Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:59:54 (59037): wrapper (7.7.26015): starting
21:59:54 (59037): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 21:59:54] Arguments: --nthreads 8
[2025-06-03 21:59:54] Threads: 8
[2025-06-03 21:59:54] Checking for CVMFS
[2025-06-03 21:59:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 21:59:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 21:59:54] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 21:59:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 21:59:55] 2.11.2.0 74184 12066 329948 146763 0 370 12037130 18432001 12861 130560 0 68969784 99.597 54694039 42006 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 21:59:55] CVMFS is ok
[2025-06-03 21:59:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 21:59:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 21:59:55] Further information can be found at the LHC@home message board.
[2025-06-03 21:59:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 21:59:55] Checking for apptainer binary...
[2025-06-03 21:59:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 21:59:55] Running /usr/bin/apptainer --version
[2025-06-03 21:59:55] apptainer version 1.3.2-1.el7
[2025-06-03 21:59:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 21:59:56] c-212-13.aglt2.org
[2025-06-03 21:59:56] apptainer works
[2025-06-03 21:59:56] Set ATHENA_PROC_NUMBER=8
[2025-06-03 21:59:56] Set ATHENA_CORE_NUMBER=8
[2025-06-03 21:59:56] Starting ATLAS job with PandaID=6678074432
[2025-06-03 21:59:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:05:37]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:05:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/5d/log.45006595._045945.job.log.tgz.1
[2025-06-03 23:05:37]  workdir=None
[2025-06-03 23:05:37] ]
[2025-06-03 23:05:37] 2025-06-04 03:04:56,640 | INFO     | transferring file log.45006595._045945.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678074432/log.45006595._045945.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 23:05:37] 2025-06-04 03:04:56,640 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678074432/log.45006595._045945.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._045945.job
[2025-06-03 23:05:37] 2025-06-04 03:04:56,678 | INFO     | adding to output.list: log.45006595._045945.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/5d/log.45006595._045945.job.log.tg
[2025-06-03 23:05:37] 2025-06-04 03:04:56,679 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 23:05:37] 2025-06-04 03:04:56,679 | INFO     | summary of transferred files:
[2025-06-03 23:05:37] 2025-06-04 03:04:56,679 | INFO     |  -- lfn=log.45006595._045945.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 23:05:37] 2025-06-04 03:04:56,679 | INFO     | stage-out finished correctly
[2025-06-03 23:05:37] 2025-06-04 03:04:57,352 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 23:05:37] 2025-06-04 03:04:57,395 | INFO     | job 6678074432 has state=finished
[2025-06-03 23:05:37] 2025-06-04 03:04:57,396 | INFO     | preparing for final server update for job 6678074432 in state='finished'
[2025-06-03 23:05:37] 2025-06-04 03:04:57,396 | INFO     | this job has now completed (state=finished)
[2025-06-03 23:05:37] 2025-06-04 03:04:57,396 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 23:05:37] 2025-06-04 03:04:57,396 | INFO     | log transfer has been attempted: DONE
[2025-06-03 23:05:37] 2025-06-04 03:04:57,396 | INFO     | job 6678074432 has finished - writing final server update
[2025-06-03 23:05:37] 2025-06-04 03:04:57,396 | INFO     | total number of processed events: 400 (read)
[2025-06-03 23:05:37] 2025-06-04 03:04:57,397 | INFO     | executing command: lscpu
[2025-06-03 23:05:37] 2025-06-04 03:04:57,429 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 23:05:37] 2025-06-04 03:04:57,899 | WARNING  | process 72530 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 23:05:37] 2025-06-04 03:04:57,899 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678074432/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:05:37] 2025-06-04 03:04:57,900 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678074432/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:05:37] 2025-06-04 03:04:57,901 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3179717 B
[2025-06-03 23:05:37] 2025-06-04 03:04:57,901 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16022 B
[2025-06-03 23:05:37] 2025-06-04 03:04:57,901 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 23:05:37] 2025-06-04 03:05:04,385 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 23:05:37] 2025-06-04 03:05:04,391 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2644.9539999999984
[2025-06-03 23:05:37] 2025-06-04 03:05:04,399 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678074432/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:05:37] 2025-06-04 03:05:04,400 | INFO     | extracted standard info from prmon json
[2025-06-03 23:05:37] 2025-06-04 03:05:04,400 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:05:37] 2025-06-04 03:05:04,400 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:05:37] 2025-06-04 03:05:04,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:05:37] 2025-06-04 03:05:04,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:05:37] 2025-06-04 03:05:04,401 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:05:37] 2025-06-04 03:05:04,401 | INFO     | sum of square deviations: 57407588.0
[2025-06-03 23:05:37] 2025-06-04 03:05:04,401 | INFO     | sum of deviations: -123976521.99999985
[2025-06-03 23:05:37] 2025-06-04 03:05:04,401 | INFO     | mean x: 1749004455.0
[2025-06-03 23:05:37] 2025-06-04 03:05:04,401 | INFO     | mean y: 2478446.01754386
[2025-06-03 23:05:37] 2025-06-04 03:05:04,401 | INFO     | -- intersect: 3779600893.548439
[2025-06-03 23:05:37] 2025-06-04 03:05:04,401 | INFO     | intersect: 3779600893.548439
[2025-06-03 23:05:37] 2025-06-04 03:05:04,402 | INFO     | chi2: 0.001294735626689721
[2025-06-03 23:05:37] 2025-06-04 03:05:04,402 | INFO     | -- intersect: 3779600893.548439
[2025-06-03 23:05:37] 2025-06-04 03:05:04,402 | INFO     | current memory leak: -2.16 B/s (using 57 data points, chi2=0.00)
[2025-06-03 23:05:37] 2025-06-04 03:05:04,402 | INFO     | could have reported an average CPU frequency of 2644 MHz (6 samples)
[2025-06-03 23:05:37] 2025-06-04 03:05:04,402 | INFO     | ..............................
[2025-06-03 23:05:37] 2025-06-04 03:05:04,402 | INFO     | . Timing measurements:
[2025-06-03 23:05:37] 2025-06-04 03:05:04,403 | INFO     | . get job = 0 s
[2025-06-03 23:05:37] 2025-06-04 03:05:04,403 | INFO     | . initial setup = 2 s
[2025-06-03 23:05:37] 2025-06-04 03:05:04,403 | INFO     | sufficient remaining disk space (104026079232 B)
[2025-06-03 23:05:37] 2025-06-04 03:05:04,403 | INFO     | . payload setup = 7 s
[2025-06-03 23:05:37] 2025-06-04 03:05:04,404 | INFO     | . stage-in = 0 s
[2025-06-03 23:05:37] 2025-06-04 03:05:04,404 | INFO     | . payload execution = 3855 s
[2025-06-03 23:05:37] 2025-06-04 03:05:04,404 | INFO     | . stage-out = 0 s
[2025-06-03 23:05:37] 2025-06-04 03:05:04,404 | INFO     | . log creation = 0 s
[2025-06-03 23:05:37] 2025-06-04 03:05:04,404 | INFO     | ..............................
[2025-06-03 23:05:37] 2025-06-04 03:05:04,403 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-03 23:05:37] 2025-06-04 03:05:04,480 | INFO     | 
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | job summary report
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | --------------------------------------------------
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | PanDA job id: 6678074432
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | task id: 45006595
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | errors: (none)
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | pilot state: finished 
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | transexitcode: 0
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | exeerrorcode: 0
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | exeerrordiag: 
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | exitcode: 0
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | exitmsg: OK
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | cpuconsumptiontime: 26510 s
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | nevents: 400
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | neventsw: 0
[2025-06-03 23:05:37] 2025-06-04 03:05:04,481 | INFO     | pid: 72530
[2025-06-03 23:05:37] 2025-06-04 03:05:04,482 | INFO     | pgrp: 72530
[2025-06-03 23:05:37] 2025-06-04 03:05:04,482 | INFO     | corecount: 8
[2025-06-03 23:05:37] 2025-06-04 03:05:04,482 | INFO     | event service: False
[2025-06-03 23:05:37] 2025-06-04 03:05:04,482 | INFO     | sizes: {0: 2405524, 11: 2405814, 3867: 2431511, 3869: 2440508, 3877: 2440646}
[2025-06-03 23:05:37] 2025-06-04 03:05:04,482 | INFO     | --------------------------------------------------
[2025-06-03 23:05:37] 2025-06-04 03:05:04,482 | INFO     | 
[2025-06-03 23:05:37] 2025-06-04 03:05:04,482 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 23:05:37] 2025-06-04 03:05:04,486 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6678074432: 3474778 B (within 2537553920 B limit)
[2025-06-03 23:05:37] 2025-06-04 03:05:04,487 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6678074432/HITS.45006595._045945.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-03 23:05:37] 2025-06-04 03:05:04,487 | INFO     | total size of present files: 0 B (workdir size: 3474778 B)
[2025-06-03 23:05:37] 2025-06-04 03:05:04,487 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6678074432/HITS.45006595._045945.pool.root.1 since it does not exist
[2025-06-03 23:05:37] 2025-06-04 03:05:04,500 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,500 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,500 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,500 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,500 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,500 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,500 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,500 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | job 6678074432 has completed (purged errors)
[2025-06-03 23:05:37] 2025-06-04 03:05:04,501 | INFO     | overall cleanup function is called
[2025-06-03 23:05:37] 2025-06-04 03:05:04,779 | INFO     | number of running child processes to parent process 72530: 1
[2025-06-03 23:05:37] 2025-06-04 03:05:04,779 | INFO     | maximum number of monitored processes: 6
[2025-06-03 23:05:37] 2025-06-04 03:05:04,779 | INFO     | aborting job monitoring since job object (job id=6678074432) has expired
[2025-06-03 23:05:37] 2025-06-04 03:05:05,083 | INFO     | PID=62960 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 23:05:37] 2025-06-04 03:05:05,083 | INFO     | .. there are 18 such processes running
[2025-06-03 23:05:37] 2025-06-04 03:05:05,505 | INFO     | --- collectZombieJob: --- 10, [72530]
[2025-06-03 23:05:37] 2025-06-04 03:05:05,505 | INFO     | zombie collector waiting for pid 72530
[2025-06-03 23:05:37] 2025-06-04 03:05:05,505 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:05:37] 2025-06-04 03:05:05,505 | INFO     | collected zombie processes
[2025-06-03 23:05:37] 2025-06-04 03:05:05,505 | INFO     | will attempt to kill all subprocesses of pid=72530
[2025-06-03 23:05:37] 2025-06-04 03:05:05,657 | INFO     | process IDs to be killed: [72530] (in reverse order)
[2025-06-03 23:05:37] 2025-06-04 03:05:05,743 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:05:37] 2025-06-04 03:05:05,743 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:05:37] 2025-06-04 03:05:05,752 | INFO     | did not find any defunct processes belonging to 72530
[2025-06-03 23:05:37] 2025-06-04 03:05:05,760 | INFO     | did not find any defunct processes belonging to 72530
[2025-06-03 23:05:37] 2025-06-04 03:05:05,760 | INFO     | ready for new job
[2025-06-03 23:05:37] 2025-06-04 03:05:05,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:05:37] 2025-06-04 03:05:05,762 | INFO     | ***************************************
[2025-06-03 23:05:37] 2025-06-04 03:05:05,762 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-03 23:05:37] 2025-06-04 03:05:05,762 | INFO     | ***************************************
[2025-06-03 23:05:37] 2025-06-04 03:05:05,762 | INFO     | 
[2025-06-03 23:05:37] 2025-06-04 03:05:05,767 | INFO     | architecture information:
[2025-06-03 23:05:37] 2025-06-04 03:05:05,768 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:05:37] 2025-06-04 03:05:05,881 | INFO     | cat /etc/os-release:
[2025-06-03 23:05:37] NAME="CentOS Linux"
[2025-06-03 23:05:37] VERSION="7 (Core)"
[2025-06-03 23:05:37] ID="centos"
[2025-06-03 23:05:37] ID_LIKE="rhel fedora"
[2025-06-03 23:05:37] VERSION_ID="7"
[2025-06-03 23:05:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:05:37] ANSI_COLOR="0;31"
[2025-06-03 23:05:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:05:37] HOME_URL="https://www.centos.org/"
[2025-06-03 23:05:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:05:37] 
[2025-06-03 23:05:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:05:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:05:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:05:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:05:37] 
[2025-06-03 23:05:37] 2025-06-04 03:05:05,882 | INFO     | ***************************************
[2025-06-03 23:05:37] 2025-06-04 03:05:06,384 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 23:05:37] 2025-06-04 03:05:06,469 | INFO     | sufficient remaining disk space (104028176384 B)
[2025-06-03 23:05:37] 2025-06-04 03:05:06,469 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:05:37] 2025-06-04 03:05:06,469 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:05:37] 2025-06-04 03:05:06,469 | INFO     | update_server=False
[2025-06-03 23:05:37] 2025-06-04 03:05:06,469 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:05:37] 2025-06-04 03:05:06,469 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:05:37] 2025-06-04 03:05:06,470 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:05:37] 2025-06-04 03:05:06,470 | INFO     | aborting loop
[2025-06-03 23:05:37] 2025-06-04 03:05:06,697 | INFO     | all job control threads have been joined
[2025-06-03 23:05:37] 2025-06-04 03:05:07,023 | INFO     | all data control threads have been joined
[2025-06-03 23:05:37] 2025-06-04 03:05:07,264 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:05:37] 2025-06-04 03:05:07,469 | INFO     | all payload control threads have been joined
[2025-06-03 23:05:37] 2025-06-04 03:05:07,471 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:07,472 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:07,472 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:07,698 | INFO     | [job] control thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:07,904 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:05:37] 2025-06-04 03:05:08,029 | INFO     | [data] control thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:08,073 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:08,087 | INFO     | [job] validate thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:08,106 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:08,176 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:08,287 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:08,450 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:08,475 | INFO     | [payload] control thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:08,949 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:09,021 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:09,269 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:11,909 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:05:37] 2025-06-04 03:05:12,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140102103455552)>', '<ExcThread(monitor, started 140101648619264)>']
[2025-06-03 23:05:37] 2025-06-04 03:05:17,064 | INFO     | all workflow threads have been joined
[2025-06-03 23:05:37] 2025-06-04 03:05:17,064 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:05:37] 2025-06-04 03:05:17,064 | INFO     | traces error code: 0
[2025-06-03 23:05:37] 2025-06-04 03:05:17,064 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:05:37] 2025-06-04 03:05:37,356 | INFO     | PID=62960 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 23:05:37] 2025-06-04 03:05:37,357 | INFO     | .. there are 18 such processes running
[2025-06-03 23:05:37] 2025-06-04 03:05:37,357 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:05:37] 2025-06-04 03:05:37,357 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:05:37] 2025-06-04 03:05:37,357 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:05:37] 2025-06-04 03:05:37,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:05:37] 2025-06-04 03:05:37,357 | INFO     | [monitor] control thread has ended
[2025-06-03 23:05:37] 2025-06-04 03:05:37,467 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:05:37] 2025-06-04 03:05:37,470 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:05:37] 2025-06-04 03:05:37,504 [wrapper] pilotpid: 62960
[2025-06-03 23:05:37] 2025-06-04 03:05:37,506 [wrapper] Pilot exit status: 0
[2025-06-03 23:05:37] 2025-06-04 03:05:37,516 [wrapper] pandaids: 6678074432
[2025-06-03 23:05:37] 2025-06-04 03:05:37,583 [wrapper] cleanup supervisor_pilot 95910 62961
[2025-06-03 23:05:37] 2025-06-04 03:05:37,585 [wrapper] Test setup, not cleaning
[2025-06-03 23:05:37] 2025-06-04 03:05:37,587 [wrapper] apfmon messages muted
[2025-06-03 23:05:37] 2025-06-04 03:05:37,589 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:05:37] 2025-06-04 03:05:37,591 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:05:37]  *** Error codes and diagnostics ***
[2025-06-03 23:05:37]     "exeErrorCode": 0,
[2025-06-03 23:05:37]     "exeErrorDiag": "",
[2025-06-03 23:05:37]     "pilotErrorCode": 0,
[2025-06-03 23:05:37]     "pilotErrorDiag": "",
[2025-06-03 23:05:37]  *** Listing of results directory ***
[2025-06-03 23:05:37] total 384928
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas    549845 Jun  2 05:40 pilot3.tar.gz
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 17:27 queuedata.json
[2025-06-03 23:05:37] -rwx------ 1 boincer umatlas     37140 Jun  3 17:27 runpilot2-wrapper.sh
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas       100 Jun  3 21:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:05:37] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 21:59 run_atlas
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas       105 Jun  3 21:59 job.xml
[2025-06-03 23:05:37] -rw-r--r-- 2 boincer umatlas 214664949 Jun  3 21:59 EVNT.45006593._001843.pool.root.1
[2025-06-03 23:05:37] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 21:59 start_atlas.sh
[2025-06-03 23:05:37] drwxrwx--x 2 boincer umatlas      4096 Jun  3 21:59 shared
[2025-06-03 23:05:37] -rw-r--r-- 2 boincer umatlas    564115 Jun  3 21:59 input.tar.gz
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas         0 Jun  3 21:59 boinc_lockfile
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas      2524 Jun  3 21:59 pandaJob.out
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas    986077 Jun  3 22:00 agis_schedconf.cvmfs.json
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas   1603667 Jun  3 22:00 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:05:37] drwx------ 6 boincer umatlas      4096 Jun  3 22:00 pilot3
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas      6387 Jun  3 23:00 init_data.xml
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas 174169180 Jun  3 23:04 HITS.45006595._045945.pool.root.1
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas       529 Jun  3 23:04 boinc_task_state.xml
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas      1040 Jun  3 23:04 memory_monitor_summary.json
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas    295462 Jun  3 23:04 log.45006595._045945.job.log.tgz.1
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas      7719 Jun  3 23:05 heartbeat.json
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 23:05 boinc_mmap_file
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas        27 Jun  3 23:05 wrapper_checkpoint.txt
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas        95 Jun  3 23:05 pilot_heartbeat.json
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas       821 Jun  3 23:05 pilotlog.txt
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas    398942 Jun  3 23:05 log.45006595._045945.job.log.1
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas       357 Jun  3 23:05 output.list
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas       620 Jun  3 23:05 runtime_log
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas    716800 Jun  3 23:05 result.tar.gz
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas      8659 Jun  3 23:05 runtime_log.err
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas       657 Jun  3 23:05 mUnMDmOLog7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmyZKDm9H0Zon.diag
[2025-06-03 23:05:37] -rw-r--r-- 1 boincer umatlas     22619 Jun  3 23:05 stderr.txt
[2025-06-03 23:05:37] HITS file was successfully produced:
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas 174169180 Jun  3 23:04 shared/HITS.pool.root.1
[2025-06-03 23:05:37]  *** Contents of shared directory: ***
[2025-06-03 23:05:37] total 381000
[2025-06-03 23:05:37] -rw-r--r-- 2 boincer umatlas 214664949 Jun  3 21:59 ATLAS.root_0
[2025-06-03 23:05:37] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 21:59 start_atlas.sh
[2025-06-03 23:05:37] -rw-r--r-- 2 boincer umatlas    564115 Jun  3 21:59 input.tar.gz
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas 174169180 Jun  3 23:04 HITS.pool.root.1
[2025-06-03 23:05:37] -rw------- 1 boincer umatlas    716800 Jun  3 23:05 result.tar.gz
23:05:38 (59037): run_atlas exited; CPU time 26459.655300
23:05:38 (59037): called boinc_finish(0)

</stderr_txt>
]]>

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