] 2025-06-04 03:20:03,582 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:20:21] 2025-06-04 03:20:03,652 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:20:21] 2025-06-04 03:20:03,652 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:20:21] 2025-06-04 03:20:03,652 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:20:21] 2025-06-04 03:20:03,699 | INFO     | all data control threads have been joined
[2025-06-03 23:20:21] 2025-06-04 03:20:03,836 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:20:21] 2025-06-04 03:20:03,836 | INFO     | aborting loop
[2025-06-03 23:20:21] 2025-06-04 03:20:04,276 | INFO     | all job control threads have been joined
[2025-06-03 23:20:21] 2025-06-04 03:20:04,300 | INFO     | all payload control threads have been joined
[2025-06-03 23:20:21] 2025-06-04 03:20:04,588 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:04,704 | INFO     | [data] control thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:04,723 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:04,769 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:04,842 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:04,890 | INFO     | [job] validate thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:04,902 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:05,212 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:05,282 | INFO     | [job] control thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:05,306 | INFO     | [payload] control thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:05,552 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:05,590 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:05,900 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:06,350 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:20:21] 2025-06-04 03:20:07,070 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:20:21] 2025-06-04 03:20:07,356 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:11,077 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:13,941 | INFO     | job.realtimelogging is not enabled
[2025-06-03 23:20:21] 2025-06-04 03:20:14,946 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:20:21] 2025-06-04 03:20:15,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140352436418368)>', '<ExcThread(monitor, started 140351838856960)>']
[2025-06-03 23:20:21] 2025-06-04 03:20:15,721 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:20:21] 2025-06-04 03:20:15,721 | INFO     | [monitor] control thread has ended
[2025-06-03 23:20:21] 2025-06-04 03:20:20,419 | INFO     | all workflow threads have been joined
[2025-06-03 23:20:21] 2025-06-04 03:20:20,419 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:20:21] 2025-06-04 03:20:20,419 | INFO     | traces error code: 0
[2025-06-03 23:20:21] 2025-06-04 03:20:20,419 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:20:21] 2025-06-04 03:20:20,648 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:20:21] 2025-06-04 03:20:20,650 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:20:21] 2025-06-04 03:20:20,652 [wrapper] pilotpid: 72538
[2025-06-03 23:20:21] 2025-06-04 03:20:20,653 [wrapper] Pilot exit status: 0
[2025-06-03 23:20:21] 2025-06-04 03:20:20,666 [wrapper] pandaids: 6678074429
[2025-06-03 23:20:21] 2025-06-04 03:20:20,743 [wrapper] cleanup supervisor_pilot 80581 72539
[2025-06-03 23:20:21] 2025-06-04 03:20:20,747 [wrapper] Test setup, not cleaning
[2025-06-03 23:20:21] 2025-06-04 03:20:20,750 [wrapper] apfmon messages muted
[2025-06-03 23:20:21] 2025-06-04 03:20:20,752 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:20:21] 2025-06-04 03:20:20,754 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:20:21]  *** Error codes and diagnostics ***
[2025-06-03 23:20:21]     "exeErrorCode": 0,
[2025-06-03 23:20:21]     "exeErrorDiag": "",
[2025-06-03 23:20:21]     "pilotErrorCode": 0,
[2025-06-03 23:20:21]     "pilotErrorDiag": "",
[2025-06-03 23:20:21]  *** Listing of results directory ***
[2025-06-03 23:20:21] total 389744
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 17:15 pilot3.tar.gz
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 17:27 queuedata.json
[2025-06-03 23:20:21] -rwx------ 1 boincer umatlas     37140 Jun  3 17:27 runpilot2-wrapper.sh
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas       100 Jun  3 22:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:20:21] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 22:05 run_atlas
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas       105 Jun  3 22:05 job.xml
[2025-06-03 23:20:21] -rw-r--r-- 2 boincer umatlas 214664949 Jun  3 22:05 EVNT.45006593._001843.pool.root.1
[2025-06-03 23:20:21] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 22:05 start_atlas.sh
[2025-06-03 23:20:21] drwxrwx--x 2 boincer umatlas      4096 Jun  3 22:05 shared
[2025-06-03 23:20:21] -rw-r--r-- 2 boincer umatlas    508879 Jun  3 22:05 input.tar.gz
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas         0 Jun  3 22:05 boinc_lockfile
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas      2524 Jun  3 22:05 pandaJob.out
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas    986077 Jun  3 22:06 agis_schedconf.cvmfs.json
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas   1603667 Jun  3 22:06 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:20:21] drwx------ 4 boincer umatlas      4096 Jun  3 22:06 pilot3
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas 179124748 Jun  3 23:19 HITS.45006595._045942.pool.root.1
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas       529 Jun  3 23:19 boinc_task_state.xml
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas      1068 Jun  3 23:19 memory_monitor_summary.json
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas        95 Jun  3 23:19 pilot_heartbeat.json
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas    295838 Jun  3 23:19 log.45006595._045942.job.log.tgz.1
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas      6387 Jun  3 23:19 init_data.xml
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas      7738 Jun  3 23:20 heartbeat.json
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas      4426 Jun  3 23:20 pilotlog.txt
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas        27 Jun  3 23:20 wrapper_checkpoint.txt
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 23:20 boinc_mmap_file
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas    438969 Jun  3 23:20 log.45006595._045942.job.log.1
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas       357 Jun  3 23:20 output.list
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas       620 Jun  3 23:20 runtime_log
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas    757760 Jun  3 23:20 result.tar.gz
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas      8659 Jun  3 23:20 runtime_log.err
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas       659 Jun  3 23:20 EZiMDmOLog7n9Rq4apOajLDm4fhM0noT9bVof3QYDmjyZKDm4kiYim.diag
[2025-06-03 23:20:21] -rw-r--r-- 1 boincer umatlas     22125 Jun  3 23:20 stderr.txt
[2025-06-03 23:20:21] HITS file was successfully produced:
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas 179124748 Jun  3 23:19 shared/HITS.pool.root.1
[2025-06-03 23:20:21]  *** Contents of shared directory: ***
[2025-06-03 23:20:21] total 385824
[2025-06-03 23:20:21] -rw-r--r-- 2 boincer umatlas 214664949 Jun  3 22:05 ATLAS.root_0
[2025-06-03 23:20:21] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 22:05 start_atlas.sh
[2025-06-03 23:20:21] -rw-r--r-- 2 boincer umatlas    508879 Jun  3 22:05 input.tar.gz
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas 179124748 Jun  3 23:19 HITS.pool.root.1
[2025-06-03 23:20:21] -rw------- 1 boincer umatlas    757760 Jun  3 23:20 result.tar.gz
23:20:22 (66750): run_atlas exited; CPU time 28643.712009
23:20:22 (66750): called boinc_finish(0)

</stderr_txt>
]]>

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