Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:22:41 (29327): wrapper (7.7.26015): starting
15:22:41 (29327): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 15:22:41] Arguments: --nthreads 8
[2025-06-04 15:22:41] Threads: 8
[2025-06-04 15:22:41] Checking for CVMFS
[2025-06-04 15:22:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 15:22:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 15:22:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 15:22:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 15:22:43] 2.11.2.0 16161 33250 90532 146780 0 60 18011681 25165824 4684 130560 0 17699233 99.806 18821257 2143 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 15:22:43] CVMFS is ok
[2025-06-04 15:22:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 15:22:43] Checking for apptainer binary...
[2025-06-04 15:22:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 15:22:43] Running /usr/bin/apptainer --version
[2025-06-04 15:22:43] apptainer version 1.3.2-1.el7
[2025-06-04 15:22:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 15:53:08] cg-vwn420.simple-grid.lan
[2025-06-04 15:53:08] apptainer works
[2025-06-04 15:53:08] Set ATHENA_PROC_NUMBER=8
[2025-06-04 15:53:08] Set ATHENA_CORE_NUMBER=8
[2025-06-04 15:53:08] Starting ATLAS job with PandaID=6678071613
[2025-06-04 15:53:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 22:16:12]  *** The last 200 lines of the pilot log: ***
[2025-06-04 22:16:12] 2025-06-04 17:50:35,086 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 22:16:12] 2025-06-04 17:50:35,086 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 22:16:12] 2025-06-04 17:50:35,087 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 22:16:12] 2025-06-04 17:50:35,091 | INFO     | fitting pss+swap vs Time
[2025-06-04 22:16:12] 2025-06-04 17:50:35,092 | INFO     | sum of square deviations: 3346927870.0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,094 | INFO     | sum of deviations: 86443023017.99998
[2025-06-04 22:16:12] 2025-06-04 17:50:35,094 | INFO     | mean x: 1749052604.0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,094 | INFO     | mean y: 2424206.0226244344
[2025-06-04 22:16:12] 2025-06-04 17:50:35,094 | INFO     | -- intersect: -45171359149.89559
[2025-06-04 22:16:12] 2025-06-04 17:50:35,095 | INFO     | intersect: -45171359149.89559
[2025-06-04 22:16:12] 2025-06-04 17:50:35,095 | INFO     | chi2: 7.649410846550613
[2025-06-04 22:16:12] 2025-06-04 17:50:35,096 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,097 | INFO     | sum of deviations: 98948834867.00002
[2025-06-04 22:16:12] 2025-06-04 17:50:35,097 | INFO     | mean x: 1749052451.5
[2025-06-04 22:16:12] 2025-06-04 17:50:35,098 | INFO     | mean y: 2432610.0833333335
[2025-06-04 22:16:12] 2025-06-04 17:50:35,098 | INFO     | -- intersect: -55381418278.73242
[2025-06-04 22:16:12] 2025-06-04 17:50:35,098 | INFO     | intersect: -55381418278.73242
[2025-06-04 22:16:12] 2025-06-04 17:50:35,098 | INFO     | chi2: 6.954787747921069
[2025-06-04 22:16:12] 2025-06-04 17:50:35,098 | INFO     | current chi2=6.954787747921069 (change=9.0807398447264 %)
[2025-06-04 22:16:12] 2025-06-04 17:50:35,099 | INFO     | right removable region: 215
[2025-06-04 22:16:12] 2025-06-04 17:50:35,099 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,101 | INFO     | sum of deviations: 9191139467.499998
[2025-06-04 22:16:12] 2025-06-04 17:50:35,101 | INFO     | mean x: 1749052756.5
[2025-06-04 22:16:12] 2025-06-04 17:50:35,101 | INFO     | mean y: 2477223.967592593
[2025-06-04 22:16:12] 2025-06-04 17:50:35,101 | INFO     | -- intersect: -5142007672.869552
[2025-06-04 22:16:12] 2025-06-04 17:50:35,101 | INFO     | intersect: -5142007672.869552
[2025-06-04 22:16:12] 2025-06-04 17:50:35,102 | INFO     | chi2: 2.5771938439603117
[2025-06-04 22:16:12] 2025-06-04 17:50:35,102 | INFO     | current chi2=2.5771938439603117 (change=66.30859688857662 %)
[2025-06-04 22:16:12] 2025-06-04 17:50:35,102 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,104 | INFO     | sum of deviations: -31077937729.000004
[2025-06-04 22:16:12] 2025-06-04 17:50:35,104 | INFO     | mean x: 1749052909.0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,104 | INFO     | mean y: 2505996.289099526
[2025-06-04 22:16:12] 2025-06-04 17:50:35,104 | INFO     | -- intersect: 18663686098.435772
[2025-06-04 22:16:12] 2025-06-04 17:50:35,104 | INFO     | intersect: 18663686098.435772
[2025-06-04 22:16:12] 2025-06-04 17:50:35,105 | INFO     | chi2: 0.9446597871857444
[2025-06-04 22:16:12] 2025-06-04 17:50:35,105 | INFO     | current chi2=0.9446597871857444 (change=63.345411933232455 %)
[2025-06-04 22:16:12] 2025-06-04 17:50:35,105 | INFO     | sum of square deviations: 2710627567.5
[2025-06-04 22:16:12] 2025-06-04 17:50:35,107 | INFO     | sum of deviations: -31568789418.0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,107 | INFO     | mean x: 1749053061.5
[2025-06-04 22:16:12] 2025-06-04 17:50:35,107 | INFO     | mean y: 2506309.3203883497
[2025-06-04 22:16:12] 2025-06-04 17:50:35,107 | INFO     | -- intersect: 20372507869.63312
[2025-06-04 22:16:12] 2025-06-04 17:50:35,107 | INFO     | intersect: 20372507869.63312
[2025-06-04 22:16:12] 2025-06-04 17:50:35,108 | INFO     | chi2: 0.9155655195856343
[2025-06-04 22:16:12] 2025-06-04 17:50:35,108 | INFO     | current chi2=0.9155655195856343 (change=3.0798672701825778 %)
[2025-06-04 22:16:12] 2025-06-04 17:50:35,108 | INFO     | left removable region: 30
[2025-06-04 22:16:12] 2025-06-04 17:50:35,108 | INFO     | sum of square deviations: 1963274020.0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,109 | INFO     | sum of deviations: 4409974504.000001
[2025-06-04 22:16:12] 2025-06-04 17:50:35,110 | INFO     | mean x: 1749053336.0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,110 | INFO     | mean y: 2498227.9405405405
[2025-06-04 22:16:12] 2025-06-04 17:50:35,110 | INFO     | -- intersect: -3926286312.2308555
[2025-06-04 22:16:12] 2025-06-04 17:50:35,110 | INFO     | intersect: -3926286312.2308555
[2025-06-04 22:16:12] 2025-06-04 17:50:35,110 | INFO     | chi2: 0.001682405836509681
[2025-06-04 22:16:12] 2025-06-04 17:50:35,110 | INFO     | -- intersect: -3926286312.2308555
[2025-06-04 22:16:12] 2025-06-04 17:50:35,111 | INFO     | current memory leak: 2.25 B/s (using 185 data points, chi2=0.00)
[2025-06-04 22:16:12] 2025-06-04 17:50:35,112 | INFO     | ..............................
[2025-06-04 22:16:12] 2025-06-04 17:50:35,112 | INFO     | . Timing measurements:
[2025-06-04 22:16:12] 2025-06-04 17:50:35,112 | INFO     | . get job = 0 s
[2025-06-04 22:16:12] 2025-06-04 17:50:35,112 | INFO     | . initial setup = 8 s
[2025-06-04 22:16:12] 2025-06-04 17:50:35,112 | INFO     | . payload setup = 170 s
[2025-06-04 22:16:12] 2025-06-04 17:50:35,112 | INFO     | . stage-in = 0 s
[2025-06-04 22:16:12] 2025-06-04 17:50:35,112 | INFO     | . payload execution = 13596 s
[2025-06-04 22:16:12] 2025-06-04 17:50:35,112 | INFO     | . stage-out = 4 s
[2025-06-04 22:16:12] 2025-06-04 17:50:35,112 | INFO     | . log creation = 0 s
[2025-06-04 22:16:12] 2025-06-04 17:50:35,113 | INFO     | ..............................
[2025-06-04 22:16:12] 2025-06-04 17:50:35,332 | INFO     | 
[2025-06-04 22:16:12] 2025-06-04 17:50:35,332 | INFO     | job summary report
[2025-06-04 22:16:12] 2025-06-04 17:50:35,332 | INFO     | --------------------------------------------------
[2025-06-04 22:16:12] 2025-06-04 17:50:35,332 | INFO     | PanDA job id: 6678071613
[2025-06-04 22:16:12] 2025-06-04 17:50:35,332 | INFO     | task id: 45006595
[2025-06-04 22:16:12] 2025-06-04 17:50:35,332 | INFO     | errors: (none)
[2025-06-04 22:16:12] 2025-06-04 17:50:35,332 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | pilot state: finished 
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | transexitcode: 0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | exeerrorcode: 0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | exeerrordiag: 
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | exitcode: 0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | exitmsg: OK
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | cpuconsumptiontime: 49862 s
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | nevents: 400
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | neventsw: 0
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | pid: 29264
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | pgrp: 29264
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | corecount: 8
[2025-06-04 22:16:12] 2025-06-04 17:50:35,333 | INFO     | event service: False
[2025-06-04 22:16:12] 2025-06-04 17:50:35,334 | INFO     | sizes: {0: 2396514, 1: 2397370, 2: 2397370, 12: 2397398, 23: 2397426, 34: 2397454, 45: 2397610, 55: 2397638, 66: 2397666, 77: 2397694, 88: 2397750, 91: 2398264, 98
[2025-06-04 22:16:12] 2025-06-04 17:50:35,334 | INFO     | --------------------------------------------------
[2025-06-04 22:16:12] 2025-06-04 17:50:35,334 | INFO     | 
[2025-06-04 22:16:12] 2025-06-04 17:50:35,334 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-06-04 22:16:12] 2025-06-04 17:50:35,861 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,862 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,862 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,862 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,862 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,862 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,862 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,862 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,862 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,863 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,863 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,863 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,863 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,863 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,863 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,863 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,863 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,863 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 22:16:12] 2025-06-04 17:50:35,863 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,864 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 22:16:12] 2025-06-04 17:50:35,864 | INFO     | job 6678071613 has completed (purged errors)
[2025-06-04 22:16:12] 2025-06-04 17:50:35,864 | INFO     | overall cleanup function is called
[2025-06-04 22:16:12] 2025-06-04 17:50:36,873 | INFO     | --- collectZombieJob: --- 10, [29264]
[2025-06-04 22:16:12] 2025-06-04 17:50:36,873 | INFO     | zombie collector waiting for pid 29264
[2025-06-04 22:16:12] 2025-06-04 17:50:36,873 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 22:16:12] 2025-06-04 17:50:36,873 | INFO     | collected zombie processes
[2025-06-04 22:16:12] 2025-06-04 17:50:36,873 | INFO     | will attempt to kill all subprocesses of pid=29264
[2025-06-04 22:16:12] 2025-06-04 17:50:37,012 | INFO     | process IDs to be killed: [29264] (in reverse order)
[2025-06-04 22:16:12] 2025-06-04 17:50:37,688 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 22:16:12] 2025-06-04 17:50:37,689 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 22:16:12] 2025-06-04 17:50:37,692 | INFO     | did not find any defunct processes belonging to 29264
[2025-06-04 22:16:12] 2025-06-04 17:50:37,696 | INFO     | did not find any defunct processes belonging to 29264
[2025-06-04 22:16:12] 2025-06-04 17:50:37,696 | INFO     | ready for new job
[2025-06-04 22:16:12] 2025-06-04 17:50:37,697 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 22:16:12] 2025-06-04 17:50:37,699 | INFO     | **************************************
[2025-06-04 22:16:12] 2025-06-04 17:50:37,699 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 22:16:12] 2025-06-04 17:50:37,699 | INFO     | **************************************
[2025-06-04 22:16:12] 2025-06-04 17:50:37,699 | INFO     | 
[2025-06-04 22:16:12] 2025-06-04 17:50:37,699 | INFO     | pilot is running in a VM
[2025-06-04 22:16:12] 2025-06-04 17:50:37,700 | INFO     | architecture information:
[2025-06-04 22:16:12] 2025-06-04 17:50:37,703 | INFO     | executing command: cat /etc/os-release
[2025-06-04 22:16:12] 2025-06-04 17:50:37,985 | INFO     | cat /etc/os-release:
[2025-06-04 22:16:12] NAME="CentOS Linux"
[2025-06-04 22:16:12] VERSION="7 (Core)"
[2025-06-04 22:16:12] ID="centos"
[2025-06-04 22:16:12] ID_LIKE="rhel fedora"
[2025-06-04 22:16:12] VERSION_ID="7"
[2025-06-04 22:16:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 22:16:12] ANSI_COLOR="0;31"
[2025-06-04 22:16:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 22:16:12] HOME_URL="https://www.centos.org/"
[2025-06-04 22:16:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 22:16:12] 
[2025-06-04 22:16:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 22:16:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 22:16:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 22:16:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 22:16:12] 
[2025-06-04 22:16:12] 2025-06-04 17:50:37,986 | INFO     | **************************************
[2025-06-04 22:16:12] 2025-06-04 17:50:38,252 | INFO     | 14057s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-04 22:16:12] 2025-06-04 17:50:38,489 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-06-04 22:16:12] 2025-06-04 17:50:38,796 | INFO     | sufficient remaining disk space (496607690752 B)
[2025-06-04 22:16:12] 2025-06-04 17:50:38,797 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 22:16:12] 2025-06-04 17:50:38,797 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 22:16:12] 2025-06-04 17:50:38,797 | INFO     | update_server=False
[2025-06-04 22:16:12] 2025-06-04 17:50:38,797 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 22:16:12] 2025-06-04 17:50:38,804 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 22:16:12] 2025-06-04 17:50:38,987 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:16:12] 2025-06-04 17:50:38,987 | INFO     | aborting loop
[2025-06-04 22:16:12] 2025-06-04 17:50:39,025 | INFO     | all payload control threads have been joined
[2025-06-04 22:16:12] 2025-06-04 17:50:39,437 | INFO     | PID=20655 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 22:16:12] 2025-06-04 17:50:39,437 | INFO     | .. there are 9 such processes running
[2025-06-04 22:16:12] 2025-06-04 17:50:39,438 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 22:16:12] 2025-06-04 17:50:39,438 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 22:16:12] 2025-06-04 17:50:39,438 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 22:16:12] 2025-06-04 17:50:39,582 | INFO     | all data control threads have been joined
[2025-06-04 22:16:12] 2025-06-04 17:50:39,803 | INFO     | [job] retrieve thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:39,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 22:16:12] 2025-06-04 17:50:39,993 | INFO     | [job] job monitor thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:40,031 | INFO     | [payload] control thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:40,052 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:40,255 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:16:12] 2025-06-04 17:50:40,304 | INFO     | all job control threads have been joined
[2025-06-04 22:16:12] 2025-06-04 17:50:40,475 | INFO     | [job] validate thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:40,476 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:40,504 | INFO     | [payload] failed_post thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:40,586 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:40,588 | INFO     | [data] control thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:40,811 | INFO     | [data] copytool_out thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:40,875 | INFO     | [payload] validate_post thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:40,968 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:41,144 | INFO     | [data] copytool_in thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:41,261 | INFO     | [job] queue monitor thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:41,310 | INFO     | [job] control thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:43,908 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 22:16:12] 2025-06-04 17:50:43,931 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139864033658688)>', '<ExcThread(monitor, started 139863303112448)>']
[2025-06-04 22:16:12] 2025-06-04 17:50:44,468 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 22:16:12] 2025-06-04 17:50:44,468 | INFO     | [monitor] control thread has ended
[2025-06-04 22:16:12] 2025-06-04 17:50:48,957 | INFO     | all workflow threads have been joined
[2025-06-04 22:16:12] 2025-06-04 17:50:48,957 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 22:16:12] 2025-06-04 17:50:48,957 | INFO     | traces error code: 0
[2025-06-04 22:16:12] 2025-06-04 17:50:48,958 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 22:16:12] 2025-06-04 17:50:49,309 [wrapper] ==== pilot stdout END ====
[2025-06-04 22:16:12] 2025-06-04 17:50:49,369 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 22:16:12] 2025-06-04 17:50:49,428 [wrapper] pilotpid: 20655
[2025-06-04 22:16:12] 2025-06-04 17:50:49,487 [wrapper] Pilot exit status: 0
[2025-06-04 22:16:12] 2025-06-04 17:50:49,786 [wrapper] pandaids: 6678071613
[2025-06-04 22:16:12] 2025-06-04 17:50:50,745 [wrapper] cleanup supervisor_pilot 11687 20656
[2025-06-04 22:16:12] 2025-06-04 17:50:50,861 [wrapper] Test setup, not cleaning
[2025-06-04 22:16:12] 2025-06-04 17:50:50,960 [wrapper] apfmon messages muted
[2025-06-04 22:16:12] 2025-06-04 17:50:51,081 [wrapper] ==== wrapper stdout END ====
[2025-06-04 22:16:12] 2025-06-04 17:50:51,177 [wrapper] ==== wrapper stderr END ====
[2025-06-04 22:16:12]  *** Error codes and diagnostics ***
[2025-06-04 22:16:12]     "exeErrorCode": 0,
[2025-06-04 22:16:12]     "exeErrorDiag": "",
[2025-06-04 22:16:12]     "pilotErrorCode": 0,
[2025-06-04 22:16:12]     "pilotErrorDiag": "",
[2025-06-04 22:16:12]  *** Listing of results directory ***
[2025-06-04 22:16:12] total 392564
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc    495897 Jun  3 22:49 pilot3.tar.gz
[2025-06-04 22:16:12] -rwx------. 1 boinc boinc     37140 Jun  3 22:52 runpilot2-wrapper.sh
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc      5111 Jun  3 22:52 queuedata.json
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc       100 Jun  4 15:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 22:16:12] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 15:22 run_atlas
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc       105 Jun  4 15:22 job.xml
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc      6392 Jun  4 15:22 init_data.xml
[2025-06-04 22:16:12] -rw-r--r--. 2 boinc boinc 215561009 Jun  4 15:22 EVNT.45006593._001820.pool.root.1
[2025-06-04 22:16:12] -rw-r--r--. 2 boinc boinc     15093 Jun  4 15:22 start_atlas.sh
[2025-06-04 22:16:12] drwxrwx--x. 2 boinc boinc        68 Jun  4 15:22 shared
[2025-06-04 22:16:12] -rw-r--r--. 2 boinc boinc    508881 Jun  4 15:22 input.tar.gz
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc         0 Jun  4 15:22 boinc_lockfile
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc      2525 Jun  4 15:53 pandaJob.out
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc    986819 Jun  4 15:56 agis_schedconf.cvmfs.json
[2025-06-04 22:16:12] drwx------. 4 boinc boinc      4096 Jun  4 15:56 pilot3
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc 179410917 Jun  4 19:48 HITS.45006595._045382.pool.root.1
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc       531 Jun  4 19:48 boinc_task_state.xml
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc      1020 Jun  4 19:49 memory_monitor_summary.json
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc   1598969 Jun  4 19:49 agis_ddmendpoints.agis.ALL.json
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc    395909 Jun  4 19:49 log.45006595._045382.job.log.tgz.1
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc        95 Jun  4 19:50 pilot_heartbeat.json
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc      7695 Jun  4 19:50 heartbeat.json
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc      4924 Jun  4 19:50 pilotlog.txt
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc   1199668 Jun  4 19:50 log.45006595._045382.job.log.1
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc       357 Jun  4 19:50 output.list
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc       620 Jun  4 19:50 runtime_log
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc   1617920 Jun  4 19:50 result.tar.gz
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc      8659 Jun  4 19:50 runtime_log.err
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc       657 Jun  4 19:50 cE6LDmxnng7n9Rq4apOajLDm4fhM0noT9bVof3QYDmLwZKDmTfpNDn.diag
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc      8192 Jun  4 22:16 boinc_mmap_file
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc        28 Jun  4 22:16 wrapper_checkpoint.txt
[2025-06-04 22:16:12] -rw-r--r--. 1 boinc boinc     20624 Jun  4 22:16 stderr.txt
[2025-06-04 22:16:12] HITS file was successfully produced:
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc 179410917 Jun  4 19:48 shared/HITS.pool.root.1
[2025-06-04 22:16:12]  *** Contents of shared directory: ***
[2025-06-04 22:16:12] total 387816
[2025-06-04 22:16:12] -rw-r--r--. 2 boinc boinc 215561009 Jun  4 15:22 ATLAS.root_0
[2025-06-04 22:16:12] -rw-r--r--. 2 boinc boinc     15093 Jun  4 15:22 start_atlas.sh
[2025-06-04 22:16:12] -rw-r--r--. 2 boinc boinc    508881 Jun  4 15:22 input.tar.gz
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc 179410917 Jun  4 19:48 HITS.pool.root.1
[2025-06-04 22:16:12] -rw-------. 1 boinc boinc   1617920 Jun  4 19:50 result.tar.gz
22:16:14 (29327): run_atlas exited; CPU time 50064.284686
22:16:14 (29327): called boinc_finish(0)

</stderr_txt>
]]>

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