Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
03:18:05 (2762555): wrapper (7.7.26015): starting
03:18:05 (2762555): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 03:18:05] Arguments: --nthreads 12
[2025-06-04 03:18:05] Threads: 12
[2025-06-04 03:18:05] Checking for CVMFS
[2025-06-04 03:18:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 03:18:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 03:18:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 03:18:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 03:18:06] 2.12.7.0 29207 1358 73772 146767 1 186 3607435 4096001 12891 130560 17 17747340 99.999 388855 156 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-04 03:18:06] CVMFS is ok
[2025-06-04 03:18:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 03:18:06] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-04 03:18:06] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-04 03:18:06] Further information can be found at the LHC@home message board.
[2025-06-04 03:18:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 03:18:06] Checking for apptainer binary...
[2025-06-04 03:18:06] apptainer is not installed, using version from CVMFS
[2025-06-04 03:18:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 03:18:06] epyc7v12
[2025-06-04 03:18:06] apptainer works
[2025-06-04 03:18:06] Set ATHENA_PROC_NUMBER=12
[2025-06-04 03:18:06] Set ATHENA_CORE_NUMBER=12
[2025-06-04 03:18:07] Starting ATLAS job with PandaID=6678072371
[2025-06-04 03:18:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 05:05:04]  *** The last 200 lines of the pilot log: ***
[2025-06-04 05:05:04] 2025-06-04 05:04:47,830 | INFO     | mean y: 2586802.326923077
[2025-06-04 05:05:04] 2025-06-04 05:04:47,830 | INFO     | -- intersect: -109803088809.08415
[2025-06-04 05:05:04] 2025-06-04 05:04:47,830 | INFO     | intersect: -109803088809.08415
[2025-06-04 05:05:04] 2025-06-04 05:04:47,830 | INFO     | chi2: 1.6357424264374998
[2025-06-04 05:05:04] 2025-06-04 05:04:47,831 | INFO     | sum of square deviations: 300842850.0
[2025-06-04 05:05:04] 2025-06-04 05:04:47,831 | INFO     | sum of deviations: 20778898236.0
[2025-06-04 05:05:04] 2025-06-04 05:04:47,831 | INFO     | mean x: 1749010123.0
[2025-06-04 05:05:04] 2025-06-04 05:04:47,831 | INFO     | mean y: 2583244.121212121
[2025-06-04 05:05:04] 2025-06-04 05:04:47,831 | INFO     | -- intersect: -120799700604.57536
[2025-06-04 05:05:04] 2025-06-04 05:04:47,832 | INFO     | intersect: -120799700604.57536
[2025-06-04 05:05:04] 2025-06-04 05:04:47,832 | INFO     | chi2: 1.6358539400738457
[2025-06-04 05:05:04] 2025-06-04 05:04:47,832 | INFO     | current chi2=1.6358539400738457 (change=-0.0068173102649626265 %)
[2025-06-04 05:05:04] 2025-06-04 05:04:47,832 | INFO     | right removable region: 98
[2025-06-04 05:05:04] 2025-06-04 05:04:47,832 | INFO     | sum of square deviations: 300842850.0
[2025-06-04 05:05:04] 2025-06-04 05:04:47,833 | INFO     | sum of deviations: 2919137858.9999995
[2025-06-04 05:05:04] 2025-06-04 05:04:47,833 | INFO     | mean x: 1749010428.0
[2025-06-04 05:05:04] 2025-06-04 05:04:47,833 | INFO     | mean y: 2646196.585858586
[2025-06-04 05:05:04] 2025-06-04 05:04:47,833 | INFO     | -- intersect: -16968348979.66843
[2025-06-04 05:05:04] 2025-06-04 05:04:47,833 | INFO     | intersect: -16968348979.66843
[2025-06-04 05:05:04] 2025-06-04 05:04:47,833 | INFO     | chi2: 0.03828756427065577
[2025-06-04 05:05:04] 2025-06-04 05:04:47,834 | INFO     | current chi2=0.03828756427065577 (change=97.65931581575208 %)
[2025-06-04 05:05:04] 2025-06-04 05:04:47,834 | INFO     | sum of square deviations: 257521107.5
[2025-06-04 05:05:04] 2025-06-04 05:04:47,834 | INFO     | sum of deviations: 589024265.4999999
[2025-06-04 05:05:04] 2025-06-04 05:04:47,834 | INFO     | mean x: 1749010580.5
[2025-06-04 05:05:04] 2025-06-04 05:04:47,835 | INFO     | mean y: 2654193.5425531915
[2025-06-04 05:05:04] 2025-06-04 05:04:47,835 | INFO     | -- intersect: -3997832145.351981
[2025-06-04 05:05:04] 2025-06-04 05:04:47,835 | INFO     | intersect: -3997832145.351981
[2025-06-04 05:05:04] 2025-06-04 05:04:47,835 | INFO     | chi2: 0.0014389695978625156
[2025-06-04 05:05:04] 2025-06-04 05:04:47,835 | INFO     | current chi2=0.0014389695978625156 (change=96.2416789229777 %)
[2025-06-04 05:05:04] 2025-06-04 05:04:47,835 | INFO     | sum of square deviations: 218571540.0
[2025-06-04 05:05:04] 2025-06-04 05:04:47,836 | INFO     | sum of deviations: 195363235.99999997
[2025-06-04 05:05:04] 2025-06-04 05:04:47,836 | INFO     | mean x: 1749010733.0
[2025-06-04 05:05:04] 2025-06-04 05:04:47,836 | INFO     | mean y: 2655731.5056179776
[2025-06-04 05:05:04] 2025-06-04 05:04:47,836 | INFO     | -- intersect: -1560642018.0440807
[2025-06-04 05:05:04] 2025-06-04 05:04:47,836 | INFO     | intersect: -1560642018.0440807
[2025-06-04 05:05:04] 2025-06-04 05:04:47,836 | INFO     | chi2: 0.001034777919003801
[2025-06-04 05:05:04] 2025-06-04 05:04:47,836 | INFO     | current chi2=0.001034777919003801 (change=28.088965844664955 %)
[2025-06-04 05:05:04] 2025-06-04 05:04:47,837 | INFO     | sum of square deviations: 183761585.0
[2025-06-04 05:05:04] 2025-06-04 05:04:47,837 | INFO     | sum of deviations: -58277112.499999985
[2025-06-04 05:05:04] 2025-06-04 05:04:47,839 | INFO     | mean x: 1749010885.5
[2025-06-04 05:05:04] 2025-06-04 05:04:47,839 | INFO     | mean y: 2656843.011904762
[2025-06-04 05:05:04] 2025-06-04 05:04:47,839 | INFO     | -- intersect: 557328289.3754529
[2025-06-04 05:05:04] 2025-06-04 05:04:47,839 | INFO     | intersect: 557328289.3754529
[2025-06-04 05:05:04] 2025-06-04 05:04:47,839 | INFO     | chi2: 0.0007934201006993925
[2025-06-04 05:05:04] 2025-06-04 05:04:47,840 | INFO     | current chi2=0.0007934201006993925 (change=23.32460075460133 %)
[2025-06-04 05:05:04] 2025-06-04 05:04:47,840 | INFO     | left removable region: 40
[2025-06-04 05:05:04] 2025-06-04 05:04:47,840 | INFO     | sum of square deviations: 60482994.5
[2025-06-04 05:05:04] 2025-06-04 05:04:47,840 | INFO     | sum of deviations: -339067127.5
[2025-06-04 05:05:04] 2025-06-04 05:04:47,840 | INFO     | mean x: 1749011312.5
[2025-06-04 05:05:04] 2025-06-04 05:04:47,840 | INFO     | mean y: 2658649.706896552
[2025-06-04 05:05:04] 2025-06-04 05:04:47,841 | INFO     | -- intersect: 9807600461.812113
[2025-06-04 05:05:04] 2025-06-04 05:04:47,841 | INFO     | intersect: 9807600461.812113
[2025-06-04 05:05:04] 2025-06-04 05:04:47,841 | INFO     | chi2: 0.0003740792415180391
[2025-06-04 05:05:04] 2025-06-04 05:04:47,841 | INFO     | -- intersect: 9807600461.812113
[2025-06-04 05:05:04] 2025-06-04 05:04:47,841 | INFO     | current memory leak: -5.61 B/s (using 58 data points, chi2=0.00)
[2025-06-04 05:05:04] 2025-06-04 05:04:47,842 | INFO     | ..............................
[2025-06-04 05:05:04] 2025-06-04 05:04:47,842 | INFO     | . Timing measurements:
[2025-06-04 05:05:04] 2025-06-04 05:04:47,842 | INFO     | . get job = 0 s
[2025-06-04 05:05:04] 2025-06-04 05:04:47,842 | INFO     | . initial setup = 8 s
[2025-06-04 05:05:04] 2025-06-04 05:04:47,842 | INFO     | . payload setup = 7 s
[2025-06-04 05:05:04] 2025-06-04 05:04:47,842 | INFO     | . stage-in = 0 s
[2025-06-04 05:05:04] 2025-06-04 05:04:47,842 | INFO     | . payload execution = 6338 s
[2025-06-04 05:05:04] 2025-06-04 05:04:47,842 | INFO     | . stage-out = 1 s
[2025-06-04 05:05:04] 2025-06-04 05:04:47,842 | INFO     | . log creation = 0 s
[2025-06-04 05:05:04] 2025-06-04 05:04:47,843 | INFO     | ..............................
[2025-06-04 05:05:04] 2025-06-04 05:04:47,957 | INFO     | 
[2025-06-04 05:05:04] 2025-06-04 05:04:47,957 | INFO     | job summary report
[2025-06-04 05:05:04] 2025-06-04 05:04:47,957 | INFO     | --------------------------------------------------
[2025-06-04 05:05:04] 2025-06-04 05:04:47,957 | INFO     | PanDA job id: 6678072371
[2025-06-04 05:05:04] 2025-06-04 05:04:47,958 | INFO     | task id: 45006595
[2025-06-04 05:05:04] 2025-06-04 05:04:47,958 | INFO     | errors: (none)
[2025-06-04 05:05:04] 2025-06-04 05:04:47,958 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 05:05:04] 2025-06-04 05:04:47,958 | INFO     | pilot state: finished 
[2025-06-04 05:05:04] 2025-06-04 05:04:47,958 | INFO     | transexitcode: 0
[2025-06-04 05:05:04] 2025-06-04 05:04:47,958 | INFO     | exeerrorcode: 0
[2025-06-04 05:05:04] 2025-06-04 05:04:47,958 | INFO     | exeerrordiag: 
[2025-06-04 05:05:04] 2025-06-04 05:04:47,958 | INFO     | exitcode: 0
[2025-06-04 05:05:04] 2025-06-04 05:04:47,958 | INFO     | exitmsg: OK
[2025-06-04 05:05:04] 2025-06-04 05:04:47,958 | INFO     | cpuconsumptiontime: 40306 s
[2025-06-04 05:05:04] 2025-06-04 05:04:47,959 | INFO     | nevents: 400
[2025-06-04 05:05:04] 2025-06-04 05:04:47,959 | INFO     | neventsw: 0
[2025-06-04 05:05:04] 2025-06-04 05:04:47,959 | INFO     | pid: 2801488
[2025-06-04 05:05:04] 2025-06-04 05:04:47,959 | INFO     | pgrp: 2801488
[2025-06-04 05:05:04] 2025-06-04 05:04:47,959 | INFO     | corecount: 12
[2025-06-04 05:05:04] 2025-06-04 05:04:47,959 | INFO     | event service: False
[2025-06-04 05:05:04] 2025-06-04 05:04:47,959 | INFO     | sizes: {0: 2405036, 1: 2405235, 6: 2405441, 11: 2405469, 6349: 2432517, 6350: 2432516, 6353: 2441687, 6354: 2441743, 6367: 2441913}
[2025-06-04 05:05:04] 2025-06-04 05:04:47,959 | INFO     | --------------------------------------------------
[2025-06-04 05:05:04] 2025-06-04 05:04:47,959 | INFO     | 
[2025-06-04 05:05:04] 2025-06-04 05:04:47,959 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/8
[2025-06-04 05:05:04] 2025-06-04 05:04:48,003 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,003 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,004 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,004 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,004 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,004 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,004 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,004 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,005 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,005 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,005 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,005 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,005 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,005 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,005 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 05:05:04] 2025-06-04 05:04:48,005 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,005 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 05:05:04] 2025-06-04 05:04:48,006 | INFO     | job 6678072371 has completed (purged errors)
[2025-06-04 05:05:04] 2025-06-04 05:04:48,006 | INFO     | overall cleanup function is called
[2025-06-04 05:05:04] 2025-06-04 05:04:49,014 | INFO     | --- collectZombieJob: --- 10, [2801488]
[2025-06-04 05:05:04] 2025-06-04 05:04:49,014 | INFO     | zombie collector waiting for pid 2801488
[2025-06-04 05:05:04] 2025-06-04 05:04:49,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 05:05:04] 2025-06-04 05:04:49,014 | INFO     | collected zombie processes
[2025-06-04 05:05:04] 2025-06-04 05:04:49,014 | INFO     | will attempt to kill all subprocesses of pid=2801488
[2025-06-04 05:05:04] 2025-06-04 05:04:50,045 | INFO     | PID=2774081 has CPU usage=15.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 05:05:04] 2025-06-04 05:04:50,046 | INFO     | .. there are 19 such processes running
[2025-06-04 05:05:04] 2025-06-04 05:04:50,098 | INFO     | process IDs to be killed: [2801488] (in reverse order)
[2025-06-04 05:05:04] 2025-06-04 05:04:50,321 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 05:05:04] 2025-06-04 05:04:50,321 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 05:05:04] 2025-06-04 05:04:50,343 | INFO     | did not find any defunct processes belonging to 2801488
[2025-06-04 05:05:04] 2025-06-04 05:04:50,363 | INFO     | did not find any defunct processes belonging to 2801488
[2025-06-04 05:05:04] 2025-06-04 05:04:50,363 | INFO     | ready for new job
[2025-06-04 05:05:04] 2025-06-04 05:04:50,363 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 05:05:04] 2025-06-04 05:04:50,365 | INFO     | **************************************
[2025-06-04 05:05:04] 2025-06-04 05:04:50,365 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 05:05:04] 2025-06-04 05:04:50,365 | INFO     | **************************************
[2025-06-04 05:05:04] 2025-06-04 05:04:50,366 | INFO     | 
[2025-06-04 05:05:04] 2025-06-04 05:04:50,376 | INFO     | architecture information:
[2025-06-04 05:05:04] 2025-06-04 05:04:50,376 | INFO     | executing command: cat /etc/os-release
[2025-06-04 05:05:04] 2025-06-04 05:04:50,396 | INFO     | cat /etc/os-release:
[2025-06-04 05:05:04] NAME="CentOS Linux"
[2025-06-04 05:05:04] VERSION="7 (Core)"
[2025-06-04 05:05:04] ID="centos"
[2025-06-04 05:05:04] ID_LIKE="rhel fedora"
[2025-06-04 05:05:04] VERSION_ID="7"
[2025-06-04 05:05:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 05:05:04] ANSI_COLOR="0;31"
[2025-06-04 05:05:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 05:05:04] HOME_URL="https://www.centos.org/"
[2025-06-04 05:05:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 05:05:04] 
[2025-06-04 05:05:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 05:05:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 05:05:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 05:05:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 05:05:04] 
[2025-06-04 05:05:04] 2025-06-04 05:04:50,396 | INFO     | **************************************
[2025-06-04 05:05:04] 2025-06-04 05:04:50,899 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/8
[2025-06-04 05:05:04] 2025-06-04 05:04:50,921 | INFO     | sufficient remaining disk space (312119132160 B)
[2025-06-04 05:05:04] 2025-06-04 05:04:50,922 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 05:05:04] 2025-06-04 05:04:50,922 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 05:05:04] 2025-06-04 05:04:50,922 | INFO     | update_server=False
[2025-06-04 05:05:04] 2025-06-04 05:04:50,922 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 05:05:04] 2025-06-04 05:04:50,923 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 05:05:04] 2025-06-04 05:04:50,923 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 05:05:04] 2025-06-04 05:04:50,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 05:05:04] 2025-06-04 05:04:50,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 05:05:04] 2025-06-04 05:04:50,923 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:05:04] 2025-06-04 05:04:50,923 | INFO     | aborting loop
[2025-06-04 05:05:04] 2025-06-04 05:04:51,709 | INFO     | all data control threads have been joined
[2025-06-04 05:05:04] 2025-06-04 05:04:51,733 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 05:05:04] 2025-06-04 05:04:51,789 | INFO     | all payload control threads have been joined
[2025-06-04 05:05:04] 2025-06-04 05:04:51,927 | INFO     | [job] job monitor thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:51,928 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:51,929 | INFO     | [job] retrieve thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:52,074 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:52,136 | INFO     | all job control threads have been joined
[2025-06-04 05:05:04] 2025-06-04 05:04:52,302 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:52,334 | INFO     | [payload] failed_post thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:52,390 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:52,673 | INFO     | [payload] validate_post thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:52,713 | INFO     | [data] control thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:52,797 | INFO     | [payload] control thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:52,972 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 05:05:04] 2025-06-04 05:04:53,137 | INFO     | [job] control thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:53,213 | INFO     | [data] copytool_in thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:53,394 | INFO     | [job] validate thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:53,741 | INFO     | [data] copytool_out thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:53,977 | INFO     | [job] queue monitor thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:54,369 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 05:05:04] 2025-06-04 05:04:58,373 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 05:05:04] 2025-06-04 05:04:59,414 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139945501112128)>', '<ExcThread(monitor, started 139944932669184)>']
[2025-06-04 05:05:04] 2025-06-04 05:04:59,965 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 05:05:04] 2025-06-04 05:04:59,966 | INFO     | [monitor] control thread has ended
[2025-06-04 05:05:04] 2025-06-04 05:05:04,437 | INFO     | all workflow threads have been joined
[2025-06-04 05:05:04] 2025-06-04 05:05:04,438 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 05:05:04] 2025-06-04 05:05:04,438 | INFO     | traces error code: 0
[2025-06-04 05:05:04] 2025-06-04 05:05:04,438 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 05:05:04] 2025-06-04 05:05:04,669 [wrapper] ==== pilot stdout END ====
[2025-06-04 05:05:04] 2025-06-04 05:05:04,673 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 05:05:04] 2025-06-04 05:05:04,677 [wrapper] pilotpid: 2774081
[2025-06-04 05:05:04] 2025-06-04 05:05:04,681 [wrapper] Pilot exit status: 0
[2025-06-04 05:05:04] 2025-06-04 05:05:04,701 [wrapper] pandaids: 6678072371
[2025-06-04 05:05:04] 2025-06-04 05:05:04,831 [wrapper] cleanup supervisor_pilot 3192303 2774082
[2025-06-04 05:05:04] 2025-06-04 05:05:04,835 [wrapper] Test setup, not cleaning
[2025-06-04 05:05:04] 2025-06-04 05:05:04,841 [wrapper] apfmon messages muted
[2025-06-04 05:05:04] 2025-06-04 05:05:04,846 [wrapper] ==== wrapper stdout END ====
[2025-06-04 05:05:04] 2025-06-04 05:05:04,850 [wrapper] ==== wrapper stderr END ====
[2025-06-04 05:05:04]  *** Error codes and diagnostics ***
[2025-06-04 05:05:04]     "exeErrorCode": 0,
[2025-06-04 05:05:04]     "exeErrorDiag": "",
[2025-06-04 05:05:04]     "pilotErrorCode": 0,
[2025-06-04 05:05:04]     "pilotErrorDiag": "",
[2025-06-04 05:05:04]  *** Listing of results directory ***
[2025-06-04 05:05:04] total 389924
[2025-06-04 05:05:04] -rw-r--r-- 1 boinc boinc    495897 Jun  3 20:49 pilot3.tar.gz
[2025-06-04 05:05:04] -rw-r--r-- 1 boinc boinc      5111 Jun  3 21:03 queuedata.json
[2025-06-04 05:05:04] -rwx------ 1 boinc boinc     37140 Jun  3 21:04 runpilot2-wrapper.sh
[2025-06-04 05:05:04] -rw-rw-r-- 1 boinc boinc       100 Jun  4 03:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 05:05:04] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 03:18 run_atlas
[2025-06-04 05:05:04] -rw-rw-r-- 1 boinc boinc       105 Jun  4 03:18 job.xml
[2025-06-04 05:05:04] -rw-rw-r-- 1 boinc boinc      6950 Jun  4 03:18 init_data.xml
[2025-06-04 05:05:04] -rw-r--r-- 2 boinc boinc 216133365 Jun  4 03:18 EVNT.45006593._001833.pool.root.1
[2025-06-04 05:05:04] -rw-r--r-- 2 boinc boinc     15093 Jun  4 03:18 start_atlas.sh
[2025-06-04 05:05:04] drwxrwx--x 2 boinc boinc      4096 Jun  4 03:18 shared
[2025-06-04 05:05:04] -rw-r--r-- 2 boinc boinc    508887 Jun  4 03:18 input.tar.gz
[2025-06-04 05:05:04] -rw-rw-r-- 1 boinc boinc         0 Jun  4 03:18 boinc_lockfile
[2025-06-04 05:05:04] -rw-rw-r-- 1 boinc boinc      2525 Jun  4 03:18 pandaJob.out
[2025-06-04 05:05:04] -rw------- 1 boinc boinc    986077 Jun  4 03:18 agis_schedconf.cvmfs.json
[2025-06-04 05:05:04] -rw------- 1 boinc boinc   1603667 Jun  4 03:18 agis_ddmendpoints.agis.ALL.json
[2025-06-04 05:05:04] drwx------ 4 boinc boinc      4096 Jun  4 03:18 pilot3
[2025-06-04 05:05:04] -rw------- 1 boinc boinc 177405370 Jun  4 05:03 HITS.45006595._045690.pool.root.1
[2025-06-04 05:05:04] -rw-rw-r-- 1 boinc boinc       530 Jun  4 05:03 boinc_task_state.xml
[2025-06-04 05:05:04] -rw------- 1 boinc boinc      1023 Jun  4 05:04 memory_monitor_summary.json
[2025-06-04 05:05:04] -rw------- 1 boinc boinc        95 Jun  4 05:04 pilot_heartbeat.json
[2025-06-04 05:05:04] -rw------- 1 boinc boinc    369871 Jun  4 05:04 log.45006595._045690.job.log.tgz.1
[2025-06-04 05:05:04] -rw-rw-r-- 1 boinc boinc      8192 Jun  4 05:04 boinc_mmap_file
[2025-06-04 05:05:04] -rw-rw-r-- 1 boinc boinc        27 Jun  4 05:04 wrapper_checkpoint.txt
[2025-06-04 05:05:04] -rw------- 1 boinc boinc      7645 Jun  4 05:04 heartbeat.json
[2025-06-04 05:05:04] -rw------- 1 boinc boinc      4500 Jun  4 05:05 pilotlog.txt
[2025-06-04 05:05:04] -rw------- 1 boinc boinc    585690 Jun  4 05:05 log.45006595._045690.job.log.1
[2025-06-04 05:05:04] -rw------- 1 boinc boinc       357 Jun  4 05:05 output.list
[2025-06-04 05:05:04] -rw-rw-r-- 1 boinc boinc       620 Jun  4 05:05 runtime_log
[2025-06-04 05:05:04] -rw------- 1 boinc boinc    972800 Jun  4 05:05 result.tar.gz
[2025-06-04 05:05:04] -rw-rw-r-- 1 boinc boinc      8963 Jun  4 05:05 runtime_log.err
[2025-06-04 05:05:04] -rw------- 1 boinc boinc       651 Jun  4 05:05 FQkMDm2yng7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuCmKDmvMgGxn.diag
[2025-06-04 05:05:04] -rw-rw-r-- 1 boinc boinc     21086 Jun  4 05:05 stderr.txt
[2025-06-04 05:05:04] HITS file was successfully produced:
[2025-06-04 05:05:04] -rw------- 1 boinc boinc 177405370 Jun  4 05:03 shared/HITS.pool.root.1
[2025-06-04 05:05:05]  *** Contents of shared directory: ***
[2025-06-04 05:05:05] total 385792
[2025-06-04 05:05:05] -rw-r--r-- 2 boinc boinc 216133365 Jun  4 03:18 ATLAS.root_0
[2025-06-04 05:05:05] -rw-r--r-- 2 boinc boinc     15093 Jun  4 03:18 start_atlas.sh
[2025-06-04 05:05:05] -rw-r--r-- 2 boinc boinc    508887 Jun  4 03:18 input.tar.gz
[2025-06-04 05:05:05] -rw------- 1 boinc boinc 177405370 Jun  4 05:03 HITS.pool.root.1
[2025-06-04 05:05:05] -rw------- 1 boinc boinc    972800 Jun  4 05:05 result.tar.gz
05:05:06 (2762555): run_atlas exited; CPU time 40633.722969
05:05:06 (2762555): called boinc_finish(0)

</stderr_txt>
]]>

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