Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
13:40:57 (1705596): wrapper (7.7.26015): starting
13:40:57 (1705596): wrapper: running run_atlas (--nthreads 3)
[2025-06-04 13:40:57] Arguments: --nthreads 3
[2025-06-04 13:40:57] Threads: 3
[2025-06-04 13:40:57] Checking for CVMFS
[2025-06-04 13:40:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:40:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:40:57] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:40:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:40:57] 2.9.2.0 1262746 1329 77640 146778 0 56 16148565 36864001 0 130560 0 1200686 99.993 307089 37800 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 13:40:57] CVMFS is ok
[2025-06-04 13:40:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 13:40:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 13:40:57] Further information can be found at the LHC@home message board.
[2025-06-04 13:40:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:40:57] Checking for apptainer binary...
[2025-06-04 13:40:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:40:57] Running /usr/bin/apptainer --version
[2025-06-04 13:40:57] apptainer version 1.3.6-6.1
[2025-06-04 13:40:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:40:57] cosA127b
[2025-06-04 13:40:57] apptainer works
[2025-06-04 13:40:57] Set ATHENA_PROC_NUMBER=3
[2025-06-04 13:40:57] Set ATHENA_CORE_NUMBER=3
[2025-06-04 13:40:57] Starting ATLAS job with PandaID=6678072315
[2025-06-04 13:40:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 14:53:48]  *** The last 200 lines of the pilot log: ***
[2025-06-04 14:53:48]  filetype=log
[2025-06-04 14:53:48]  guid=ebeda26a-60cd-4ec5-85a6-107672f3f96c
[2025-06-04 14:53:48]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 14:53:48]  is_altstaged=None
[2025-06-04 14:53:48]  is_tar=False
[2025-06-04 14:53:48]  lfn=log.45006595._045634.job.log.tgz.1
[2025-06-04 14:53:48]  mtime=0
[2025-06-04 14:53:48]  protocol_id=None
[2025-06-04 14:53:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 14:53:48]  replicas=None
[2025-06-04 14:53:48]  scope=mc23_13p6TeV
[2025-06-04 14:53:48]  status=None
[2025-06-04 14:53:48]  status_code=0
[2025-06-04 14:53:48]  storage_token=
[2025-06-04 14:53:48]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6678072315/log.45006595._045634.job.log.tgz.1
[2025-06-04 14:53:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/e9/log.45006595._045634.job.log.tgz.1
[2025-06-04 14:53:48]  workdir=None
[2025-06-04 14:53:48] ]
[2025-06-04 14:53:48] 2025-06-04 12:53:23,458 | INFO     | transferring file log.45006595._045634.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6678072315/log.45006595._045634.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 14:53:48] 2025-06-04 12:53:23,458 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6678072315/log.45006595._045634.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0456
[2025-06-04 14:53:48] 2025-06-04 12:53:23,471 | INFO     | adding to output.list: log.45006595._045634.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/16/e9/log.45006595._045634.job.log.tg
[2025-06-04 14:53:48] 2025-06-04 12:53:23,472 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 14:53:48] 2025-06-04 12:53:23,472 | INFO     | summary of transferred files:
[2025-06-04 14:53:48] 2025-06-04 12:53:23,472 | INFO     |  -- lfn=log.45006595._045634.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 14:53:48] 2025-06-04 12:53:23,472 | INFO     | stage-out finished correctly
[2025-06-04 14:53:48] 2025-06-04 12:53:24,889 | INFO     | 4343s have passed since pilot start - server update state is 'RUNNING'
[2025-06-04 14:53:48] 2025-06-04 12:53:25,158 | INFO     | monitor loop #335: job 0:6678072315 is in state 'finished'
[2025-06-04 14:53:48] 2025-06-04 12:53:25,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 14:53:48] 2025-06-04 12:53:25,363 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 14:53:48] 2025-06-04 12:53:26,030 | INFO     | job 6678072315 has state=finished
[2025-06-04 14:53:48] 2025-06-04 12:53:26,030 | INFO     | preparing for final server update for job 6678072315 in state='finished'
[2025-06-04 14:53:48] 2025-06-04 12:53:26,031 | INFO     | this job has now completed (state=finished)
[2025-06-04 14:53:48] 2025-06-04 12:53:26,031 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 14:53:48] 2025-06-04 12:53:26,031 | INFO     | log transfer has been attempted: DONE
[2025-06-04 14:53:48] 2025-06-04 12:53:26,031 | INFO     | job 6678072315 has finished - writing final server update
[2025-06-04 14:53:48] 2025-06-04 12:53:26,031 | INFO     | total number of processed events: 400 (read)
[2025-06-04 14:53:48] 2025-06-04 12:53:26,032 | INFO     | executing command: lscpu
[2025-06-04 14:53:48] 2025-06-04 12:53:26,048 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 14:53:48] 2025-06-04 12:53:27,661 | INFO     | monitor loop #336: job 0:6678072315 is in state 'finished'
[2025-06-04 14:53:48] 2025-06-04 12:53:27,661 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 14:53:48] 2025-06-04 12:53:29,403 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 14:53:48] 2025-06-04 12:53:29,403 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678072315/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 14:53:48] 2025-06-04 12:53:29,403 | INFO     | extracted standard info from prmon json
[2025-06-04 14:53:48] 2025-06-04 12:53:29,403 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 14:53:48] 2025-06-04 12:53:29,404 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 14:53:48] 2025-06-04 12:53:29,404 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 14:53:48] 2025-06-04 12:53:29,404 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 14:53:48] 2025-06-04 12:53:29,404 | INFO     | fitting pss+swap vs Time
[2025-06-04 14:53:48] 2025-06-04 12:53:29,404 | INFO     | sum of square deviations: 81266640.0
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | sum of deviations: -4861505410.0
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | mean x: 1749039508.5
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | mean y: 2403735.34375
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | -- intersect: 104632852747.0968
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | intersect: 104632852747.0968
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | chi2: 0.024704363859050917
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | -- intersect: 104632852747.0968
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | current memory leak: -59.82 B/s (using 64 data points, chi2=0.02)
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | ..............................
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | . Timing measurements:
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | . get job = 0 s
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | . initial setup = 1 s
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | . payload setup = 3 s
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | . stage-in = 0 s
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | . payload execution = 4320 s
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | . stage-out = 0 s
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | . log creation = 0 s
[2025-06-04 14:53:48] 2025-06-04 12:53:29,405 | INFO     | ..............................
[2025-06-04 14:53:48] 2025-06-04 12:53:29,469 | INFO     | 
[2025-06-04 14:53:48] 2025-06-04 12:53:29,469 | INFO     | job summary report
[2025-06-04 14:53:48] 2025-06-04 12:53:29,469 | INFO     | --------------------------------------------------
[2025-06-04 14:53:48] 2025-06-04 12:53:29,469 | INFO     | PanDA job id: 6678072315
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | task id: 45006595
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | errors: (none)
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | pilot state: finished 
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | transexitcode: 0
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | exeerrorcode: 0
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | exeerrordiag: 
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | exitcode: 0
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | exitmsg: OK
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | cpuconsumptiontime: 12376 s
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | nevents: 400
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | neventsw: 0
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | pid: 1715723
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | pgrp: 1715723
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | corecount: 3
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | event service: False
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | sizes: {0: 2397345, 2: 2397551, 10: 2397579, 4326: 2423664, 4327: 2432639, 4329: 2432695, 4333: 2432993}
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | --------------------------------------------------
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | 
[2025-06-04 14:53:48] 2025-06-04 12:53:29,470 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 14:53:48] 2025-06-04 12:53:29,484 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,484 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,484 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,484 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,484 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,484 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,484 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,484 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,484 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,484 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,485 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,485 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,485 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 14:53:48] 2025-06-04 12:53:29,485 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,485 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 14:53:48] 2025-06-04 12:53:29,485 | INFO     | job 6678072315 has completed (purged errors)
[2025-06-04 14:53:48] 2025-06-04 12:53:29,485 | INFO     | overall cleanup function is called
[2025-06-04 14:53:48] 2025-06-04 12:53:30,492 | INFO     | --- collectZombieJob: --- 10, [1715723]
[2025-06-04 14:53:48] 2025-06-04 12:53:30,492 | INFO     | zombie collector waiting for pid 1715723
[2025-06-04 14:53:48] 2025-06-04 12:53:30,492 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 14:53:48] 2025-06-04 12:53:30,492 | INFO     | collected zombie processes
[2025-06-04 14:53:48] 2025-06-04 12:53:30,492 | INFO     | will attempt to kill all subprocesses of pid=1715723
[2025-06-04 14:53:48] 2025-06-04 12:53:30,538 | INFO     | process IDs to be killed: [1715723] (in reverse order)
[2025-06-04 14:53:48] 2025-06-04 12:53:30,562 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 14:53:48] 2025-06-04 12:53:30,562 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 14:53:48] 2025-06-04 12:53:30,563 | INFO     | did not find any defunct processes belonging to 1715723
[2025-06-04 14:53:48] 2025-06-04 12:53:30,564 | INFO     | did not find any defunct processes belonging to 1715723
[2025-06-04 14:53:48] 2025-06-04 12:53:30,565 | INFO     | ready for new job
[2025-06-04 14:53:48] 2025-06-04 12:53:30,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 14:53:48] 2025-06-04 12:53:30,565 | INFO     | **************************************
[2025-06-04 14:53:48] 2025-06-04 12:53:30,565 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 14:53:48] 2025-06-04 12:53:30,565 | INFO     | **************************************
[2025-06-04 14:53:48] 2025-06-04 12:53:30,565 | INFO     | 
[2025-06-04 14:53:48] 2025-06-04 12:53:30,566 | INFO     | architecture information:
[2025-06-04 14:53:48] 2025-06-04 12:53:30,566 | INFO     | executing command: cat /etc/os-release
[2025-06-04 14:53:48] 2025-06-04 12:53:30,574 | INFO     | cat /etc/os-release:
[2025-06-04 14:53:48] NAME="CentOS Linux"
[2025-06-04 14:53:48] VERSION="7 (Core)"
[2025-06-04 14:53:48] ID="centos"
[2025-06-04 14:53:48] ID_LIKE="rhel fedora"
[2025-06-04 14:53:48] VERSION_ID="7"
[2025-06-04 14:53:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 14:53:48] ANSI_COLOR="0;31"
[2025-06-04 14:53:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 14:53:48] HOME_URL="https://www.centos.org/"
[2025-06-04 14:53:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 14:53:48] 
[2025-06-04 14:53:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 14:53:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 14:53:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 14:53:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 14:53:48] 
[2025-06-04 14:53:48] 2025-06-04 12:53:30,574 | INFO     | **************************************
[2025-06-04 14:53:48] 2025-06-04 12:53:31,077 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 14:53:48] 2025-06-04 12:53:31,090 | INFO     | sufficient remaining disk space (343876304896 B)
[2025-06-04 14:53:48] 2025-06-04 12:53:31,090 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 14:53:48] 2025-06-04 12:53:31,090 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 14:53:48] 2025-06-04 12:53:31,090 | INFO     | update_server=False
[2025-06-04 14:53:48] 2025-06-04 12:53:31,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 14:53:48] 2025-06-04 12:53:31,091 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:53:48] 2025-06-04 12:53:31,170 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:53:48] 2025-06-04 12:53:31,170 | INFO     | aborting loop
[2025-06-04 14:53:48] 2025-06-04 12:53:31,401 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 14:53:48] 2025-06-04 12:53:31,513 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 14:53:48] 2025-06-04 12:53:31,700 | INFO     | all payload control threads have been joined
[2025-06-04 14:53:48] 2025-06-04 12:53:31,910 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 14:53:48] 2025-06-04 12:53:31,911 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 14:53:48] 2025-06-04 12:53:31,911 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 14:53:48] 2025-06-04 12:53:31,933 | INFO     | all data control threads have been joined
[2025-06-04 14:53:48] 2025-06-04 12:53:32,096 | INFO     | [job] retrieve thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:32,096 | INFO     | [job] queue monitor thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:32,113 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:32,139 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:32,172 | INFO     | [job] job monitor thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:32,246 | INFO     | [payload] failed_post thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:32,436 | INFO     | all job control threads have been joined
[2025-06-04 14:53:48] 2025-06-04 12:53:32,552 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:32,706 | INFO     | [payload] control thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:32,935 | INFO     | [data] copytool_in thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:32,938 | INFO     | [data] control thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:33,188 | INFO     | [payload] validate_post thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:33,442 | INFO     | [job] control thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:33,486 | INFO     | [job] validate thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:33,519 | INFO     | [data] copytool_out thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:35,408 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:41,195 | INFO     | job.realtimelogging is not enabled
[2025-06-04 14:53:48] 2025-06-04 12:53:42,201 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 14:53:48] 2025-06-04 12:53:43,364 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140351657838400)>', '<ExcThread(monitor, started 140350798685952)>']
[2025-06-04 14:53:48] 2025-06-04 12:53:43,966 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 14:53:48] 2025-06-04 12:53:43,966 | INFO     | [monitor] control thread has ended
[2025-06-04 14:53:48] 2025-06-04 12:53:48,381 | INFO     | all workflow threads have been joined
[2025-06-04 14:53:48] 2025-06-04 12:53:48,381 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 14:53:48] 2025-06-04 12:53:48,381 | INFO     | traces error code: 0
[2025-06-04 14:53:48] 2025-06-04 12:53:48,381 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 14:53:48] 2025-06-04 12:53:48,431 [wrapper] ==== pilot stdout END ====
[2025-06-04 14:53:48] 2025-06-04 12:53:48,434 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 14:53:48] 2025-06-04 12:53:48,436 [wrapper] pilotpid: 1709231
[2025-06-04 14:53:48] 2025-06-04 12:53:48,438 [wrapper] Pilot exit status: 0
[2025-06-04 14:53:48] 2025-06-04 12:53:48,446 [wrapper] pandaids: 6678072315
[2025-06-04 14:53:48] 2025-06-04 12:53:48,462 [wrapper] cleanup supervisor_pilot 1725187 1709232
[2025-06-04 14:53:48] 2025-06-04 12:53:48,464 [wrapper] Test setup, not cleaning
[2025-06-04 14:53:48] 2025-06-04 12:53:48,466 [wrapper] apfmon messages muted
[2025-06-04 14:53:48] 2025-06-04 12:53:48,469 [wrapper] ==== wrapper stdout END ====
[2025-06-04 14:53:48] 2025-06-04 12:53:48,471 [wrapper] ==== wrapper stderr END ====
[2025-06-04 14:53:48]  *** Error codes and diagnostics ***
[2025-06-04 14:53:48]     "exeErrorCode": 0,
[2025-06-04 14:53:48]     "exeErrorDiag": "",
[2025-06-04 14:53:48]     "pilotErrorCode": 0,
[2025-06-04 14:53:48]     "pilotErrorDiag": "",
[2025-06-04 14:53:48]  *** Listing of results directory ***
[2025-06-04 14:53:48] total 383172
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc    495897 Jun  3 22:49 pilot3.tar.gz
[2025-06-04 14:53:48] -rwx------ 1 boinc boinc     37140 Jun  3 23:01 runpilot2-wrapper.sh
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc      5111 Jun  3 23:01 queuedata.json
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc       100 Jun  4 13:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 14:53:48] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 13:40 run_atlas
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc       105 Jun  4 13:40 job.xml
[2025-06-04 14:53:48] -rw-r--r-- 2 boinc boinc 213383364 Jun  4 13:40 EVNT.45006593._001830.pool.root.1
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc      6921 Jun  4 13:40 init_data.xml
[2025-06-04 14:53:48] drwxrwx--x 2 boinc boinc      4096 Jun  4 13:40 shared
[2025-06-04 14:53:48] -rw-r--r-- 2 boinc boinc    508882 Jun  4 13:40 input.tar.gz
[2025-06-04 14:53:48] -rw-r--r-- 2 boinc boinc     15093 Jun  4 13:40 start_atlas.sh
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc         0 Jun  4 13:40 boinc_lockfile
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc      2525 Jun  4 13:40 pandaJob.out
[2025-06-04 14:53:48] -rw------- 1 boinc boinc    986812 Jun  4 13:41 agis_schedconf.cvmfs.json
[2025-06-04 14:53:48] -rw------- 1 boinc boinc   1598969 Jun  4 13:41 agis_ddmendpoints.agis.ALL.json
[2025-06-04 14:53:48] drwx------ 4 boinc boinc      4096 Jun  4 13:41 pilot3
[2025-06-04 14:53:48] -rw------- 1 boinc boinc 173818068 Jun  4 14:53 HITS.45006595._045634.pool.root.1
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc       529 Jun  4 14:53 boinc_task_state.xml
[2025-06-04 14:53:48] -rw------- 1 boinc boinc      1021 Jun  4 14:53 memory_monitor_summary.json
[2025-06-04 14:53:48] -rw------- 1 boinc boinc    233717 Jun  4 14:53 log.45006595._045634.job.log.tgz.1
[2025-06-04 14:53:48] -rw------- 1 boinc boinc        95 Jun  4 14:53 pilot_heartbeat.json
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc      8192 Jun  4 14:53 boinc_mmap_file
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc        27 Jun  4 14:53 wrapper_checkpoint.txt
[2025-06-04 14:53:48] -rw------- 1 boinc boinc      7667 Jun  4 14:53 heartbeat.json
[2025-06-04 14:53:48] -rw------- 1 boinc boinc      4429 Jun  4 14:53 pilotlog.txt
[2025-06-04 14:53:48] -rw------- 1 boinc boinc    429049 Jun  4 14:53 log.45006595._045634.job.log.1
[2025-06-04 14:53:48] -rw------- 1 boinc boinc       357 Jun  4 14:53 output.list
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc       620 Jun  4 14:53 runtime_log
[2025-06-04 14:53:48] -rw------- 1 boinc boinc    686080 Jun  4 14:53 result.tar.gz
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc      8743 Jun  4 14:53 runtime_log.err
[2025-06-04 14:53:48] -rw------- 1 boinc boinc       660 Jun  4 14:53 dqiNDmGwng7n9Rq4apOajLDm4fhM0noT9bVof3QYDmDxZKDm8g5bHo.diag
[2025-06-04 14:53:48] -rw-r--r-- 1 boinc boinc     21168 Jun  4 14:53 stderr.txt
[2025-06-04 14:53:48] HITS file was successfully produced:
[2025-06-04 14:53:48] -rw------- 1 boinc boinc 173818068 Jun  4 14:53 shared/HITS.pool.root.1
[2025-06-04 14:53:48]  *** Contents of shared directory: ***
[2025-06-04 14:53:48] total 379328
[2025-06-04 14:53:48] -rw-r--r-- 2 boinc boinc 213383364 Jun  4 13:40 ATLAS.root_0
[2025-06-04 14:53:48] -rw-r--r-- 2 boinc boinc    508882 Jun  4 13:40 input.tar.gz
[2025-06-04 14:53:48] -rw-r--r-- 2 boinc boinc     15093 Jun  4 13:40 start_atlas.sh
[2025-06-04 14:53:48] -rw------- 1 boinc boinc 173818068 Jun  4 14:53 HITS.pool.root.1
[2025-06-04 14:53:48] -rw------- 1 boinc boinc    686080 Jun  4 14:53 result.tar.gz
14:54:10 (1705596): run_atlas exited; CPU time 12390.552048
14:54:10 (1705596): called boinc_finish(0)

</stderr_txt>
]]>

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