Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
07:06:18 (1648984): wrapper (7.7.26015): starting
07:06:18 (1648984): wrapper: running run_atlas (--nthreads 12)
[2025-06-06 07:06:18] Arguments: --nthreads 12
[2025-06-06 07:06:18] Threads: 12
[2025-06-06 07:06:18] Checking for CVMFS
[2025-06-06 07:06:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-06 07:06:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-06 07:06:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-06 07:06:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-06 07:06:22] 2.12.7.0 359462 4177 63940 146846 0 56 2776015 4096001 912 130560 0 3470091 99.991 952716 127 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-06 07:06:22] CVMFS is ok
[2025-06-06 07:06:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 07:06:22] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-06 07:06:22] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-06 07:06:22] Further information can be found at the LHC@home message board.
[2025-06-06 07:06:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 07:06:22] Checking for apptainer binary...
[2025-06-06 07:06:22] apptainer is not installed, using version from CVMFS
[2025-06-06 07:06:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 07:06:23] ggg3250
[2025-06-06 07:06:23] apptainer works
[2025-06-06 07:06:23] Set ATHENA_PROC_NUMBER=12
[2025-06-06 07:06:23] Set ATHENA_CORE_NUMBER=12
[2025-06-06 07:06:23] Starting ATLAS job with PandaID=6678074308
[2025-06-06 07:06:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 11:46:41]  *** The last 200 lines of the pilot log: ***
[2025-06-06 11:46:41] 2025-06-06 11:46:27,942 | INFO     | intersect: -33790432051.542007
[2025-06-06 11:46:41] 2025-06-06 11:46:27,951 | INFO     | chi2: 5.567821601703049
[2025-06-06 11:46:41] 2025-06-06 11:46:27,951 | INFO     | sum of square deviations: 5770446900.543357
[2025-06-06 11:46:41] 2025-06-06 11:46:27,952 | INFO     | sum of deviations: 134687580555.12839
[2025-06-06 11:46:41] 2025-06-06 11:46:27,952 | INFO     | mean x: 1749201940.0415094
[2025-06-06 11:46:41] 2025-06-06 11:46:27,952 | INFO     | mean y: 2630953.079245283
[2025-06-06 11:46:41] 2025-06-06 11:46:27,952 | INFO     | -- intersect: -40825364047.50615
[2025-06-06 11:46:41] 2025-06-06 11:46:27,952 | INFO     | intersect: -40825364047.50615
[2025-06-06 11:46:41] 2025-06-06 11:46:27,952 | INFO     | chi2: 4.87838294403462
[2025-06-06 11:46:41] 2025-06-06 11:46:27,952 | INFO     | current chi2=4.87838294403462 (change=12.382556536250156 %)
[2025-06-06 11:46:41] 2025-06-06 11:46:27,952 | INFO     | right removable region: 264
[2025-06-06 11:46:41] 2025-06-06 11:46:27,952 | INFO     | sum of square deviations: 5770503158.150925
[2025-06-06 11:46:41] 2025-06-06 11:46:27,953 | INFO     | sum of deviations: 30997396689.905697
[2025-06-06 11:46:41] 2025-06-06 11:46:27,953 | INFO     | mean x: 1749202245.0566037
[2025-06-06 11:46:41] 2025-06-06 11:46:27,954 | INFO     | mean y: 2663145.5396226416
[2025-06-06 11:46:41] 2025-06-06 11:46:27,954 | INFO     | -- intersect: -9393521969.497631
[2025-06-06 11:46:41] 2025-06-06 11:46:27,954 | INFO     | intersect: -9393521969.497631
[2025-06-06 11:46:41] 2025-06-06 11:46:27,954 | INFO     | chi2: 2.020011841357961
[2025-06-06 11:46:41] 2025-06-06 11:46:27,954 | INFO     | current chi2=2.020011841357961 (change=63.719889287758555 %)
[2025-06-06 11:46:41] 2025-06-06 11:46:27,954 | INFO     | sum of square deviations: 5449990248.134642
[2025-06-06 11:46:41] 2025-06-06 11:46:27,963 | INFO     | sum of deviations: -9291059236.903816
[2025-06-06 11:46:41] 2025-06-06 11:46:27,963 | INFO     | mean x: 1749202397.5576923
[2025-06-06 11:46:41] 2025-06-06 11:46:27,963 | INFO     | mean y: 2682279.626923077
[2025-06-06 11:46:41] 2025-06-06 11:46:27,963 | INFO     | -- intersect: 2984695522.4222145
[2025-06-06 11:46:41] 2025-06-06 11:46:27,963 | INFO     | intersect: 2984695522.4222145
[2025-06-06 11:46:41] 2025-06-06 11:46:27,964 | INFO     | chi2: 1.2374071995822735
[2025-06-06 11:46:41] 2025-06-06 11:46:27,964 | INFO     | current chi2=1.2374071995822735 (change=38.74257693705292 %)
[2025-06-06 11:46:41] 2025-06-06 11:46:27,964 | INFO     | sum of square deviations: 5141570588.117676
[2025-06-06 11:46:41] 2025-06-06 11:46:27,965 | INFO     | sum of deviations: -36993559802.05883
[2025-06-06 11:46:41] 2025-06-06 11:46:27,965 | INFO     | mean x: 1749202550.0588236
[2025-06-06 11:46:41] 2025-06-06 11:46:27,965 | INFO     | mean y: 2695951.870588235
[2025-06-06 11:46:41] 2025-06-06 11:46:27,965 | INFO     | -- intersect: 12588194494.098106
[2025-06-06 11:46:41] 2025-06-06 11:46:27,965 | INFO     | intersect: 12588194494.098106
[2025-06-06 11:46:41] 2025-06-06 11:46:27,965 | INFO     | chi2: 0.8568717924450622
[2025-06-06 11:46:41] 2025-06-06 11:46:27,965 | INFO     | current chi2=0.8568717924450622 (change=30.752642078183584 %)
[2025-06-06 11:46:41] 2025-06-06 11:46:27,965 | INFO     | sum of square deviations: 4845011615.600014
[2025-06-06 11:46:41] 2025-06-06 11:46:27,966 | INFO     | sum of deviations: -50423594913.88001
[2025-06-06 11:46:41] 2025-06-06 11:46:27,966 | INFO     | mean x: 1749202702.56
[2025-06-06 11:46:41] 2025-06-06 11:46:27,966 | INFO     | mean y: 2702832.792
[2025-06-06 11:46:41] 2025-06-06 11:46:27,966 | INFO     | -- intersect: 18207218217.679604
[2025-06-06 11:46:41] 2025-06-06 11:46:27,966 | INFO     | intersect: 18207218217.679604
[2025-06-06 11:46:41] 2025-06-06 11:46:27,975 | INFO     | chi2: 0.7329106126402317
[2025-06-06 11:46:41] 2025-06-06 11:46:27,975 | INFO     | current chi2=0.7329106126402317 (change=14.466712628164633 %)
[2025-06-06 11:46:41] 2025-06-06 11:46:27,975 | INFO     | left removable region: 40
[2025-06-06 11:46:41] 2025-06-06 11:46:27,975 | INFO     | sum of square deviations: 3485056951.45983
[2025-06-06 11:46:41] 2025-06-06 11:46:27,976 | INFO     | sum of deviations: -25128786981.99998
[2025-06-06 11:46:41] 2025-06-06 11:46:27,976 | INFO     | mean x: 1749203129.549107
[2025-06-06 11:46:41] 2025-06-06 11:46:27,976 | INFO     | mean y: 2708797.0
[2025-06-06 11:46:41] 2025-06-06 11:46:27,976 | INFO     | -- intersect: 12615229465.35668
[2025-06-06 11:46:41] 2025-06-06 11:46:27,976 | INFO     | intersect: 12615229465.35668
[2025-06-06 11:46:41] 2025-06-06 11:46:27,976 | INFO     | chi2: 0.011842075696102353
[2025-06-06 11:46:41] 2025-06-06 11:46:27,976 | INFO     | -- intersect: 12615229465.35668
[2025-06-06 11:46:41] 2025-06-06 11:46:27,976 | INFO     | current memory leak: -7.21 B/s (using 224 data points, chi2=0.01)
[2025-06-06 11:46:41] 2025-06-06 11:46:27,977 | INFO     | ..............................
[2025-06-06 11:46:41] 2025-06-06 11:46:27,977 | INFO     | . Timing measurements:
[2025-06-06 11:46:41] 2025-06-06 11:46:27,977 | INFO     | . get job = 0 s
[2025-06-06 11:46:41] 2025-06-06 11:46:27,977 | INFO     | . initial setup = 11 s
[2025-06-06 11:46:41] 2025-06-06 11:46:27,977 | INFO     | . payload setup = 101 s
[2025-06-06 11:46:41] 2025-06-06 11:46:27,977 | INFO     | . stage-in = 0 s
[2025-06-06 11:46:41] 2025-06-06 11:46:27,977 | INFO     | . payload execution = 16495 s
[2025-06-06 11:46:41] 2025-06-06 11:46:27,977 | INFO     | . stage-out = 3 s
[2025-06-06 11:46:41] 2025-06-06 11:46:27,977 | INFO     | . log creation = 1 s
[2025-06-06 11:46:41] 2025-06-06 11:46:27,977 | INFO     | ..............................
[2025-06-06 11:46:41] 2025-06-06 11:46:27,974 | INFO     | monitor loop #1230: job 0:6678074308 is in state 'finished'
[2025-06-06 11:46:41] 2025-06-06 11:46:27,994 | WARNING  | exception caught: deque index out of range
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | 
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | job summary report
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | --------------------------------------------------
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | PanDA job id: 6678074308
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | task id: 45006595
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | errors: (none)
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | pilot state: finished 
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | transexitcode: 0
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | exeerrorcode: 0
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | exeerrordiag: 
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | exitcode: 0
[2025-06-06 11:46:41] 2025-06-06 11:46:28,172 | INFO     | exitmsg: OK
[2025-06-06 11:46:41] 2025-06-06 11:46:28,173 | INFO     | cpuconsumptiontime: 21958 s
[2025-06-06 11:46:41] 2025-06-06 11:46:28,173 | INFO     | nevents: 400
[2025-06-06 11:46:41] 2025-06-06 11:46:28,173 | INFO     | neventsw: 0
[2025-06-06 11:46:41] 2025-06-06 11:46:28,173 | INFO     | pid: 1658996
[2025-06-06 11:46:41] 2025-06-06 11:46:28,173 | INFO     | pgrp: 1658996
[2025-06-06 11:46:41] 2025-06-06 11:46:28,173 | INFO     | corecount: 12
[2025-06-06 11:46:41] 2025-06-06 11:46:28,173 | INFO     | event service: False
[2025-06-06 11:46:41] 2025-06-06 11:46:28,173 | INFO     | sizes: {0: 2396513, 1: 2397221, 2: 2397420, 3: 2397420, 14: 2397448, 24: 2397476, 35: 2397632, 39: 2397866, 46: 2397894, 16600: 2428762, 16601: 2428761, 16606: 243
[2025-06-06 11:46:41] 2025-06-06 11:46:28,173 | INFO     | --------------------------------------------------
[2025-06-06 11:46:41] 2025-06-06 11:46:28,173 | INFO     | 
[2025-06-06 11:46:41] 2025-06-06 11:46:28,173 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,355 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,356 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,356 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,356 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,356 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,356 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 11:46:41] 2025-06-06 11:46:28,356 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,356 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 11:46:41] 2025-06-06 11:46:28,356 | INFO     | job 6678074308 has completed (purged errors)
[2025-06-06 11:46:41] 2025-06-06 11:46:28,356 | INFO     | overall cleanup function is called
[2025-06-06 11:46:41] 2025-06-06 11:46:29,362 | INFO     | --- collectZombieJob: --- 10, [1658996]
[2025-06-06 11:46:41] 2025-06-06 11:46:29,363 | INFO     | zombie collector waiting for pid 1658996
[2025-06-06 11:46:41] 2025-06-06 11:46:29,363 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 11:46:41] 2025-06-06 11:46:29,363 | INFO     | collected zombie processes
[2025-06-06 11:46:41] 2025-06-06 11:46:29,363 | INFO     | will attempt to kill all subprocesses of pid=1658996
[2025-06-06 11:46:41] 2025-06-06 11:46:29,582 | INFO     | process IDs to be killed: [1658996] (in reverse order)
[2025-06-06 11:46:41] 2025-06-06 11:46:29,635 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 11:46:41] 2025-06-06 11:46:29,635 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 11:46:41] 2025-06-06 11:46:29,636 | INFO     | did not find any defunct processes belonging to 1658996
[2025-06-06 11:46:41] 2025-06-06 11:46:29,637 | INFO     | did not find any defunct processes belonging to 1658996
[2025-06-06 11:46:41] 2025-06-06 11:46:29,637 | INFO     | ready for new job
[2025-06-06 11:46:41] 2025-06-06 11:46:29,637 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 11:46:41] 2025-06-06 11:46:29,638 | INFO     | **************************************
[2025-06-06 11:46:41] 2025-06-06 11:46:29,638 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 11:46:41] 2025-06-06 11:46:29,638 | INFO     | **************************************
[2025-06-06 11:46:41] 2025-06-06 11:46:29,638 | INFO     | 
[2025-06-06 11:46:41] 2025-06-06 11:46:29,655 | INFO     | architecture information:
[2025-06-06 11:46:41] 2025-06-06 11:46:29,658 | INFO     | executing command: cat /etc/os-release
[2025-06-06 11:46:41] 2025-06-06 11:46:29,675 | INFO     | cat /etc/os-release:
[2025-06-06 11:46:41] NAME="CentOS Linux"
[2025-06-06 11:46:41] VERSION="7 (Core)"
[2025-06-06 11:46:41] ID="centos"
[2025-06-06 11:46:41] ID_LIKE="rhel fedora"
[2025-06-06 11:46:41] VERSION_ID="7"
[2025-06-06 11:46:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 11:46:41] ANSI_COLOR="0;31"
[2025-06-06 11:46:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 11:46:41] HOME_URL="https://www.centos.org/"
[2025-06-06 11:46:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 11:46:41] 
[2025-06-06 11:46:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 11:46:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 11:46:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 11:46:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 11:46:41] 
[2025-06-06 11:46:41] 2025-06-06 11:46:29,675 | INFO     | **************************************
[2025-06-06 11:46:41] 2025-06-06 11:46:30,183 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-06 11:46:41] 2025-06-06 11:46:30,303 | INFO     | sufficient remaining disk space (188451127296 B)
[2025-06-06 11:46:41] 2025-06-06 11:46:30,303 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 11:46:41] 2025-06-06 11:46:30,304 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 11:46:41] 2025-06-06 11:46:30,304 | INFO     | update_server=False
[2025-06-06 11:46:41] 2025-06-06 11:46:30,304 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 11:46:41] 2025-06-06 11:46:30,304 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 11:46:41] 2025-06-06 11:46:30,304 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 11:46:41] 2025-06-06 11:46:30,304 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 11:46:41] 2025-06-06 11:46:30,304 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 11:46:41] 2025-06-06 11:46:30,304 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 11:46:41] 2025-06-06 11:46:30,506 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 11:46:41] 2025-06-06 11:46:30,507 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 11:46:41] 2025-06-06 11:46:30,507 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:46:41] 2025-06-06 11:46:30,507 | INFO     | will abort loop
[2025-06-06 11:46:41] 2025-06-06 11:46:30,574 | INFO     | all payload control threads have been joined
[2025-06-06 11:46:41] 2025-06-06 11:46:30,654 | INFO     | all data control threads have been joined
[2025-06-06 11:46:41] 2025-06-06 11:46:31,102 | INFO     | all job control threads have been joined
[2025-06-06 11:46:41] 2025-06-06 11:46:31,307 | INFO     | [job] retrieve thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:31,319 | INFO     | [payload] validate_post thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:31,419 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:31,439 | INFO     | [job] validate thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:31,519 | INFO     | [job] job monitor thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:31,575 | INFO     | [payload] failed_post thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:31,582 | INFO     | [payload] control thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:31,638 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 11:46:41] 2025-06-06 11:46:31,662 | INFO     | [data] control thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:32,082 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:32,107 | INFO     | [job] control thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:32,107 | INFO     | [data] copytool_in thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:32,311 | INFO     | [data] copytool_out thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:32,462 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:32,610 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:33,190 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 11:46:41] 2025-06-06 11:46:34,194 | INFO     | [job] queue monitor thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:35,654 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 11:46:41] 2025-06-06 11:46:35,670 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139778327545664)>', '<ExcThread(monitor, started 139777747703552)>']
[2025-06-06 11:46:41] 2025-06-06 11:46:36,326 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 11:46:41] 2025-06-06 11:46:36,327 | INFO     | [monitor] control thread has ended
[2025-06-06 11:46:41] 2025-06-06 11:46:40,694 | INFO     | all workflow threads have been joined
[2025-06-06 11:46:41] 2025-06-06 11:46:40,698 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 11:46:41] 2025-06-06 11:46:40,699 | INFO     | traces error code: 0
[2025-06-06 11:46:41] 2025-06-06 11:46:40,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 11:46:41] 2025-06-06 11:46:40,996 [wrapper] ==== pilot stdout END ====
[2025-06-06 11:46:41] 2025-06-06 11:46:41,019 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 11:46:41] 2025-06-06 11:46:41,047 [wrapper] pilotpid: 1652570
[2025-06-06 11:46:41] 2025-06-06 11:46:41,115 [wrapper] Pilot exit status: 0
[2025-06-06 11:46:41] 2025-06-06 11:46:41,215 [wrapper] pandaids: 6678074308
[2025-06-06 11:46:41] 2025-06-06 11:46:41,283 [wrapper] cleanup supervisor_pilot 1721369 1652571
[2025-06-06 11:46:41] 2025-06-06 11:46:41,299 [wrapper] Test setup, not cleaning
[2025-06-06 11:46:41] 2025-06-06 11:46:41,323 [wrapper] apfmon messages muted
[2025-06-06 11:46:41] 2025-06-06 11:46:41,347 [wrapper] ==== wrapper stdout END ====
[2025-06-06 11:46:41] 2025-06-06 11:46:41,398 [wrapper] ==== wrapper stderr END ====
[2025-06-06 11:46:41]  *** Error codes and diagnostics ***
[2025-06-06 11:46:41]     "exeErrorCode": 0,
[2025-06-06 11:46:41]     "exeErrorDiag": "",
[2025-06-06 11:46:41]     "pilotErrorCode": 0,
[2025-06-06 11:46:41]     "pilotErrorDiag": "",
[2025-06-06 11:46:41]  *** Listing of results directory ***
[2025-06-06 11:46:41] total 392024
[2025-06-06 11:46:41] -rw-r--r-- 1 boinc boinc    495897 Jun  3 20:49 pilot3.tar.gz
[2025-06-06 11:46:41] -rw-r--r-- 1 boinc boinc      5111 Jun  3 21:04 queuedata.json
[2025-06-06 11:46:41] -rwx------ 1 boinc boinc     37140 Jun  3 21:06 runpilot2-wrapper.sh
[2025-06-06 11:46:41] -rw-rw-r-- 1 boinc boinc       100 Jun  6 07:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 11:46:41] -rwxr-xr-x 1 boinc boinc      7986 Jun  6 07:06 run_atlas
[2025-06-06 11:46:41] -rw-rw-r-- 1 boinc boinc       105 Jun  6 07:06 job.xml
[2025-06-06 11:46:41] -rw-rw-r-- 1 boinc boinc      9361 Jun  6 07:06 init_data.xml
[2025-06-06 11:46:41] -rw-r--r-- 2 boinc boinc 216372102 Jun  6 07:06 EVNT.45006593._001838.pool.root.1
[2025-06-06 11:46:41] -rw-r--r-- 2 boinc boinc     15093 Jun  6 07:06 start_atlas.sh
[2025-06-06 11:46:41] drwxrwx--x 2 boinc boinc      4096 Jun  6 07:06 shared
[2025-06-06 11:46:41] -rw-r--r-- 2 boinc boinc    508884 Jun  6 07:06 input.tar.gz
[2025-06-06 11:46:41] -rw-rw-r-- 1 boinc boinc         0 Jun  6 07:06 boinc_lockfile
[2025-06-06 11:46:41] -rw-rw-r-- 1 boinc boinc      2524 Jun  6 07:06 pandaJob.out
[2025-06-06 11:46:41] -rw------- 1 boinc boinc    988117 Jun  6 07:07 agis_schedconf.cvmfs.json
[2025-06-06 11:46:41] drwx------ 4 boinc boinc      4096 Jun  6 07:07 pilot3
[2025-06-06 11:46:41] -rw------- 1 boinc boinc 177197251 Jun  6 11:44 HITS.45006595._045821.pool.root.1
[2025-06-06 11:46:41] -rw-rw-r-- 1 boinc boinc       530 Jun  6 11:44 boinc_task_state.xml
[2025-06-06 11:46:41] -rw------- 1 boinc boinc      1020 Jun  6 11:45 memory_monitor_summary.json
[2025-06-06 11:46:41] -rw------- 1 boinc boinc   1598969 Jun  6 11:45 agis_ddmendpoints.agis.ALL.json
[2025-06-06 11:46:41] -rw------- 1 boinc boinc    468710 Jun  6 11:45 log.45006595._045821.job.log.tgz.1
[2025-06-06 11:46:41] -rw-rw-r-- 1 boinc boinc      8192 Jun  6 11:46 boinc_mmap_file
[2025-06-06 11:46:41] -rw-rw-r-- 1 boinc boinc        28 Jun  6 11:46 wrapper_checkpoint.txt
[2025-06-06 11:46:41] -rw------- 1 boinc boinc        95 Jun  6 11:46 pilot_heartbeat.json
[2025-06-06 11:46:41] -rw------- 1 boinc boinc      7670 Jun  6 11:46 heartbeat.json
[2025-06-06 11:46:41] -rw------- 1 boinc boinc      4686 Jun  6 11:46 pilotlog.txt
[2025-06-06 11:46:41] -rw------- 1 boinc boinc   1541647 Jun  6 11:46 log.45006595._045821.job.log.1
[2025-06-06 11:46:41] -rw------- 1 boinc boinc       357 Jun  6 11:46 output.list
[2025-06-06 11:46:41] -rw-rw-r-- 1 boinc boinc       620 Jun  6 11:46 runtime_log
[2025-06-06 11:46:41] -rw------- 1 boinc boinc   2027520 Jun  6 11:46 result.tar.gz
[2025-06-06 11:46:41] -rw-rw-r-- 1 boinc boinc      8959 Jun  6 11:46 runtime_log.err
[2025-06-06 11:46:41] -rw------- 1 boinc boinc       654 Jun  6 11:46 0HsMDmz0ng7n9Rq4apOajLDm4fhM0noT9bVof3QYDm1xZKDm8WCjDm.diag
[2025-06-06 11:46:41] -rw-rw-r-- 1 boinc boinc     21098 Jun  6 11:46 stderr.txt
[2025-06-06 11:46:41] HITS file was successfully produced:
[2025-06-06 11:46:41] -rw------- 1 boinc boinc 177197251 Jun  6 11:44 shared/HITS.pool.root.1
[2025-06-06 11:46:41]  *** Contents of shared directory: ***
[2025-06-06 11:46:41] total 386856
[2025-06-06 11:46:41] -rw-r--r-- 2 boinc boinc 216372102 Jun  6 07:06 ATLAS.root_0
[2025-06-06 11:46:41] -rw-r--r-- 2 boinc boinc     15093 Jun  6 07:06 start_atlas.sh
[2025-06-06 11:46:41] -rw-r--r-- 2 boinc boinc    508884 Jun  6 07:06 input.tar.gz
[2025-06-06 11:46:41] -rw------- 1 boinc boinc 177197251 Jun  6 11:44 HITS.pool.root.1
[2025-06-06 11:46:41] -rw------- 1 boinc boinc   2027520 Jun  6 11:46 result.tar.gz
11:46:43 (1648984): run_atlas exited; CPU time 22028.312060
11:46:43 (1648984): called boinc_finish(0)

</stderr_txt>
]]>

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