Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:25:19 (23865): wrapper (7.7.26015): starting
21:25:19 (23865): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 21:25:19] Arguments: --nthreads 12
[2025-06-03 21:25:19] Threads: 12
[2025-06-03 21:25:19] Checking for CVMFS
[2025-06-03 21:25:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 21:25:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 21:25:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 21:25:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 21:25:20] 2.11.2.0 2984 34972 83328 146763 1 55 16576615 20275200 1 130560 0 15371054 99.982 6296343 7685 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 21:25:20] CVMFS is ok
[2025-06-03 21:25:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 21:25:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 21:25:20] Further information can be found at the LHC@home message board.
[2025-06-03 21:25:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 21:25:20] Checking for apptainer binary...
[2025-06-03 21:25:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 21:25:20] Running /usr/bin/apptainer --version
[2025-06-03 21:25:20] apptainer version 1.3.2-1.el7
[2025-06-03 21:25:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 21:25:21] c-205-26.aglt2.org
[2025-06-03 21:25:21] apptainer works
[2025-06-03 21:25:21] Set ATHENA_PROC_NUMBER=12
[2025-06-03 21:25:21] Set ATHENA_CORE_NUMBER=12
[2025-06-03 21:25:21] Starting ATLAS job with PandaID=6677977977
[2025-06-03 21:25:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 22:29:16]  *** The last 200 lines of the pilot log: ***
[2025-06-03 22:29:16]  workdir=None
[2025-06-03 22:29:16] ]
[2025-06-03 22:29:16] 2025-06-04 02:28:48,982 | INFO     | transferring file log.45006595._043707.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677977977/log.45006595._043707.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 22:29:16] 2025-06-04 02:28:48,983 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677977977/log.45006595._043707.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._043707.job
[2025-06-03 22:29:16] 2025-06-04 02:28:49,006 | INFO     | adding to output.list: log.45006595._043707.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/c5/log.45006595._043707.job.log.tg
[2025-06-03 22:29:16] 2025-06-04 02:28:49,007 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 22:29:16] 2025-06-04 02:28:49,007 | INFO     | summary of transferred files:
[2025-06-03 22:29:16] 2025-06-04 02:28:49,007 | INFO     |  -- lfn=log.45006595._043707.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 22:29:16] 2025-06-04 02:28:49,007 | INFO     | stage-out finished correctly
[2025-06-03 22:29:16] 2025-06-04 02:28:49,655 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 22:29:16] 2025-06-04 02:28:50,478 | WARNING  | process 1545 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 22:29:16] 2025-06-04 02:28:50,478 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677977977/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 22:29:16] 2025-06-04 02:28:50,479 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677977977/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 22:29:16] 2025-06-04 02:28:50,480 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4119677 B
[2025-06-03 22:29:16] 2025-06-04 02:28:50,480 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16030 B
[2025-06-03 22:29:16] 2025-06-04 02:28:50,480 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 22:29:16] 2025-06-04 02:28:50,499 | INFO     | sufficient remaining disk space (29427236864 B)
[2025-06-03 22:29:16] 2025-06-04 02:28:50,499 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-03 22:29:16] 2025-06-04 02:28:50,500 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6677977977: 4413827 B (within 2537553920 B limit)
[2025-06-03 22:29:16] 2025-06-04 02:28:50,500 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6677977977/HITS.45006595._043707.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-03 22:29:16] 2025-06-04 02:28:50,501 | INFO     | total size of present files: 0 B (workdir size: 4413827 B)
[2025-06-03 22:29:16] 2025-06-04 02:28:50,501 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6677977977/HITS.45006595._043707.pool.root.1 since it does not exist
[2025-06-03 22:29:16] 2025-06-04 02:28:50,594 | INFO     | number of running child processes to parent process 1545: 1
[2025-06-03 22:29:16] 2025-06-04 02:28:50,594 | INFO     | maximum number of monitored processes: 6
[2025-06-03 22:29:16] 2025-06-04 02:28:51,294 | INFO     | job 6677977977 has state=finished
[2025-06-03 22:29:16] 2025-06-04 02:28:51,295 | INFO     | preparing for final server update for job 6677977977 in state='finished'
[2025-06-03 22:29:16] 2025-06-04 02:28:51,295 | INFO     | this job has now completed (state=finished)
[2025-06-03 22:29:16] 2025-06-04 02:28:51,295 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 22:29:16] 2025-06-04 02:28:51,296 | INFO     | log transfer has been attempted: DONE
[2025-06-03 22:29:16] 2025-06-04 02:28:51,296 | INFO     | job 6677977977 has finished - writing final server update
[2025-06-03 22:29:16] 2025-06-04 02:28:51,296 | INFO     | total number of processed events: 400 (read)
[2025-06-03 22:29:16] 2025-06-04 02:28:51,297 | INFO     | executing command: lscpu
[2025-06-03 22:29:16] 2025-06-04 02:28:51,323 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 22:29:16] 2025-06-04 02:28:53,097 | INFO     | monitor loop #286: job 0:6677977977 is in state 'finished'
[2025-06-03 22:29:16] 2025-06-04 02:28:53,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 22:29:16] 2025-06-04 02:28:55,600 | INFO     | monitor loop #287: job 0:6677977977 is in state 'finished'
[2025-06-03 22:29:16] 2025-06-04 02:28:55,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 22:29:16] 2025-06-04 02:28:55,962 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-03 22:29:16] 2025-06-04 02:28:55,963 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677977977/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 22:29:16] 2025-06-04 02:28:55,964 | INFO     | extracted standard info from prmon json
[2025-06-03 22:29:16] 2025-06-04 02:28:55,964 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 22:29:16] 2025-06-04 02:28:55,964 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 22:29:16] 2025-06-04 02:28:55,964 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 22:29:16] 2025-06-04 02:28:55,964 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 22:29:16] 2025-06-04 02:28:55,966 | INFO     | fitting pss+swap vs Time
[2025-06-03 22:29:16] 2025-06-04 02:28:55,966 | INFO     | sum of square deviations: 51573060.0
[2025-06-03 22:29:16] 2025-06-04 02:28:55,967 | INFO     | sum of deviations: -5211017720.0
[2025-06-03 22:29:16] 2025-06-04 02:28:55,967 | INFO     | mean x: 1749002318.0
[2025-06-03 22:29:16] 2025-06-04 02:28:55,967 | INFO     | mean y: 2841550.345454545
[2025-06-03 22:29:16] 2025-06-04 02:28:55,967 | INFO     | -- intersect: 176724604257.8341
[2025-06-03 22:29:16] 2025-06-04 02:28:55,967 | INFO     | intersect: 176724604257.8341
[2025-06-03 22:29:16] 2025-06-04 02:28:55,967 | INFO     | chi2: 0.061398260389219805
[2025-06-03 22:29:16] 2025-06-04 02:28:55,967 | INFO     | -- intersect: 176724604257.8341
[2025-06-03 22:29:16] 2025-06-04 02:28:55,968 | INFO     | current memory leak: -101.04 B/s (using 55 data points, chi2=0.06)
[2025-06-03 22:29:16] 2025-06-04 02:28:55,968 | INFO     | ..............................
[2025-06-03 22:29:16] 2025-06-04 02:28:55,968 | INFO     | . Timing measurements:
[2025-06-03 22:29:16] 2025-06-04 02:28:55,968 | INFO     | . get job = 0 s
[2025-06-03 22:29:16] 2025-06-04 02:28:55,968 | INFO     | . initial setup = 2 s
[2025-06-03 22:29:16] 2025-06-04 02:28:55,968 | INFO     | . payload setup = 9 s
[2025-06-03 22:29:16] 2025-06-04 02:28:55,968 | INFO     | . stage-in = 0 s
[2025-06-03 22:29:16] 2025-06-04 02:28:55,969 | INFO     | . payload execution = 3763 s
[2025-06-03 22:29:16] 2025-06-04 02:28:55,969 | INFO     | . stage-out = 0 s
[2025-06-03 22:29:16] 2025-06-04 02:28:55,969 | INFO     | . log creation = 0 s
[2025-06-03 22:29:16] 2025-06-04 02:28:55,969 | INFO     | ..............................
[2025-06-03 22:29:16] 2025-06-04 02:28:56,051 | INFO     | 
[2025-06-03 22:29:16] 2025-06-04 02:28:56,052 | INFO     | job summary report
[2025-06-03 22:29:16] 2025-06-04 02:28:56,052 | INFO     | --------------------------------------------------
[2025-06-03 22:29:16] 2025-06-04 02:28:56,052 | INFO     | PanDA job id: 6677977977
[2025-06-03 22:29:16] 2025-06-04 02:28:56,052 | INFO     | task id: 45006595
[2025-06-03 22:29:16] 2025-06-04 02:28:56,052 | INFO     | errors: (none)
[2025-06-03 22:29:16] 2025-06-04 02:28:56,053 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 22:29:16] 2025-06-04 02:28:56,053 | INFO     | pilot state: finished 
[2025-06-03 22:29:16] 2025-06-04 02:28:56,053 | INFO     | transexitcode: 0
[2025-06-03 22:29:16] 2025-06-04 02:28:56,053 | INFO     | exeerrorcode: 0
[2025-06-03 22:29:16] 2025-06-04 02:28:56,053 | INFO     | exeerrordiag: 
[2025-06-03 22:29:16] 2025-06-04 02:28:56,053 | INFO     | exitcode: 0
[2025-06-03 22:29:16] 2025-06-04 02:28:56,054 | INFO     | exitmsg: OK
[2025-06-03 22:29:16] 2025-06-04 02:28:56,054 | INFO     | cpuconsumptiontime: 40023 s
[2025-06-03 22:29:16] 2025-06-04 02:28:56,054 | INFO     | nevents: 400
[2025-06-03 22:29:16] 2025-06-04 02:28:56,054 | INFO     | neventsw: 0
[2025-06-03 22:29:16] 2025-06-04 02:28:56,054 | INFO     | pid: 1545
[2025-06-03 22:29:16] 2025-06-04 02:28:56,054 | INFO     | pgrp: 1545
[2025-06-03 22:29:16] 2025-06-04 02:28:56,054 | INFO     | corecount: 12
[2025-06-03 22:29:16] 2025-06-04 02:28:56,055 | INFO     | event service: False
[2025-06-03 22:29:16] 2025-06-04 02:28:56,055 | INFO     | sizes: {0: 2405070, 1: 2405212, 5: 2405418, 11: 2405474, 3777: 2431069, 3778: 2440010, 3779: 2440194, 3785: 2440392}
[2025-06-03 22:29:16] 2025-06-04 02:28:56,055 | INFO     | --------------------------------------------------
[2025-06-03 22:29:16] 2025-06-04 02:28:56,055 | INFO     | 
[2025-06-03 22:29:16] 2025-06-04 02:28:56,055 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 22:29:16] 2025-06-04 02:28:56,080 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,080 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,081 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,081 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,081 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,081 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,082 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,082 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,082 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,082 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,082 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,082 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,083 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,083 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,083 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,083 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 22:29:16] 2025-06-04 02:28:56,083 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,084 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 22:29:16] 2025-06-04 02:28:56,084 | INFO     | job 6677977977 has completed (purged errors)
[2025-06-03 22:29:16] 2025-06-04 02:28:56,084 | INFO     | overall cleanup function is called
[2025-06-03 22:29:16] 2025-06-04 02:28:57,092 | INFO     | --- collectZombieJob: --- 10, [1545]
[2025-06-03 22:29:16] 2025-06-04 02:28:57,092 | INFO     | zombie collector waiting for pid 1545
[2025-06-03 22:29:16] 2025-06-04 02:28:57,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 22:29:16] 2025-06-04 02:28:57,092 | INFO     | collected zombie processes
[2025-06-03 22:29:16] 2025-06-04 02:28:57,092 | INFO     | will attempt to kill all subprocesses of pid=1545
[2025-06-03 22:29:16] 2025-06-04 02:28:57,183 | INFO     | process IDs to be killed: [1545] (in reverse order)
[2025-06-03 22:29:16] 2025-06-04 02:28:57,235 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 22:29:16] 2025-06-04 02:28:57,236 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 22:29:16] 2025-06-04 02:28:57,240 | INFO     | did not find any defunct processes belonging to 1545
[2025-06-03 22:29:16] 2025-06-04 02:28:57,243 | INFO     | did not find any defunct processes belonging to 1545
[2025-06-03 22:29:16] 2025-06-04 02:28:57,243 | INFO     | ready for new job
[2025-06-03 22:29:16] 2025-06-04 02:28:57,244 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 22:29:16] 2025-06-04 02:28:57,245 | INFO     | **************************************
[2025-06-03 22:29:16] 2025-06-04 02:28:57,245 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 22:29:16] 2025-06-04 02:28:57,245 | INFO     | **************************************
[2025-06-03 22:29:16] 2025-06-04 02:28:57,246 | INFO     | 
[2025-06-03 22:29:16] 2025-06-04 02:28:57,246 | INFO     | architecture information:
[2025-06-03 22:29:16] 2025-06-04 02:28:57,247 | INFO     | executing command: cat /etc/os-release
[2025-06-03 22:29:16] 2025-06-04 02:28:57,260 | INFO     | cat /etc/os-release:
[2025-06-03 22:29:16] NAME="CentOS Linux"
[2025-06-03 22:29:16] VERSION="7 (Core)"
[2025-06-03 22:29:16] ID="centos"
[2025-06-03 22:29:16] ID_LIKE="rhel fedora"
[2025-06-03 22:29:16] VERSION_ID="7"
[2025-06-03 22:29:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 22:29:16] ANSI_COLOR="0;31"
[2025-06-03 22:29:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 22:29:16] HOME_URL="https://www.centos.org/"
[2025-06-03 22:29:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 22:29:16] 
[2025-06-03 22:29:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 22:29:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 22:29:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 22:29:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 22:29:16] 
[2025-06-03 22:29:16] 2025-06-04 02:28:57,261 | INFO     | **************************************
[2025-06-03 22:29:16] 2025-06-04 02:28:57,764 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 22:29:16] 2025-06-04 02:28:57,781 | INFO     | sufficient remaining disk space (29432479744 B)
[2025-06-03 22:29:16] 2025-06-04 02:28:57,781 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 22:29:16] 2025-06-04 02:28:57,781 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 22:29:16] 2025-06-04 02:28:57,781 | INFO     | update_server=False
[2025-06-03 22:29:16] 2025-06-04 02:28:57,782 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 22:29:16] 2025-06-04 02:28:57,782 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 22:29:16] 2025-06-04 02:28:57,782 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 22:29:16] 2025-06-04 02:28:57,783 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 22:29:16] 2025-06-04 02:28:57,783 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 22:29:16] 2025-06-04 02:28:57,783 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 22:29:16] 2025-06-04 02:28:57,784 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 22:29:16] 2025-06-04 02:28:58,103 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 22:29:16] 2025-06-04 02:28:58,103 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 22:29:16] 2025-06-04 02:28:58,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 22:29:16] 2025-06-04 02:28:58,104 | INFO     | will abort loop
[2025-06-03 22:29:16] 2025-06-04 02:28:58,274 | INFO     | all data control threads have been joined
[2025-06-03 22:29:16] 2025-06-04 02:28:58,781 | INFO     | all payload control threads have been joined
[2025-06-03 22:29:16] 2025-06-04 02:28:58,786 | INFO     | [job] retrieve thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:28:58,788 | INFO     | [job] queue monitor thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:28:58,894 | INFO     | all job control threads have been joined
[2025-06-03 22:29:16] 2025-06-04 02:28:58,979 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:28:59,106 | INFO     | [job] job monitor thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:28:59,208 | INFO     | [job] validate thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:28:59,280 | INFO     | [data] control thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:28:59,375 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:28:59,575 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:28:59,760 | INFO     | [payload] validate_post thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:28:59,786 | INFO     | [payload] control thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:28:59,789 | INFO     | [data] copytool_out thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:28:59,859 | INFO     | [payload] failed_post thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:28:59,899 | INFO     | [job] control thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:29:00,139 | INFO     | [data] copytool_in thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:29:00,246 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 22:29:16] 2025-06-04 02:29:04,252 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:29:08,178 | INFO     | job.realtimelogging is not enabled
[2025-06-03 22:29:16] 2025-06-04 02:29:09,180 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 22:29:16] 2025-06-04 02:29:10,928 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140621786441536)>', '<ExcThread(monitor, started 140621054473984)>']
[2025-06-03 22:29:16] 2025-06-04 02:29:11,853 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 22:29:16] 2025-06-04 02:29:11,854 | INFO     | [monitor] control thread has ended
[2025-06-03 22:29:16] 2025-06-04 02:29:15,954 | INFO     | all workflow threads have been joined
[2025-06-03 22:29:16] 2025-06-04 02:29:15,954 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 22:29:16] 2025-06-04 02:29:15,992 | INFO     | traces error code: 0
[2025-06-03 22:29:16] 2025-06-04 02:29:15,992 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 22:29:16] 2025-06-04 02:29:16,089 [wrapper] ==== pilot stdout END ====
[2025-06-03 22:29:16] 2025-06-04 02:29:16,093 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 22:29:16] 2025-06-04 02:29:16,096 [wrapper] pilotpid: 27458
[2025-06-03 22:29:16] 2025-06-04 02:29:16,100 [wrapper] Pilot exit status: 0
[2025-06-03 22:29:16] 2025-06-04 02:29:16,115 [wrapper] pandaids: 6677977977
[2025-06-03 22:29:16] 2025-06-04 02:29:16,156 [wrapper] cleanup supervisor_pilot 17878 27459
[2025-06-03 22:29:16] 2025-06-04 02:29:16,160 [wrapper] Test setup, not cleaning
[2025-06-03 22:29:16] 2025-06-04 02:29:16,165 [wrapper] apfmon messages muted
[2025-06-03 22:29:16] 2025-06-04 02:29:16,169 [wrapper] ==== wrapper stdout END ====
[2025-06-03 22:29:16] 2025-06-04 02:29:16,172 [wrapper] ==== wrapper stderr END ====
[2025-06-03 22:29:16]  *** Error codes and diagnostics ***
[2025-06-03 22:29:16]     "exeErrorCode": 0,
[2025-06-03 22:29:16]     "exeErrorDiag": "",
[2025-06-03 22:29:16]     "pilotErrorCode": 0,
[2025-06-03 22:29:16]     "pilotErrorDiag": "",
[2025-06-03 22:29:16]  *** Listing of results directory ***
[2025-06-03 22:29:16] total 381668
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 14:57 pilot3.tar.gz
[2025-06-03 22:29:16] -rwx------ 1 boincer umatlas     37140 Jun  3 15:16 runpilot2-wrapper.sh
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 15:16 queuedata.json
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas       100 Jun  3 21:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 22:29:16] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 21:25 run_atlas
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas       105 Jun  3 21:25 job.xml
[2025-06-03 22:29:16] -rw-r--r-- 2 boincer umatlas 213008614 Jun  3 21:25 EVNT.45006593._001752.pool.root.1
[2025-06-03 22:29:16] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 21:25 start_atlas.sh
[2025-06-03 22:29:16] drwxrwx--x 2 boincer umatlas      4096 Jun  3 21:25 shared
[2025-06-03 22:29:16] -rw-r--r-- 2 boincer umatlas    508873 Jun  3 21:25 input.tar.gz
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas         0 Jun  3 21:25 boinc_lockfile
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 21:25 pandaJob.out
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas    986077 Jun  3 21:25 agis_schedconf.cvmfs.json
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas   1603667 Jun  3 21:25 agis_ddmendpoints.agis.ALL.json
[2025-06-03 22:29:16] drwx------ 4 boincer umatlas      4096 Jun  3 21:25 pilot3
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas      5867 Jun  3 22:19 init_data.xml
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas 172525948 Jun  3 22:28 HITS.45006595._043707.pool.root.1
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas        95 Jun  3 22:28 pilot_heartbeat.json
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas       530 Jun  3 22:28 boinc_task_state.xml
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas      1049 Jun  3 22:28 memory_monitor_summary.json
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas    353867 Jun  3 22:28 log.45006595._043707.job.log.tgz.1
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas      7753 Jun  3 22:28 heartbeat.json
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 22:29 boinc_mmap_file
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas      4734 Jun  3 22:29 pilotlog.txt
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas        27 Jun  3 22:29 wrapper_checkpoint.txt
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas    374648 Jun  3 22:29 log.45006595._043707.job.log.1
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas       357 Jun  3 22:29 output.list
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas       620 Jun  3 22:29 runtime_log
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas    747520 Jun  3 22:29 result.tar.gz
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas      8661 Jun  3 22:29 runtime_log.err
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas       659 Jun  3 22:29 jxIODmoImg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaslKDm34DTGo.diag
[2025-06-03 22:29:16] -rw-r--r-- 1 boincer umatlas     22441 Jun  3 22:29 stderr.txt
[2025-06-03 22:29:16] HITS file was successfully produced:
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas 172525948 Jun  3 22:28 shared/HITS.pool.root.1
[2025-06-03 22:29:16]  *** Contents of shared directory: ***
[2025-06-03 22:29:16] total 377756
[2025-06-03 22:29:16] -rw-r--r-- 2 boincer umatlas 213008614 Jun  3 21:25 ATLAS.root_0
[2025-06-03 22:29:16] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 21:25 start_atlas.sh
[2025-06-03 22:29:16] -rw-r--r-- 2 boincer umatlas    508873 Jun  3 21:25 input.tar.gz
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas 172525948 Jun  3 22:28 HITS.pool.root.1
[2025-06-03 22:29:16] -rw------- 1 boincer umatlas    747520 Jun  3 22:29 result.tar.gz
22:29:18 (23865): run_atlas exited; CPU time 39992.727521
22:29:18 (23865): called boinc_finish(0)

</stderr_txt>
]]>

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