Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:02:17 (4917): wrapper (7.7.26015): starting
19:02:17 (4917): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 19:02:17] Arguments: --nthreads 8
[2025-06-04 19:02:17] Threads: 8
[2025-06-04 19:02:17] Checking for CVMFS
[2025-06-04 19:02:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 19:02:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 19:02:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 19:02:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 19:02:20] 2.11.2.0 361 33506 93296 146788 2 159 19284861 25165825 4406 130560 0 16855070 99.793 20169075 2369 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 19:02:20] CVMFS is ok
[2025-06-04 19:02:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 19:02:20] Checking for apptainer binary...
[2025-06-04 19:02:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 19:02:20] Running /usr/bin/apptainer --version
[2025-06-04 19:02:20] apptainer version 1.3.2-1.el7
[2025-06-04 19:02:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 19:02:22] cg-vwn321.simple-grid.lan
[2025-06-04 19:02:22] apptainer works
[2025-06-04 19:02:22] Set ATHENA_PROC_NUMBER=8
[2025-06-04 19:02:22] Set ATHENA_CORE_NUMBER=8
[2025-06-04 19:02:22] Starting ATLAS job with PandaID=6678074247
[2025-06-04 19:02:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 00:39:35]  *** The last 200 lines of the pilot log: ***
[2025-06-05 00:39:35] 2025-06-04 20:45:02,498 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6678074247/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 00:39:35] 2025-06-04 20:45:02,499 | INFO     | extracted standard info from prmon json
[2025-06-05 00:39:35] 2025-06-04 20:45:02,499 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 00:39:35] 2025-06-04 20:45:02,499 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 00:39:35] 2025-06-04 20:45:02,499 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 00:39:35] 2025-06-04 20:45:02,499 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 00:39:35] 2025-06-04 20:45:02,505 | INFO     | fitting pss+swap vs Time
[2025-06-05 00:39:35] 2025-06-04 20:45:02,506 | INFO     | sum of square deviations: 3124858590.0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,508 | INFO     | sum of deviations: 22640865346.999992
[2025-06-05 00:39:35] 2025-06-04 20:45:02,508 | INFO     | mean x: 1749063182.5
[2025-06-05 00:39:35] 2025-06-04 20:45:02,508 | INFO     | mean y: 2449583.527777778
[2025-06-05 00:39:35] 2025-06-04 20:45:02,508 | INFO     | -- intersect: -12670221149.510984
[2025-06-05 00:39:35] 2025-06-04 20:45:02,508 | INFO     | intersect: -12670221149.510984
[2025-06-05 00:39:35] 2025-06-04 20:45:02,509 | INFO     | chi2: 2.429049615586427
[2025-06-05 00:39:35] 2025-06-04 20:45:02,509 | INFO     | sum of square deviations: 2912836010.0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,511 | INFO     | sum of deviations: 36806937376.00001
[2025-06-05 00:39:35] 2025-06-04 20:45:02,511 | INFO     | mean x: 1749063030.0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,511 | INFO     | mean y: 2459572.0047393367
[2025-06-05 00:39:35] 2025-06-04 20:45:02,512 | INFO     | -- intersect: -22098905966.89727
[2025-06-05 00:39:35] 2025-06-04 20:45:02,512 | INFO     | intersect: -22098905966.89727
[2025-06-05 00:39:35] 2025-06-04 20:45:02,512 | INFO     | chi2: 1.579615503675212
[2025-06-05 00:39:35] 2025-06-04 20:45:02,512 | INFO     | current chi2=1.579615503675212 (change=34.969813150817124 %)
[2025-06-05 00:39:35] 2025-06-04 20:45:02,513 | INFO     | sum of square deviations: 2710627567.5
[2025-06-05 00:39:35] 2025-06-04 20:45:02,514 | INFO     | sum of deviations: 35847969429.999985
[2025-06-05 00:39:35] 2025-06-04 20:45:02,515 | INFO     | mean x: 1749062877.5
[2025-06-05 00:39:35] 2025-06-04 20:45:02,515 | INFO     | mean y: 2458848.650485437
[2025-06-05 00:39:35] 2025-06-04 20:45:02,515 | INFO     | -- intersect: -23128845988.478455
[2025-06-05 00:39:35] 2025-06-04 20:45:02,515 | INFO     | intersect: -23128845988.478455
[2025-06-05 00:39:35] 2025-06-04 20:45:02,515 | INFO     | chi2: 1.5803670256750313
[2025-06-05 00:39:35] 2025-06-04 20:45:02,516 | INFO     | current chi2=1.5803670256750313 (change=-0.047576261316173915 %)
[2025-06-05 00:39:35] 2025-06-04 20:45:02,516 | INFO     | right removable region: 205
[2025-06-05 00:39:35] 2025-06-04 20:45:02,516 | INFO     | sum of square deviations: 2912836010.0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,518 | INFO     | sum of deviations: -12644311861.0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,518 | INFO     | mean x: 1749063335.0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,518 | INFO     | mean y: 2474724.7725118482
[2025-06-05 00:39:35] 2025-06-04 20:45:02,518 | INFO     | -- intersect: 7594972962.385522
[2025-06-05 00:39:35] 2025-06-04 20:45:02,519 | INFO     | intersect: 7594972962.385522
[2025-06-05 00:39:35] 2025-06-04 20:45:02,519 | INFO     | chi2: 0.9026389236737165
[2025-06-05 00:39:35] 2025-06-04 20:45:02,519 | INFO     | current chi2=0.9026389236737165 (change=62.839831764580936 %)
[2025-06-05 00:39:35] 2025-06-04 20:45:02,520 | INFO     | sum of square deviations: 2710627567.5
[2025-06-05 00:39:35] 2025-06-04 20:45:02,521 | INFO     | sum of deviations: -7942225802.999999
[2025-06-05 00:39:35] 2025-06-04 20:45:02,521 | INFO     | mean x: 1749063487.5
[2025-06-05 00:39:35] 2025-06-04 20:45:02,522 | INFO     | mean y: 2471146.067961165
[2025-06-05 00:39:35] 2025-06-04 20:45:02,522 | INFO     | -- intersect: 5127283321.692552
[2025-06-05 00:39:35] 2025-06-04 20:45:02,522 | INFO     | intersect: 5127283321.692552
[2025-06-05 00:39:35] 2025-06-04 20:45:02,522 | INFO     | chi2: 0.8760353354656271
[2025-06-05 00:39:35] 2025-06-04 20:45:02,522 | INFO     | current chi2=0.8760353354656271 (change=2.9473123206135954 %)
[2025-06-05 00:39:35] 2025-06-04 20:45:02,523 | INFO     | left removable region: 20
[2025-06-05 00:39:35] 2025-06-04 20:45:02,523 | INFO     | sum of square deviations: 1963274020.0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,524 | INFO     | sum of deviations: 3327746481.0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,525 | INFO     | mean x: 1749063457.0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,525 | INFO     | mean y: 2484347.5081081083
[2025-06-05 00:39:35] 2025-06-04 20:45:02,525 | INFO     | -- intersect: -2962175554.6676693
[2025-06-05 00:39:35] 2025-06-04 20:45:02,525 | INFO     | intersect: -2962175554.6676693
[2025-06-05 00:39:35] 2025-06-04 20:45:02,525 | INFO     | chi2: 0.0006561989912994144
[2025-06-05 00:39:35] 2025-06-04 20:45:02,526 | INFO     | -- intersect: -2962175554.6676693
[2025-06-05 00:39:35] 2025-06-04 20:45:02,526 | INFO     | current memory leak: 1.69 B/s (using 185 data points, chi2=0.00)
[2025-06-05 00:39:35] 2025-06-04 20:45:02,527 | INFO     | ..............................
[2025-06-05 00:39:35] 2025-06-04 20:45:02,527 | INFO     | . Timing measurements:
[2025-06-05 00:39:35] 2025-06-04 20:45:02,527 | INFO     | . get job = 0 s
[2025-06-05 00:39:35] 2025-06-04 20:45:02,527 | INFO     | . initial setup = 3 s
[2025-06-05 00:39:35] 2025-06-04 20:45:02,527 | INFO     | . payload setup = 13 s
[2025-06-05 00:39:35] 2025-06-04 20:45:02,527 | INFO     | . stage-in = 0 s
[2025-06-05 00:39:35] 2025-06-04 20:45:02,527 | INFO     | . payload execution = 13192 s
[2025-06-05 00:39:35] 2025-06-04 20:45:02,527 | INFO     | . stage-out = 5 s
[2025-06-05 00:39:35] 2025-06-04 20:45:02,528 | INFO     | . log creation = 1 s
[2025-06-05 00:39:35] 2025-06-04 20:45:02,528 | INFO     | ..............................
[2025-06-05 00:39:35] 2025-06-04 20:45:02,947 | INFO     | 
[2025-06-05 00:39:35] 2025-06-04 20:45:02,947 | INFO     | job summary report
[2025-06-05 00:39:35] 2025-06-04 20:45:02,947 | INFO     | --------------------------------------------------
[2025-06-05 00:39:35] 2025-06-04 20:45:02,947 | INFO     | PanDA job id: 6678074247
[2025-06-05 00:39:35] 2025-06-04 20:45:02,947 | INFO     | task id: 45006595
[2025-06-05 00:39:35] 2025-06-04 20:45:02,947 | INFO     | errors: (none)
[2025-06-05 00:39:35] 2025-06-04 20:45:02,948 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 00:39:35] 2025-06-04 20:45:02,948 | INFO     | pilot state: finished 
[2025-06-05 00:39:35] 2025-06-04 20:45:02,948 | INFO     | transexitcode: 0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,948 | INFO     | exeerrorcode: 0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,948 | INFO     | exeerrordiag: 
[2025-06-05 00:39:35] 2025-06-04 20:45:02,948 | INFO     | exitcode: 0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,948 | INFO     | exitmsg: OK
[2025-06-05 00:39:35] 2025-06-04 20:45:02,948 | INFO     | cpuconsumptiontime: 49774 s
[2025-06-05 00:39:35] 2025-06-04 20:45:02,948 | INFO     | nevents: 400
[2025-06-05 00:39:35] 2025-06-04 20:45:02,948 | INFO     | neventsw: 0
[2025-06-05 00:39:35] 2025-06-04 20:45:02,948 | INFO     | pid: 19382
[2025-06-05 00:39:35] 2025-06-04 20:45:02,949 | INFO     | pgrp: 19382
[2025-06-05 00:39:35] 2025-06-04 20:45:02,949 | INFO     | corecount: 8
[2025-06-05 00:39:35] 2025-06-04 20:45:02,949 | INFO     | event service: False
[2025-06-05 00:39:35] 2025-06-04 20:45:02,949 | INFO     | sizes: {0: 2397171, 1: 2397370, 11: 2397576, 12: 2397604, 13210: 2427087, 13215: 2436028, 13218: 2436212, 13312: 2436382}
[2025-06-05 00:39:35] 2025-06-04 20:45:02,949 | INFO     | --------------------------------------------------
[2025-06-05 00:39:35] 2025-06-04 20:45:02,949 | INFO     | 
[2025-06-05 00:39:35] 2025-06-04 20:45:02,949 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 00:39:35] 2025-06-04 20:45:03,461 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,462 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,462 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,462 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,462 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,462 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,462 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,462 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,462 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,462 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,463 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,463 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,463 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,463 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,463 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,463 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,463 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,463 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 00:39:35] 2025-06-04 20:45:03,463 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,464 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 00:39:35] 2025-06-04 20:45:03,464 | INFO     | job 6678074247 has completed (purged errors)
[2025-06-05 00:39:35] 2025-06-04 20:45:03,464 | INFO     | overall cleanup function is called
[2025-06-05 00:39:35] 2025-06-04 20:45:04,474 | INFO     | --- collectZombieJob: --- 10, [19382]
[2025-06-05 00:39:35] 2025-06-04 20:45:04,474 | INFO     | zombie collector waiting for pid 19382
[2025-06-05 00:39:35] 2025-06-04 20:45:04,474 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 00:39:35] 2025-06-04 20:45:04,474 | INFO     | collected zombie processes
[2025-06-05 00:39:35] 2025-06-04 20:45:04,475 | INFO     | will attempt to kill all subprocesses of pid=19382
[2025-06-05 00:39:35] 2025-06-04 20:45:04,627 | INFO     | process IDs to be killed: [19382] (in reverse order)
[2025-06-05 00:39:35] 2025-06-04 20:45:05,300 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 00:39:35] 2025-06-04 20:45:05,301 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 00:39:35] 2025-06-04 20:45:05,304 | INFO     | did not find any defunct processes belonging to 19382
[2025-06-05 00:39:35] 2025-06-04 20:45:05,308 | INFO     | did not find any defunct processes belonging to 19382
[2025-06-05 00:39:35] 2025-06-04 20:45:05,308 | INFO     | ready for new job
[2025-06-05 00:39:35] 2025-06-04 20:45:05,308 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 00:39:35] 2025-06-04 20:45:05,310 | INFO     | **************************************
[2025-06-05 00:39:35] 2025-06-04 20:45:05,311 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 00:39:35] 2025-06-04 20:45:05,311 | INFO     | **************************************
[2025-06-05 00:39:35] 2025-06-04 20:45:05,311 | INFO     | 
[2025-06-05 00:39:35] 2025-06-04 20:45:05,312 | INFO     | pilot is running in a VM
[2025-06-05 00:39:35] 2025-06-04 20:45:05,312 | INFO     | architecture information:
[2025-06-05 00:39:35] 2025-06-04 20:45:05,313 | INFO     | executing command: cat /etc/os-release
[2025-06-05 00:39:35] 2025-06-04 20:45:05,488 | INFO     | cat /etc/os-release:
[2025-06-05 00:39:35] NAME="CentOS Linux"
[2025-06-05 00:39:35] VERSION="7 (Core)"
[2025-06-05 00:39:35] ID="centos"
[2025-06-05 00:39:35] ID_LIKE="rhel fedora"
[2025-06-05 00:39:35] VERSION_ID="7"
[2025-06-05 00:39:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 00:39:35] ANSI_COLOR="0;31"
[2025-06-05 00:39:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 00:39:35] HOME_URL="https://www.centos.org/"
[2025-06-05 00:39:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 00:39:35] 
[2025-06-05 00:39:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 00:39:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 00:39:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 00:39:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 00:39:35] 
[2025-06-05 00:39:35] 2025-06-04 20:45:05,489 | INFO     | **************************************
[2025-06-05 00:39:35] 2025-06-04 20:45:05,993 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 00:39:35] 2025-06-04 20:45:06,192 | INFO     | sufficient remaining disk space (496998809600 B)
[2025-06-05 00:39:35] 2025-06-04 20:45:06,192 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 00:39:35] 2025-06-04 20:45:06,192 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 00:39:35] 2025-06-04 20:45:06,192 | INFO     | update_server=False
[2025-06-05 00:39:35] 2025-06-04 20:45:06,193 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 00:39:35] 2025-06-04 20:45:06,194 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 00:39:35] 2025-06-04 20:45:06,195 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:39:35] 2025-06-04 20:45:06,195 | INFO     | aborting loop
[2025-06-05 00:39:35] 2025-06-04 20:45:06,242 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 00:39:35] 2025-06-04 20:45:06,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 00:39:35] 2025-06-04 20:45:06,242 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 00:39:35] 2025-06-04 20:45:06,711 | INFO     | all data control threads have been joined
[2025-06-05 00:39:35] 2025-06-04 20:45:06,960 | INFO     | all payload control threads have been joined
[2025-06-05 00:39:35] 2025-06-04 20:45:07,199 | INFO     | [job] retrieve thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:07,201 | INFO     | [job] job monitor thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:07,502 | INFO     | [job] validate thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:07,508 | INFO     | all job control threads have been joined
[2025-06-05 00:39:35] 2025-06-04 20:45:07,678 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 00:39:35] 2025-06-04 20:45:07,679 | INFO     | [payload] failed_post thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:07,716 | INFO     | [data] control thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:07,786 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:07,829 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:07,966 | INFO     | [payload] control thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:08,181 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:08,201 | INFO     | [data] copytool_out thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:08,291 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:08,385 | INFO     | [data] copytool_in thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:08,514 | INFO     | [job] control thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:08,666 | INFO     | [payload] validate_post thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:08,684 | INFO     | [job] queue monitor thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:09,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 00:39:35] 2025-06-04 20:45:13,358 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 00:39:35] 2025-06-04 20:45:13,894 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139647306762048)>', '<ExcThread(monitor, started 139646860240640)>']
[2025-06-05 00:39:35] 2025-06-04 20:45:14,289 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 00:39:35] 2025-06-04 20:45:14,289 | INFO     | [monitor] control thread has ended
[2025-06-05 00:39:35] 2025-06-04 20:45:18,920 | INFO     | all workflow threads have been joined
[2025-06-05 00:39:35] 2025-06-04 20:45:18,920 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 00:39:35] 2025-06-04 20:45:18,920 | INFO     | traces error code: 0
[2025-06-05 00:39:35] 2025-06-04 20:45:18,921 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 00:39:35] 2025-06-04 20:45:19,257 [wrapper] ==== pilot stdout END ====
[2025-06-05 00:39:35] 2025-06-04 20:45:19,369 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 00:39:35] 2025-06-04 20:45:19,493 [wrapper] pilotpid: 10356
[2025-06-05 00:39:35] 2025-06-04 20:45:19,592 [wrapper] Pilot exit status: 0
[2025-06-05 00:39:35] 2025-06-04 20:45:20,057 [wrapper] pandaids: 6678074247
[2025-06-05 00:39:35] 2025-06-04 20:45:20,904 [wrapper] cleanup supervisor_pilot 22646 10357
[2025-06-05 00:39:35] 2025-06-04 20:45:21,005 [wrapper] Test setup, not cleaning
[2025-06-05 00:39:35] 2025-06-04 20:45:21,097 [wrapper] apfmon messages muted
[2025-06-05 00:39:35] 2025-06-04 20:45:21,159 [wrapper] ==== wrapper stdout END ====
[2025-06-05 00:39:35] 2025-06-04 20:45:21,261 [wrapper] ==== wrapper stderr END ====
[2025-06-05 00:39:35]  *** Error codes and diagnostics ***
[2025-06-05 00:39:35]     "exeErrorCode": 0,
[2025-06-05 00:39:35]     "exeErrorDiag": "",
[2025-06-05 00:39:35]     "pilotErrorCode": 0,
[2025-06-05 00:39:35]     "pilotErrorDiag": "",
[2025-06-05 00:39:35]  *** Listing of results directory ***
[2025-06-05 00:39:35] total 387700
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc    495897 Jun  3 22:49 pilot3.tar.gz
[2025-06-05 00:39:35] -rwx------. 1 boinc boinc     37140 Jun  3 23:02 runpilot2-wrapper.sh
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc      5111 Jun  3 23:02 queuedata.json
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc       100 Jun  4 19:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 00:39:35] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 19:02 run_atlas
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc       105 Jun  4 19:02 job.xml
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc      6391 Jun  4 19:02 init_data.xml
[2025-06-05 00:39:35] -rw-r--r--. 2 boinc boinc 214121740 Jun  4 19:02 EVNT.45006593._001835.pool.root.1
[2025-06-05 00:39:35] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:02 start_atlas.sh
[2025-06-05 00:39:35] drwxrwx--x. 2 boinc boinc        68 Jun  4 19:02 shared
[2025-06-05 00:39:35] -rw-r--r--. 2 boinc boinc    508885 Jun  4 19:02 input.tar.gz
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc         0 Jun  4 19:02 boinc_lockfile
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc      2525 Jun  4 19:02 pandaJob.out
[2025-06-05 00:39:35] -rw-------. 1 boinc boinc    990984 Jun  4 19:02 agis_schedconf.cvmfs.json
[2025-06-05 00:39:35] drwx------. 4 boinc boinc      4096 Jun  4 19:02 pilot3
[2025-06-05 00:39:35] -rw-------. 1 boinc boinc 175951472 Jun  4 22:42 HITS.45006595._045760.pool.root.1
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc       531 Jun  4 22:42 boinc_task_state.xml
[2025-06-05 00:39:35] -rw-------. 1 boinc boinc      1029 Jun  4 22:43 memory_monitor_summary.json
[2025-06-05 00:39:35] -rw-------. 1 boinc boinc   1598969 Jun  4 22:43 agis_ddmendpoints.agis.ALL.json
[2025-06-05 00:39:35] -rw-------. 1 boinc boinc    396006 Jun  4 22:43 log.45006595._045760.job.log.tgz.1
[2025-06-05 00:39:35] -rw-------. 1 boinc boinc      7685 Jun  4 22:45 heartbeat.json
[2025-06-05 00:39:35] -rw-------. 1 boinc boinc        95 Jun  4 22:45 pilot_heartbeat.json
[2025-06-05 00:39:35] -rw-------. 1 boinc boinc      4416 Jun  4 22:45 pilotlog.txt
[2025-06-05 00:39:35] -rw-------. 1 boinc boinc   1163090 Jun  4 22:45 log.45006595._045760.job.log.1
[2025-06-05 00:39:35] -rw-------. 1 boinc boinc       357 Jun  4 22:45 output.list
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc       620 Jun  4 22:45 runtime_log
[2025-06-05 00:39:35] -rw-------. 1 boinc boinc   1576960 Jun  4 22:45 result.tar.gz
[2025-06-05 00:39:35] -rw-------. 1 boinc boinc       657 Jun  4 22:45 W9yKDm5wng7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8BmKDmv3kOZm.diag
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc      8659 Jun  4 22:45 runtime_log.err
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc      8192 Jun  5 00:39 boinc_mmap_file
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc        28 Jun  5 00:39 wrapper_checkpoint.txt
[2025-06-05 00:39:35] -rw-r--r--. 1 boinc boinc     20494 Jun  5 00:39 stderr.txt
[2025-06-05 00:39:35] HITS file was successfully produced:
[2025-06-05 00:39:36] -rw-------. 1 boinc boinc 175951472 Jun  4 22:42 shared/HITS.pool.root.1
[2025-06-05 00:39:36]  *** Contents of shared directory: ***
[2025-06-05 00:39:36] total 382988
[2025-06-05 00:39:36] -rw-r--r--. 2 boinc boinc 214121740 Jun  4 19:02 ATLAS.root_0
[2025-06-05 00:39:36] -rw-r--r--. 2 boinc boinc     15093 Jun  4 19:02 start_atlas.sh
[2025-06-05 00:39:36] -rw-r--r--. 2 boinc boinc    508885 Jun  4 19:02 input.tar.gz
[2025-06-05 00:39:36] -rw-------. 1 boinc boinc 175951472 Jun  4 22:42 HITS.pool.root.1
[2025-06-05 00:39:36] -rw-------. 1 boinc boinc   1576960 Jun  4 22:45 result.tar.gz
00:39:37 (4917): run_atlas exited; CPU time 49958.117932
00:39:37 (4917): called boinc_finish(0)

</stderr_txt>
]]>

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