Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:09:36 (657936): wrapper (7.7.26015): starting
22:09:36 (657936): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 22:09:36] Arguments: --nthreads 12
[2025-06-03 22:09:36] Threads: 12
[2025-06-03 22:09:36] Checking for CVMFS
[2025-06-03 22:09:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 22:09:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 22:09:36] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 22:09:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 22:09:36] 2.12.6.0 5181 147 71912 146764 0 69 23542921 32935937 7352 16776704 0 1202364 99.277 2262380 25420 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 22:09:36] CVMFS is ok
[2025-06-03 22:09:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 22:09:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 22:09:36] Further information can be found at the LHC@home message board.
[2025-06-03 22:09:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 22:09:36] Checking for apptainer binary...
[2025-06-03 22:09:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 22:09:36] Running /usr/bin/apptainer --version
[2025-06-03 22:09:36] apptainer version 1.4.1-1.el9
[2025-06-03 22:09:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 22:09:36] c6-1-24-3.aglt2.org
[2025-06-03 22:09:36] apptainer works
[2025-06-03 22:09:36] Set ATHENA_PROC_NUMBER=12
[2025-06-03 22:09:36] Set ATHENA_CORE_NUMBER=12
[2025-06-03 22:09:36] Starting ATLAS job with PandaID=6677919798
[2025-06-03 22:09:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:13:02]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:13:02]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 23:13:02]  is_altstaged=None
[2025-06-03 23:13:02]  is_tar=False
[2025-06-03 23:13:02]  lfn=log.45006595._041724.job.log.tgz.1
[2025-06-03 23:13:02]  mtime=0
[2025-06-03 23:13:02]  protocol_id=None
[2025-06-03 23:13:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 23:13:02]  replicas=None
[2025-06-03 23:13:02]  scope=mc23_13p6TeV
[2025-06-03 23:13:02]  status=None
[2025-06-03 23:13:02]  status_code=0
[2025-06-03 23:13:02]  storage_token=
[2025-06-03 23:13:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677919798/log.45006595._041724.job.log.tgz.1
[2025-06-03 23:13:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/97/log.45006595._041724.job.log.tgz.1
[2025-06-03 23:13:02]  workdir=None
[2025-06-03 23:13:02] ]
[2025-06-03 23:13:02] 2025-06-04 03:12:34,445 | INFO     | transferring file log.45006595._041724.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677919798/log.45006595._041724.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 23:13:02] 2025-06-04 03:12:34,445 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677919798/log.45006595._041724.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._041724.job
[2025-06-03 23:13:02] 2025-06-04 03:12:34,462 | INFO     | adding to output.list: log.45006595._041724.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/97/log.45006595._041724.job.log.tg
[2025-06-03 23:13:02] 2025-06-04 03:12:34,463 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 23:13:02] 2025-06-04 03:12:34,463 | INFO     | summary of transferred files:
[2025-06-03 23:13:02] 2025-06-04 03:12:34,463 | INFO     |  -- lfn=log.45006595._041724.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 23:13:02] 2025-06-04 03:12:34,463 | INFO     | stage-out finished correctly
[2025-06-03 23:13:02] 2025-06-04 03:12:36,693 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 23:13:02] 2025-06-04 03:12:37,754 | INFO     | job 6677919798 has state=finished
[2025-06-03 23:13:02] 2025-06-04 03:12:37,755 | INFO     | preparing for final server update for job 6677919798 in state='finished'
[2025-06-03 23:13:02] 2025-06-04 03:12:37,756 | INFO     | this job has now completed (state=finished)
[2025-06-03 23:13:02] 2025-06-04 03:12:37,756 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 23:13:02] 2025-06-04 03:12:37,756 | INFO     | log transfer has been attempted: DONE
[2025-06-03 23:13:02] 2025-06-04 03:12:37,756 | INFO     | job 6677919798 has finished - writing final server update
[2025-06-03 23:13:02] 2025-06-04 03:12:37,757 | INFO     | total number of processed events: 400 (read)
[2025-06-03 23:13:02] 2025-06-04 03:12:37,773 | INFO     | executing command: lscpu
[2025-06-03 23:13:02] 2025-06-04 03:12:37,825 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 23:13:02] 2025-06-04 03:12:39,149 | INFO     | PID=661583 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-03 23:13:02] 2025-06-04 03:12:39,150 | INFO     | .. there are 8 such processes running
[2025-06-03 23:13:02] 2025-06-04 03:12:40,785 | WARNING  | process 668873 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 23:13:02] 2025-06-04 03:12:40,786 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677919798/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:13:02] 2025-06-04 03:12:41,030 | INFO     | number of running child processes to parent process 668873: 1
[2025-06-03 23:13:02] 2025-06-04 03:12:41,030 | INFO     | maximum number of monitored processes: 6
[2025-06-03 23:13:02] 2025-06-04 03:12:41,498 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 23:13:02] 2025-06-04 03:12:41,499 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677919798/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:13:02] 2025-06-04 03:12:41,500 | INFO     | extracted standard info from prmon json
[2025-06-03 23:13:02] 2025-06-04 03:12:41,500 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:13:02] 2025-06-04 03:12:41,500 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:13:02] 2025-06-04 03:12:41,500 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:13:02] 2025-06-04 03:12:41,501 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:13:02] 2025-06-04 03:12:41,502 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:13:02] 2025-06-04 03:12:41,503 | INFO     | sum of square deviations: 51573060.0
[2025-06-03 23:13:02] 2025-06-04 03:12:41,503 | INFO     | sum of deviations: 9698613748.0
[2025-06-03 23:13:02] 2025-06-04 03:12:41,503 | INFO     | mean x: 1749004964.0
[2025-06-03 23:13:02] 2025-06-04 03:12:41,503 | INFO     | mean y: 2429322.8363636364
[2025-06-03 23:13:02] 2025-06-04 03:12:41,503 | INFO     | -- intersect: -328908121828.6882
[2025-06-03 23:13:02] 2025-06-04 03:12:41,503 | INFO     | intersect: -328908121828.6882
[2025-06-03 23:13:02] 2025-06-04 03:12:41,504 | INFO     | chi2: 0.7952065100475408
[2025-06-03 23:13:02] 2025-06-04 03:12:41,504 | INFO     | -- intersect: -328908121828.6882
[2025-06-03 23:13:02] 2025-06-04 03:12:41,504 | INFO     | current memory leak: 188.06 B/s (using 55 data points, chi2=0.80)
[2025-06-03 23:13:02] 2025-06-04 03:12:41,504 | INFO     | ..............................
[2025-06-03 23:13:02] 2025-06-04 03:12:41,504 | INFO     | . Timing measurements:
[2025-06-03 23:13:02] 2025-06-04 03:12:41,504 | INFO     | . get job = 0 s
[2025-06-03 23:13:02] 2025-06-04 03:12:41,505 | INFO     | . initial setup = 2 s
[2025-06-03 23:13:02] 2025-06-04 03:12:41,505 | INFO     | . payload setup = 6 s
[2025-06-03 23:13:02] 2025-06-04 03:12:41,505 | INFO     | . stage-in = 0 s
[2025-06-03 23:13:02] 2025-06-04 03:12:41,505 | INFO     | . payload execution = 3742 s
[2025-06-03 23:13:02] 2025-06-04 03:12:41,505 | INFO     | . stage-out = 0 s
[2025-06-03 23:13:02] 2025-06-04 03:12:41,505 | INFO     | . log creation = 0 s
[2025-06-03 23:13:02] 2025-06-04 03:12:41,505 | INFO     | ..............................
[2025-06-03 23:13:02] 2025-06-04 03:12:42,041 | INFO     | 
[2025-06-03 23:13:02] 2025-06-04 03:12:42,041 | INFO     | job summary report
[2025-06-03 23:13:02] 2025-06-04 03:12:42,042 | INFO     | --------------------------------------------------
[2025-06-03 23:13:02] 2025-06-04 03:12:42,042 | INFO     | PanDA job id: 6677919798
[2025-06-03 23:13:02] 2025-06-04 03:12:42,042 | INFO     | task id: 45006595
[2025-06-03 23:13:02] 2025-06-04 03:12:42,042 | INFO     | errors: (none)
[2025-06-03 23:13:02] 2025-06-04 03:12:42,042 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:13:02] 2025-06-04 03:12:42,042 | INFO     | pilot state: finished 
[2025-06-03 23:13:02] 2025-06-04 03:12:42,042 | INFO     | transexitcode: 0
[2025-06-03 23:13:02] 2025-06-04 03:12:42,042 | INFO     | exeerrorcode: 0
[2025-06-03 23:13:02] 2025-06-04 03:12:42,042 | INFO     | exeerrordiag: 
[2025-06-03 23:13:02] 2025-06-04 03:12:42,043 | INFO     | exitcode: 0
[2025-06-03 23:13:02] 2025-06-04 03:12:42,043 | INFO     | exitmsg: OK
[2025-06-03 23:13:02] 2025-06-04 03:12:42,043 | INFO     | cpuconsumptiontime: 33338 s
[2025-06-03 23:13:02] 2025-06-04 03:12:42,043 | INFO     | nevents: 400
[2025-06-03 23:13:02] 2025-06-04 03:12:42,043 | INFO     | neventsw: 0
[2025-06-03 23:13:02] 2025-06-04 03:12:42,043 | INFO     | pid: 668873
[2025-06-03 23:13:02] 2025-06-04 03:12:42,043 | INFO     | pgrp: 668873
[2025-06-03 23:13:02] 2025-06-04 03:12:42,043 | INFO     | corecount: 12
[2025-06-03 23:13:02] 2025-06-04 03:12:42,043 | INFO     | event service: False
[2025-06-03 23:13:02] 2025-06-04 03:12:42,043 | INFO     | sizes: {0: 2405182, 4: 2405388, 11: 2405416, 3752: 2431126, 3753: 2440067, 3755: 2440123, 3760: 2440421}
[2025-06-03 23:13:02] 2025-06-04 03:12:42,043 | INFO     | --------------------------------------------------
[2025-06-03 23:13:02] 2025-06-04 03:12:42,044 | INFO     | 
[2025-06-03 23:13:02] 2025-06-04 03:12:42,044 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 23:13:02] 2025-06-04 03:12:42,061 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,062 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,062 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,062 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,062 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,062 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,062 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,062 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,062 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,062 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,063 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,063 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,063 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,063 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,063 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,063 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,063 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:13:02] 2025-06-04 03:12:42,063 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,063 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:13:02] 2025-06-04 03:12:42,064 | INFO     | job 6677919798 has completed (purged errors)
[2025-06-03 23:13:02] 2025-06-04 03:12:42,064 | INFO     | overall cleanup function is called
[2025-06-03 23:13:02] 2025-06-04 03:12:43,072 | INFO     | --- collectZombieJob: --- 10, [668873]
[2025-06-03 23:13:02] 2025-06-04 03:12:43,072 | INFO     | zombie collector waiting for pid 668873
[2025-06-03 23:13:02] 2025-06-04 03:12:43,072 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:13:02] 2025-06-04 03:12:43,073 | INFO     | collected zombie processes
[2025-06-03 23:13:02] 2025-06-04 03:12:43,073 | INFO     | will attempt to kill all subprocesses of pid=668873
[2025-06-03 23:13:02] 2025-06-04 03:12:43,271 | INFO     | process IDs to be killed: [668873] (in reverse order)
[2025-06-03 23:13:02] 2025-06-04 03:12:43,344 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:13:02] 2025-06-04 03:12:43,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:13:02] 2025-06-04 03:12:43,352 | INFO     | did not find any defunct processes belonging to 668873
[2025-06-03 23:13:02] 2025-06-04 03:12:43,361 | INFO     | did not find any defunct processes belonging to 668873
[2025-06-03 23:13:02] 2025-06-04 03:12:43,361 | INFO     | ready for new job
[2025-06-03 23:13:02] 2025-06-04 03:12:43,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:13:02] 2025-06-04 03:12:43,363 | INFO     | **************************************
[2025-06-03 23:13:02] 2025-06-04 03:12:43,364 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:13:02] 2025-06-04 03:12:43,364 | INFO     | **************************************
[2025-06-03 23:13:02] 2025-06-04 03:12:43,364 | INFO     | 
[2025-06-03 23:13:02] 2025-06-04 03:12:43,379 | INFO     | architecture information:
[2025-06-03 23:13:02] 2025-06-04 03:12:43,379 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:13:02] 2025-06-04 03:12:43,392 | INFO     | cat /etc/os-release:
[2025-06-03 23:13:02] NAME="CentOS Linux"
[2025-06-03 23:13:02] VERSION="7 (Core)"
[2025-06-03 23:13:02] ID="centos"
[2025-06-03 23:13:02] ID_LIKE="rhel fedora"
[2025-06-03 23:13:02] VERSION_ID="7"
[2025-06-03 23:13:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:13:02] ANSI_COLOR="0;31"
[2025-06-03 23:13:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:13:02] HOME_URL="https://www.centos.org/"
[2025-06-03 23:13:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:13:02] 
[2025-06-03 23:13:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:13:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:13:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:13:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:13:02] 
[2025-06-03 23:13:02] 2025-06-04 03:12:43,392 | INFO     | **************************************
[2025-06-03 23:13:02] 2025-06-04 03:12:43,894 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 23:13:02] 2025-06-04 03:12:43,910 | INFO     | sufficient remaining disk space (76374081536 B)
[2025-06-03 23:13:02] 2025-06-04 03:12:43,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:13:02] 2025-06-04 03:12:43,910 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:13:02] 2025-06-04 03:12:43,911 | INFO     | update_server=False
[2025-06-03 23:13:02] 2025-06-04 03:12:43,911 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:13:02] 2025-06-04 03:12:43,911 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:13:02] 2025-06-04 03:12:43,912 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:13:02] 2025-06-04 03:12:43,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:13:02] 2025-06-04 03:12:43,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:13:02] 2025-06-04 03:12:44,067 | INFO     | all job control threads have been joined
[2025-06-03 23:13:02] 2025-06-04 03:12:44,074 | INFO     | all data control threads have been joined
[2025-06-03 23:13:02] 2025-06-04 03:12:44,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:13:02] 2025-06-04 03:12:44,538 | INFO     | aborting loop
[2025-06-03 23:13:02] 2025-06-04 03:12:44,865 | INFO     | all payload control threads have been joined
[2025-06-03 23:13:02] 2025-06-04 03:12:44,915 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:45,068 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:13:02] 2025-06-04 03:12:45,072 | INFO     | [job] control thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:45,079 | INFO     | [data] control thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:45,252 | INFO     | [job] validate thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:45,263 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:45,406 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:45,543 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:45,549 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:45,612 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:45,871 | INFO     | [payload] control thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:46,038 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:46,084 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:46,607 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:13:02] 2025-06-04 03:12:47,074 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:47,273 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:13:02] 2025-06-04 03:12:47,612 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:51,279 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:54,515 | INFO     | job.realtimelogging is not enabled
[2025-06-03 23:13:02] 2025-06-04 03:12:55,520 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:13:02] 2025-06-04 03:12:57,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140102515058496)>', '<ExcThread(monitor, started 140101883516672)>']
[2025-06-03 23:13:02] 2025-06-04 03:12:57,977 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:13:02] 2025-06-04 03:12:57,977 | INFO     | [monitor] control thread has ended
[2025-06-03 23:13:02] 2025-06-04 03:13:02,452 | INFO     | all workflow threads have been joined
[2025-06-03 23:13:02] 2025-06-04 03:13:02,452 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:13:02] 2025-06-04 03:13:02,452 | INFO     | traces error code: 0
[2025-06-03 23:13:02] 2025-06-04 03:13:02,453 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:13:02] 2025-06-04 03:13:02,616 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:13:02] 2025-06-04 03:13:02,619 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:13:02] 2025-06-04 03:13:02,621 [wrapper] pilotpid: 661583
[2025-06-03 23:13:02] 2025-06-04 03:13:02,625 [wrapper] Pilot exit status: 0
[2025-06-03 23:13:02] 2025-06-04 03:13:02,635 [wrapper] pandaids: 6677919798
[2025-06-03 23:13:02] 2025-06-04 03:13:02,687 [wrapper] cleanup supervisor_pilot  848201 661584
[2025-06-03 23:13:02] 2025-06-04 03:13:02,690 [wrapper] Test setup, not cleaning
[2025-06-03 23:13:02] 2025-06-04 03:13:02,693 [wrapper] apfmon messages muted
[2025-06-03 23:13:02] 2025-06-04 03:13:02,695 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:13:02] 2025-06-04 03:13:02,697 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:13:02]  *** Error codes and diagnostics ***
[2025-06-03 23:13:02]     "exeErrorCode": 0,
[2025-06-03 23:13:02]     "exeErrorDiag": "",
[2025-06-03 23:13:02]     "pilotErrorCode": 0,
[2025-06-03 23:13:02]     "pilotErrorDiag": "",
[2025-06-03 23:13:02]  *** Listing of results directory ***
[2025-06-03 23:13:02] total 397616
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 13:46 pilot3.tar.gz
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 14:01 queuedata.json
[2025-06-03 23:13:02] -rwx------. 1 boincer umatlas     37140 Jun  3 14:02 runpilot2-wrapper.sh
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas       100 Jun  3 22:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:13:02] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 22:09 run_atlas
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas       105 Jun  3 22:09 job.xml
[2025-06-03 23:13:02] -rw-r--r--. 2 boincer umatlas 218758383 Jun  3 22:09 EVNT.45006593._001673.pool.root.1
[2025-06-03 23:13:02] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 22:09 start_atlas.sh
[2025-06-03 23:13:02] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 22:09 shared
[2025-06-03 23:13:02] -rw-r--r--. 2 boincer umatlas    508882 Jun  3 22:09 input.tar.gz
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas         0 Jun  3 22:09 boinc_lockfile
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas      2524 Jun  3 22:09 pandaJob.out
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas    986077 Jun  3 22:09 agis_schedconf.cvmfs.json
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas   1603667 Jun  3 22:09 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:13:02] drwx------. 4 boincer umatlas      4096 Jun  3 22:09 pilot3
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas      6839 Jun  3 23:09 init_data.xml
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas        95 Jun  3 23:11 pilot_heartbeat.json
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas 183114374 Jun  3 23:12 HITS.45006595._041724.pool.root.1
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas       529 Jun  3 23:12 boinc_task_state.xml
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas      1030 Jun  3 23:12 memory_monitor_summary.json
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas    343984 Jun  3 23:12 log.45006595._041724.job.log.tgz.1
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas      7710 Jun  3 23:12 heartbeat.json
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas        27 Jun  3 23:12 wrapper_checkpoint.txt
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 23:12 boinc_mmap_file
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas      4548 Jun  3 23:13 pilotlog.txt
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas    382333 Jun  3 23:13 log.45006595._041724.job.log.1
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas       357 Jun  3 23:13 output.list
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas       620 Jun  3 23:13 runtime_log
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas    747520 Jun  3 23:13 result.tar.gz
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas      8666 Jun  3 23:13 runtime_log.err
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas       653 Jun  3 23:13 FbzNDmY9kg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUalKDmAkhQ5m.diag
[2025-06-03 23:13:02] -rw-r--r--. 1 boincer umatlas     21413 Jun  3 23:13 stderr.txt
[2025-06-03 23:13:02] HITS file was successfully produced:
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas 183114374 Jun  3 23:12 shared/HITS.pool.root.1
[2025-06-03 23:13:02]  *** Contents of shared directory: ***
[2025-06-03 23:13:02] total 393708
[2025-06-03 23:13:02] -rw-r--r--. 2 boincer umatlas 218758383 Jun  3 22:09 ATLAS.root_0
[2025-06-03 23:13:02] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 22:09 start_atlas.sh
[2025-06-03 23:13:02] -rw-r--r--. 2 boincer umatlas    508882 Jun  3 22:09 input.tar.gz
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas 183114374 Jun  3 23:12 HITS.pool.root.1
[2025-06-03 23:13:02] -rw-------. 1 boincer umatlas    747520 Jun  3 23:13 result.tar.gz
23:13:04 (657936): run_atlas exited; CPU time 33390.643063
23:13:04 (657936): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN