Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:56:06 (3999908): wrapper (7.7.26015): starting
21:56:06 (3999908): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 21:56:06] Arguments: --nthreads 8
[2025-06-03 21:56:06] Threads: 8
[2025-06-03 21:56:06] Checking for CVMFS
[2025-06-03 21:56:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 21:56:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 21:56:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 21:56:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 21:56:06] 2.12.6.0 5676 707 219748 146763 1 283 19431030 32935937 12701 16776704 0 13534969 99.919 1672104 35228 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 21:56:06] CVMFS is ok
[2025-06-03 21:56:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 21:56:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 21:56:06] Further information can be found at the LHC@home message board.
[2025-06-03 21:56:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 21:56:06] Checking for apptainer binary...
[2025-06-03 21:56:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 21:56:06] Running /usr/bin/apptainer --version
[2025-06-03 21:56:06] apptainer version 1.4.1-1.el9
[2025-06-03 21:56:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 21:56:06] c7-3-28.aglt2.org
[2025-06-03 21:56:06] apptainer works
[2025-06-03 21:56:06] Set ATHENA_PROC_NUMBER=8
[2025-06-03 21:56:06] Set ATHENA_CORE_NUMBER=8
[2025-06-03 21:56:06] Starting ATLAS job with PandaID=6666762806
[2025-06-03 21:56:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:15:38]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:15:38]  guid=276c837a-6939-4c01-9027-75e1763895c6
[2025-06-03 23:15:38]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 23:15:38]  is_altstaged=None
[2025-06-03 23:15:38]  is_tar=False
[2025-06-03 23:15:38]  lfn=log.44871837._061862.job.log.tgz.1
[2025-06-03 23:15:38]  mtime=0
[2025-06-03 23:15:38]  protocol_id=None
[2025-06-03 23:15:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 23:15:38]  replicas=None
[2025-06-03 23:15:38]  scope=mc23_13p6TeV
[2025-06-03 23:15:38]  status=None
[2025-06-03 23:15:38]  status_code=0
[2025-06-03 23:15:38]  storage_token=
[2025-06-03 23:15:38]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6666762806/log.44871837._061862.job.log.tgz.1
[2025-06-03 23:15:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3c/30/log.44871837._061862.job.log.tgz.1
[2025-06-03 23:15:38]  workdir=None
[2025-06-03 23:15:38] ]
[2025-06-03 23:15:38] 2025-06-04 03:15:17,770 | INFO     | transferring file log.44871837._061862.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6666762806/log.44871837._061862.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 23:15:38] 2025-06-04 03:15:17,770 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6666762806/log.44871837._061862.job.log.tgz.1 /tmp/boinchome/slots/1/log.44871837._061862.job
[2025-06-03 23:15:38] 2025-06-04 03:15:17,796 | INFO     | adding to output.list: log.44871837._061862.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3c/30/log.44871837._061862.job.log.tg
[2025-06-03 23:15:38] 2025-06-04 03:15:17,797 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 23:15:38] 2025-06-04 03:15:17,797 | INFO     | summary of transferred files:
[2025-06-03 23:15:38] 2025-06-04 03:15:17,797 | INFO     |  -- lfn=log.44871837._061862.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 23:15:38] 2025-06-04 03:15:17,797 | INFO     | stage-out finished correctly
[2025-06-03 23:15:38] 2025-06-04 03:15:17,877 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 23:15:38] 2025-06-04 03:15:17,952 | INFO     | job 6666762806 has state=finished
[2025-06-03 23:15:38] 2025-06-04 03:15:17,952 | INFO     | preparing for final server update for job 6666762806 in state='finished'
[2025-06-03 23:15:38] 2025-06-04 03:15:17,953 | INFO     | this job has now completed (state=finished)
[2025-06-03 23:15:38] 2025-06-04 03:15:17,953 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 23:15:38] 2025-06-04 03:15:17,953 | INFO     | log transfer has been attempted: DONE
[2025-06-03 23:15:38] 2025-06-04 03:15:17,953 | INFO     | job 6666762806 has finished - writing final server update
[2025-06-03 23:15:38] 2025-06-04 03:15:17,953 | INFO     | total number of processed events: 400 (read)
[2025-06-03 23:15:38] 2025-06-04 03:15:17,972 | INFO     | executing command: lscpu
[2025-06-03 23:15:38] 2025-06-04 03:15:18,068 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 23:15:38] 2025-06-04 03:15:18,921 | INFO     | monitor loop #351: job 0:6666762806 is in state 'finished'
[2025-06-03 23:15:38] 2025-06-04 03:15:18,921 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:15:38] 2025-06-04 03:15:21,425 | INFO     | monitor loop #352: job 0:6666762806 is in state 'finished'
[2025-06-03 23:15:38] 2025-06-04 03:15:21,425 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:15:38] 2025-06-04 03:15:22,790 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 23:15:38] 2025-06-04 03:15:22,790 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6666762806/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:15:38] 2025-06-04 03:15:22,791 | INFO     | extracted standard info from prmon json
[2025-06-03 23:15:38] 2025-06-04 03:15:22,791 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:15:38] 2025-06-04 03:15:22,791 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:15:38] 2025-06-04 03:15:22,792 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:15:38] 2025-06-04 03:15:22,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:15:38] 2025-06-04 03:15:22,793 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:15:38] 2025-06-04 03:15:22,794 | INFO     | sum of square deviations: 110960220.0
[2025-06-03 23:15:38] 2025-06-04 03:15:22,794 | INFO     | sum of deviations: 8769733930.0
[2025-06-03 23:15:38] 2025-06-04 03:15:22,794 | INFO     | mean x: 1749004634.0
[2025-06-03 23:15:38] 2025-06-04 03:15:22,794 | INFO     | mean y: 2145739.4507042253
[2025-06-03 23:15:38] 2025-06-04 03:15:22,794 | INFO     | -- intersect: -138230324262.1141
[2025-06-03 23:15:38] 2025-06-04 03:15:22,794 | INFO     | intersect: -138230324262.1141
[2025-06-03 23:15:38] 2025-06-04 03:15:22,794 | INFO     | chi2: 0.7297238559589779
[2025-06-03 23:15:38] 2025-06-04 03:15:22,794 | INFO     | -- intersect: -138230324262.1141
[2025-06-03 23:15:38] 2025-06-04 03:15:22,794 | INFO     | current memory leak: 79.03 B/s (using 71 data points, chi2=0.73)
[2025-06-03 23:15:38] 2025-06-04 03:15:22,795 | INFO     | ..............................
[2025-06-03 23:15:38] 2025-06-04 03:15:22,795 | INFO     | . Timing measurements:
[2025-06-03 23:15:38] 2025-06-04 03:15:22,795 | INFO     | . get job = 0 s
[2025-06-03 23:15:38] 2025-06-04 03:15:22,795 | INFO     | . initial setup = 2 s
[2025-06-03 23:15:38] 2025-06-04 03:15:22,795 | INFO     | . payload setup = 3 s
[2025-06-03 23:15:38] 2025-06-04 03:15:22,795 | INFO     | . stage-in = 0 s
[2025-06-03 23:15:38] 2025-06-04 03:15:22,795 | INFO     | . payload execution = 4722 s
[2025-06-03 23:15:38] 2025-06-04 03:15:22,795 | INFO     | . stage-out = 0 s
[2025-06-03 23:15:38] 2025-06-04 03:15:22,795 | INFO     | . log creation = 0 s
[2025-06-03 23:15:38] 2025-06-04 03:15:22,795 | INFO     | ..............................
[2025-06-03 23:15:38] 2025-06-04 03:15:22,863 | INFO     | 
[2025-06-03 23:15:38] 2025-06-04 03:15:22,864 | INFO     | job summary report
[2025-06-03 23:15:38] 2025-06-04 03:15:22,864 | INFO     | --------------------------------------------------
[2025-06-03 23:15:38] 2025-06-04 03:15:22,864 | INFO     | PanDA job id: 6666762806
[2025-06-03 23:15:38] 2025-06-04 03:15:22,864 | INFO     | task id: 44871837
[2025-06-03 23:15:38] 2025-06-04 03:15:22,864 | INFO     | errors: (none)
[2025-06-03 23:15:38] 2025-06-04 03:15:22,864 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:15:38] 2025-06-04 03:15:22,864 | INFO     | pilot state: finished 
[2025-06-03 23:15:38] 2025-06-04 03:15:22,864 | INFO     | transexitcode: 0
[2025-06-03 23:15:38] 2025-06-04 03:15:22,864 | INFO     | exeerrorcode: 0
[2025-06-03 23:15:38] 2025-06-04 03:15:22,864 | INFO     | exeerrordiag: 
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | exitcode: 0
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | exitmsg: OK
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | cpuconsumptiontime: 32999 s
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | nevents: 400
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | neventsw: 0
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | pid: 4014137
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | pgrp: 4014137
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | corecount: 8
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | event service: False
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | sizes: {0: 2405234, 2: 2405440, 10: 2405468, 4730: 2431570, 4731: 2440567, 4736: 2440681}
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | --------------------------------------------------
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | 
[2025-06-03 23:15:38] 2025-06-04 03:15:22,865 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-03 23:15:38] 2025-06-04 03:15:22,893 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,894 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,894 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,894 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,894 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,894 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,894 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,895 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:15:38] 2025-06-04 03:15:22,896 | INFO     | job 6666762806 has completed (purged errors)
[2025-06-03 23:15:38] 2025-06-04 03:15:22,896 | INFO     | overall cleanup function is called
[2025-06-03 23:15:38] 2025-06-04 03:15:23,900 | INFO     | --- collectZombieJob: --- 10, [4014137]
[2025-06-03 23:15:38] 2025-06-04 03:15:23,901 | INFO     | zombie collector waiting for pid 4014137
[2025-06-03 23:15:38] 2025-06-04 03:15:23,901 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:15:38] 2025-06-04 03:15:23,901 | INFO     | collected zombie processes
[2025-06-03 23:15:38] 2025-06-04 03:15:23,901 | INFO     | will attempt to kill all subprocesses of pid=4014137
[2025-06-03 23:15:38] 2025-06-04 03:15:24,148 | INFO     | PID=4003623 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-03 23:15:38] 2025-06-04 03:15:24,148 | INFO     | .. there are 15 such processes running
[2025-06-03 23:15:38] 2025-06-04 03:15:24,383 | INFO     | process IDs to be killed: [4014137] (in reverse order)
[2025-06-03 23:15:38] 2025-06-04 03:15:24,507 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:15:38] 2025-06-04 03:15:24,507 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:15:38] 2025-06-04 03:15:24,525 | INFO     | did not find any defunct processes belonging to 4014137
[2025-06-03 23:15:38] 2025-06-04 03:15:24,542 | INFO     | did not find any defunct processes belonging to 4014137
[2025-06-03 23:15:38] 2025-06-04 03:15:24,542 | INFO     | ready for new job
[2025-06-03 23:15:38] 2025-06-04 03:15:24,542 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:15:38] 2025-06-04 03:15:24,544 | INFO     | **************************************
[2025-06-03 23:15:38] 2025-06-04 03:15:24,544 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:15:38] 2025-06-04 03:15:24,544 | INFO     | **************************************
[2025-06-03 23:15:38] 2025-06-04 03:15:24,544 | INFO     | 
[2025-06-03 23:15:38] 2025-06-04 03:15:24,563 | INFO     | architecture information:
[2025-06-03 23:15:38] 2025-06-04 03:15:24,564 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:15:38] 2025-06-04 03:15:24,585 | INFO     | cat /etc/os-release:
[2025-06-03 23:15:38] NAME="CentOS Linux"
[2025-06-03 23:15:38] VERSION="7 (Core)"
[2025-06-03 23:15:38] ID="centos"
[2025-06-03 23:15:38] ID_LIKE="rhel fedora"
[2025-06-03 23:15:38] VERSION_ID="7"
[2025-06-03 23:15:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:15:38] ANSI_COLOR="0;31"
[2025-06-03 23:15:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:15:38] HOME_URL="https://www.centos.org/"
[2025-06-03 23:15:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:15:38] 
[2025-06-03 23:15:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:15:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:15:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:15:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:15:38] 
[2025-06-03 23:15:38] 2025-06-04 03:15:24,585 | INFO     | **************************************
[2025-06-03 23:15:38] 2025-06-04 03:15:25,088 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-03 23:15:38] 2025-06-04 03:15:25,111 | INFO     | sufficient remaining disk space (75631689728 B)
[2025-06-03 23:15:38] 2025-06-04 03:15:25,112 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:15:38] 2025-06-04 03:15:25,112 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:15:38] 2025-06-04 03:15:25,112 | INFO     | update_server=False
[2025-06-03 23:15:38] 2025-06-04 03:15:25,112 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:15:38] 2025-06-04 03:15:25,112 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:15:38] 2025-06-04 03:15:25,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:15:38] 2025-06-04 03:15:25,113 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:15:38] 2025-06-04 03:15:25,114 | INFO     | aborting loop
[2025-06-03 23:15:38] 2025-06-04 03:15:25,114 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:15:38] 2025-06-04 03:15:25,114 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:15:38] 2025-06-04 03:15:25,712 | INFO     | all data control threads have been joined
[2025-06-03 23:15:38] 2025-06-04 03:15:25,749 | INFO     | all payload control threads have been joined
[2025-06-03 23:15:38] 2025-06-04 03:15:25,864 | INFO     | all job control threads have been joined
[2025-06-03 23:15:38] 2025-06-04 03:15:25,892 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:15:38] 2025-06-04 03:15:26,118 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:26,119 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:26,605 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:26,665 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:26,717 | INFO     | [data] control thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:26,754 | INFO     | [payload] control thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:26,824 | INFO     | [job] validate thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:26,870 | INFO     | [job] control thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:26,936 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:26,962 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:27,061 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:27,596 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:27,605 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:27,874 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:15:38] 2025-06-04 03:15:27,897 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:28,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:15:38] 2025-06-04 03:15:28,879 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:32,511 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:15:38] 2025-06-04 03:15:32,971 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139968627066688)>', '<ExcThread(monitor, started 139968118765312)>']
[2025-06-03 23:15:38] 2025-06-04 03:15:33,147 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:15:38] 2025-06-04 03:15:33,147 | INFO     | [monitor] control thread has ended
[2025-06-03 23:15:38] 2025-06-04 03:15:37,993 | INFO     | all workflow threads have been joined
[2025-06-03 23:15:38] 2025-06-04 03:15:37,994 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:15:38] 2025-06-04 03:15:37,994 | INFO     | traces error code: 0
[2025-06-03 23:15:38] 2025-06-04 03:15:37,994 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:15:38] 2025-06-04 03:15:38,107 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:15:38] 2025-06-04 03:15:38,111 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:15:38] 2025-06-04 03:15:38,114 [wrapper] pilotpid: 4003623
[2025-06-03 23:15:38] 2025-06-04 03:15:38,117 [wrapper] Pilot exit status: 0
[2025-06-03 23:15:38] 2025-06-04 03:15:38,128 [wrapper] pandaids: 6666762806
[2025-06-03 23:15:38] 2025-06-04 03:15:38,218 [wrapper] cleanup supervisor_pilot   79341 4003624
[2025-06-03 23:15:38] 2025-06-04 03:15:38,223 [wrapper] Test setup, not cleaning
[2025-06-03 23:15:38] 2025-06-04 03:15:38,227 [wrapper] apfmon messages muted
[2025-06-03 23:15:38] 2025-06-04 03:15:38,231 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:15:38] 2025-06-04 03:15:38,234 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:15:38]  *** Error codes and diagnostics ***
[2025-06-03 23:15:38]     "exeErrorCode": 0,
[2025-06-03 23:15:38]     "exeErrorDiag": "",
[2025-06-03 23:15:38]     "pilotErrorCode": 0,
[2025-06-03 23:15:38]     "pilotErrorDiag": "",
[2025-06-03 23:15:38]  *** Listing of results directory ***
[2025-06-03 23:15:38] total 413676
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas      5111 May 27 00:09 queuedata.json
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas    495897 May 27 00:09 pilot3.tar.gz
[2025-06-03 23:15:38] -rwx------. 1 boincer umatlas     37140 May 27 00:10 runpilot2-wrapper.sh
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas       100 Jun  3 21:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:15:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 21:56 run_atlas
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas       105 Jun  3 21:56 job.xml
[2025-06-03 23:15:38] -rw-r--r--. 2 boincer umatlas 221940816 Jun  3 21:56 EVNT.44871834._002440.pool.root.1
[2025-06-03 23:15:38] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 21:56 start_atlas.sh
[2025-06-03 23:15:38] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 21:56 shared
[2025-06-03 23:15:38] -rw-r--r--. 2 boincer umatlas    508876 Jun  3 21:56 input.tar.gz
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas         0 Jun  3 21:56 boinc_lockfile
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas      2559 Jun  3 21:56 pandaJob.out
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas    986077 Jun  3 21:56 agis_schedconf.cvmfs.json
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas   1603667 Jun  3 21:56 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:15:38] drwx------. 4 boincer umatlas      4096 Jun  3 21:56 pilot3
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas      6933 Jun  3 23:09 init_data.xml
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas       529 Jun  3 23:14 boinc_task_state.xml
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas 196263941 Jun  3 23:14 HITS.44871837._061862.pool.root.1
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas        95 Jun  3 23:14 pilot_heartbeat.json
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas      1031 Jun  3 23:15 memory_monitor_summary.json
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas    317926 Jun  3 23:15 log.44871837._061862.job.log.tgz.1
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas      7684 Jun  3 23:15 heartbeat.json
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 23:15 boinc_mmap_file
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas        27 Jun  3 23:15 wrapper_checkpoint.txt
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas      4476 Jun  3 23:15 pilotlog.txt
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas    465055 Jun  3 23:15 log.44871837._061862.job.log.1
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas       357 Jun  3 23:15 output.list
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas       620 Jun  3 23:15 runtime_log
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas    798720 Jun  3 23:15 result.tar.gz
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas      8654 Jun  3 23:15 runtime_log.err
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas       651 Jun  3 23:15 DGYNDmUp0d7n9Rq4apOajLDm4fhM0noT9bVof3QYDm6HRKDm7abnMo.diag
[2025-06-03 23:15:38] -rw-r--r--. 1 boincer umatlas     21374 Jun  3 23:15 stderr.txt
[2025-06-03 23:15:38] HITS file was successfully produced:
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas 196263941 Jun  3 23:14 shared/HITS.pool.root.1
[2025-06-03 23:15:38]  *** Contents of shared directory: ***
[2025-06-03 23:15:38] total 409712
[2025-06-03 23:15:38] -rw-r--r--. 2 boincer umatlas 221940816 Jun  3 21:56 ATLAS.root_0
[2025-06-03 23:15:38] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 21:56 start_atlas.sh
[2025-06-03 23:15:38] -rw-r--r--. 2 boincer umatlas    508876 Jun  3 21:56 input.tar.gz
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas 196263941 Jun  3 23:14 HITS.pool.root.1
[2025-06-03 23:15:38] -rw-------. 1 boincer umatlas    798720 Jun  3 23:15 result.tar.gz
23:15:39 (3999908): run_atlas exited; CPU time 33145.561743
23:15:39 (3999908): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN