Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
13:47:38 (759833): wrapper (7.7.26015): starting
13:47:38 (759833): wrapper: running run_atlas (--nthreads 3)
[2025-06-04 13:47:38] Arguments: --nthreads 3
[2025-06-04 13:47:38] Threads: 3
[2025-06-04 13:47:38] Checking for CVMFS
[2025-06-04 13:47:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:47:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:47:38] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:47:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:47:38] 2.9.2.0 8891 2498 68312 146779 1 55 32610313 36864001 0 130560 0 2011167 99.991 603823 49849 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 13:47:38] CVMFS is ok
[2025-06-04 13:47:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 13:47:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 13:47:38] Further information can be found at the LHC@home message board.
[2025-06-04 13:47:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:47:38] Checking for apptainer binary...
[2025-06-04 13:47:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:47:38] Running /usr/bin/apptainer --version
[2025-06-04 13:47:38] apptainer version 1.3.6-6.1
[2025-06-04 13:47:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:47:38] atlasA223a
[2025-06-04 13:47:38] apptainer works
[2025-06-04 13:47:38] Set ATHENA_PROC_NUMBER=3
[2025-06-04 13:47:38] Set ATHENA_CORE_NUMBER=3
[2025-06-04 13:47:38] Starting ATLAS job with PandaID=6677977880
[2025-06-04 13:47:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 15:11:26]  *** The last 200 lines of the pilot log: ***
[2025-06-04 15:11:26]  mtime=0
[2025-06-04 15:11:26]  protocol_id=None
[2025-06-04 15:11:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 15:11:26]  replicas=None
[2025-06-04 15:11:26]  scope=mc23_13p6TeV
[2025-06-04 15:11:26]  status=None
[2025-06-04 15:11:26]  status_code=0
[2025-06-04 15:11:26]  storage_token=
[2025-06-04 15:11:26]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6677977880/log.45006595._043610.job.log.tgz.1
[2025-06-04 15:11:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/31/log.45006595._043610.job.log.tgz.1
[2025-06-04 15:11:26]  workdir=None
[2025-06-04 15:11:26] ]
[2025-06-04 15:11:26] 2025-06-04 13:10:58,224 | INFO     | transferring file log.45006595._043610.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6677977880/log.45006595._043610.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 15:11:26] 2025-06-04 13:10:58,224 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6677977880/log.45006595._043610.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0436
[2025-06-04 15:11:26] 2025-06-04 13:10:58,237 | INFO     | adding to output.list: log.45006595._043610.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/31/log.45006595._043610.job.log.tg
[2025-06-04 15:11:26] 2025-06-04 13:10:58,237 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 15:11:26] 2025-06-04 13:10:58,237 | INFO     | summary of transferred files:
[2025-06-04 15:11:26] 2025-06-04 13:10:58,237 | INFO     |  -- lfn=log.45006595._043610.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 15:11:26] 2025-06-04 13:10:58,237 | INFO     | stage-out finished correctly
[2025-06-04 15:11:26] 2025-06-04 13:10:59,707 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 15:11:26] 2025-06-04 13:10:59,777 | WARNING  | process 769983 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 15:11:26] 2025-06-04 13:10:59,777 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6677977880/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 15:11:26] 2025-06-04 13:10:59,812 | INFO     | number of running child processes to parent process 769983: 1
[2025-06-04 15:11:26] 2025-06-04 13:10:59,813 | INFO     | maximum number of monitored processes: 6
[2025-06-04 15:11:26] 2025-06-04 13:11:01,436 | INFO     | job 6677977880 has state=finished
[2025-06-04 15:11:26] 2025-06-04 13:11:01,437 | INFO     | preparing for final server update for job 6677977880 in state='finished'
[2025-06-04 15:11:26] 2025-06-04 13:11:01,437 | INFO     | this job has now completed (state=finished)
[2025-06-04 15:11:26] 2025-06-04 13:11:01,438 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 15:11:26] 2025-06-04 13:11:01,438 | INFO     | log transfer has been attempted: DONE
[2025-06-04 15:11:26] 2025-06-04 13:11:01,438 | INFO     | job 6677977880 has finished - writing final server update
[2025-06-04 15:11:26] 2025-06-04 13:11:01,439 | INFO     | total number of processed events: 400 (read)
[2025-06-04 15:11:26] 2025-06-04 13:11:01,442 | INFO     | executing command: lscpu
[2025-06-04 15:11:26] 2025-06-04 13:11:01,459 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 15:11:26] 2025-06-04 13:11:02,316 | INFO     | monitor loop #384: job 0:6677977880 is in state 'finished'
[2025-06-04 15:11:26] 2025-06-04 13:11:02,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 15:11:26] 2025-06-04 13:11:04,817 | INFO     | monitor loop #385: job 0:6677977880 is in state 'finished'
[2025-06-04 15:11:26] 2025-06-04 13:11:04,817 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 15:11:26] 2025-06-04 13:11:05,281 | INFO     | PID=763480 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 15:11:26] 2025-06-04 13:11:07,320 | INFO     | monitor loop #386: job 0:6677977880 is in state 'finished'
[2025-06-04 15:11:26] 2025-06-04 13:11:07,321 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 15:11:26] 2025-06-04 13:11:07,602 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 15:11:26] 2025-06-04 13:11:07,602 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6677977880/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 15:11:26] 2025-06-04 13:11:07,603 | INFO     | extracted standard info from prmon json
[2025-06-04 15:11:26] 2025-06-04 13:11:07,603 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 15:11:26] 2025-06-04 13:11:07,603 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 15:11:26] 2025-06-04 13:11:07,603 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 15:11:26] 2025-06-04 13:11:07,603 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | fitting pss+swap vs Time
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | sum of square deviations: 130793150.0
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | sum of deviations: -9374049523.0
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | mean x: 1749040257.0
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | mean y: 2423585.7466666666
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | -- intersect: 125357535736.79318
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | intersect: 125357535736.79318
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | chi2: 0.09998129304084813
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | -- intersect: 125357535736.79318
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | current memory leak: -71.67 B/s (using 75 data points, chi2=0.10)
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | ..............................
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | . Timing measurements:
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | . get job = 0 s
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | . initial setup = 1 s
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | . payload setup = 7 s
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | . stage-in = 0 s
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | . payload execution = 4963 s
[2025-06-04 15:11:26] 2025-06-04 13:11:07,604 | INFO     | . stage-out = 0 s
[2025-06-04 15:11:26] 2025-06-04 13:11:07,605 | INFO     | . log creation = 0 s
[2025-06-04 15:11:26] 2025-06-04 13:11:07,605 | INFO     | ..............................
[2025-06-04 15:11:26] 2025-06-04 13:11:07,635 | INFO     | 
[2025-06-04 15:11:26] 2025-06-04 13:11:07,635 | INFO     | job summary report
[2025-06-04 15:11:26] 2025-06-04 13:11:07,635 | INFO     | --------------------------------------------------
[2025-06-04 15:11:26] 2025-06-04 13:11:07,635 | INFO     | PanDA job id: 6677977880
[2025-06-04 15:11:26] 2025-06-04 13:11:07,635 | INFO     | task id: 45006595
[2025-06-04 15:11:26] 2025-06-04 13:11:07,635 | INFO     | errors: (none)
[2025-06-04 15:11:26] 2025-06-04 13:11:07,635 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 15:11:26] 2025-06-04 13:11:07,635 | INFO     | pilot state: finished 
[2025-06-04 15:11:26] 2025-06-04 13:11:07,635 | INFO     | transexitcode: 0
[2025-06-04 15:11:26] 2025-06-04 13:11:07,635 | INFO     | exeerrorcode: 0
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | exeerrordiag: 
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | exitcode: 0
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | exitmsg: OK
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | cpuconsumptiontime: 14194 s
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | nevents: 400
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | neventsw: 0
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | pid: 769983
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | pgrp: 769983
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | corecount: 3
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | event service: False
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | sizes: {0: 2397174, 1: 2397373, 7: 2397579, 11: 2397607, 4975: 2432810, 4976: 2432810, 4984: 2433108}
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | --------------------------------------------------
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | 
[2025-06-04 15:11:26] 2025-06-04 13:11:07,636 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 15:11:26] 2025-06-04 13:11:07,648 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,648 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,648 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,648 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,648 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,648 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,648 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,648 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,648 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,648 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,648 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,648 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,649 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,649 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,649 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,649 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,649 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,649 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 15:11:26] 2025-06-04 13:11:07,649 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,649 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 15:11:26] 2025-06-04 13:11:07,649 | INFO     | job 6677977880 has completed (purged errors)
[2025-06-04 15:11:26] 2025-06-04 13:11:07,649 | INFO     | overall cleanup function is called
[2025-06-04 15:11:26] 2025-06-04 13:11:08,655 | INFO     | --- collectZombieJob: --- 10, [769983]
[2025-06-04 15:11:26] 2025-06-04 13:11:08,656 | INFO     | zombie collector waiting for pid 769983
[2025-06-04 15:11:26] 2025-06-04 13:11:08,656 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 15:11:26] 2025-06-04 13:11:08,656 | INFO     | collected zombie processes
[2025-06-04 15:11:26] 2025-06-04 13:11:08,656 | INFO     | will attempt to kill all subprocesses of pid=769983
[2025-06-04 15:11:26] 2025-06-04 13:11:08,698 | INFO     | process IDs to be killed: [769983] (in reverse order)
[2025-06-04 15:11:26] 2025-06-04 13:11:08,724 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 15:11:26] 2025-06-04 13:11:08,724 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 15:11:26] 2025-06-04 13:11:08,725 | INFO     | did not find any defunct processes belonging to 769983
[2025-06-04 15:11:26] 2025-06-04 13:11:08,726 | INFO     | did not find any defunct processes belonging to 769983
[2025-06-04 15:11:26] 2025-06-04 13:11:08,726 | INFO     | ready for new job
[2025-06-04 15:11:26] 2025-06-04 13:11:08,727 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 15:11:26] 2025-06-04 13:11:08,727 | INFO     | **************************************
[2025-06-04 15:11:26] 2025-06-04 13:11:08,727 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 15:11:26] 2025-06-04 13:11:08,727 | INFO     | **************************************
[2025-06-04 15:11:26] 2025-06-04 13:11:08,727 | INFO     | 
[2025-06-04 15:11:26] 2025-06-04 13:11:08,728 | INFO     | architecture information:
[2025-06-04 15:11:26] 2025-06-04 13:11:08,728 | INFO     | executing command: cat /etc/os-release
[2025-06-04 15:11:26] 2025-06-04 13:11:08,738 | INFO     | cat /etc/os-release:
[2025-06-04 15:11:26] NAME="CentOS Linux"
[2025-06-04 15:11:26] VERSION="7 (Core)"
[2025-06-04 15:11:26] ID="centos"
[2025-06-04 15:11:26] ID_LIKE="rhel fedora"
[2025-06-04 15:11:26] VERSION_ID="7"
[2025-06-04 15:11:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 15:11:26] ANSI_COLOR="0;31"
[2025-06-04 15:11:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 15:11:26] HOME_URL="https://www.centos.org/"
[2025-06-04 15:11:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 15:11:26] 
[2025-06-04 15:11:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 15:11:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 15:11:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 15:11:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 15:11:26] 
[2025-06-04 15:11:26] 2025-06-04 13:11:08,738 | INFO     | **************************************
[2025-06-04 15:11:26] 2025-06-04 13:11:09,242 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 15:11:26] 2025-06-04 13:11:09,278 | INFO     | sufficient remaining disk space (322822995968 B)
[2025-06-04 15:11:26] 2025-06-04 13:11:09,279 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 15:11:26] 2025-06-04 13:11:09,279 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 15:11:26] 2025-06-04 13:11:09,280 | INFO     | update_server=False
[2025-06-04 15:11:26] 2025-06-04 13:11:09,280 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 15:11:26] 2025-06-04 13:11:09,280 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:11:26] 2025-06-04 13:11:09,281 | INFO     | aborting loop
[2025-06-04 15:11:26] 2025-06-04 13:11:09,281 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:11:26] 2025-06-04 13:11:09,281 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 15:11:26] 2025-06-04 13:11:09,292 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 15:11:26] 2025-06-04 13:11:09,293 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 15:11:26] 2025-06-04 13:11:09,293 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 15:11:26] 2025-06-04 13:11:09,799 | INFO     | all data control threads have been joined
[2025-06-04 15:11:26] 2025-06-04 13:11:09,952 | INFO     | all payload control threads have been joined
[2025-06-04 15:11:26] 2025-06-04 13:11:10,251 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 15:11:26] 2025-06-04 13:11:10,286 | INFO     | [job] retrieve thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:10,286 | INFO     | [job] job monitor thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:10,287 | INFO     | [job] queue monitor thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:10,430 | INFO     | [data] copytool_in thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:10,563 | INFO     | all job control threads have been joined
[2025-06-04 15:11:26] 2025-06-04 13:11:10,751 | INFO     | [payload] failed_post thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:10,805 | INFO     | [data] control thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:10,941 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:10,958 | INFO     | [payload] control thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:11,288 | INFO     | [data] copytool_out thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:11,554 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:11,569 | INFO     | [job] control thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:11,590 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:11,607 | INFO     | [job] validate thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:11,773 | INFO     | [payload] validate_post thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:14,258 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:19,925 | INFO     | job.realtimelogging is not enabled
[2025-06-04 15:11:26] 2025-06-04 13:11:20,931 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 15:11:26] 2025-06-04 13:11:21,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140523121059648)>', '<ExcThread(monitor, started 140522396051200)>']
[2025-06-04 15:11:26] 2025-06-04 13:11:21,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 15:11:26] 2025-06-04 13:11:21,357 | INFO     | [monitor] control thread has ended
[2025-06-04 15:11:26] 2025-06-04 13:11:26,243 | INFO     | all workflow threads have been joined
[2025-06-04 15:11:26] 2025-06-04 13:11:26,243 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 15:11:26] 2025-06-04 13:11:26,244 | INFO     | traces error code: 0
[2025-06-04 15:11:26] 2025-06-04 13:11:26,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 15:11:26] 2025-06-04 13:11:26,294 [wrapper] ==== pilot stdout END ====
[2025-06-04 15:11:26] 2025-06-04 13:11:26,296 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 15:11:26] 2025-06-04 13:11:26,299 [wrapper] pilotpid: 763480
[2025-06-04 15:11:26] 2025-06-04 13:11:26,302 [wrapper] Pilot exit status: 0
[2025-06-04 15:11:26] 2025-06-04 13:11:26,310 [wrapper] pandaids: 6677977880
[2025-06-04 15:11:26] 2025-06-04 13:11:26,327 [wrapper] cleanup supervisor_pilot  782200 763481
[2025-06-04 15:11:26] 2025-06-04 13:11:26,329 [wrapper] Test setup, not cleaning
[2025-06-04 15:11:26] 2025-06-04 13:11:26,332 [wrapper] apfmon messages muted
[2025-06-04 15:11:26] 2025-06-04 13:11:26,334 [wrapper] ==== wrapper stdout END ====
[2025-06-04 15:11:26] 2025-06-04 13:11:26,337 [wrapper] ==== wrapper stderr END ====
[2025-06-04 15:11:26]  *** Error codes and diagnostics ***
[2025-06-04 15:11:26]     "exeErrorCode": 0,
[2025-06-04 15:11:26]     "exeErrorDiag": "",
[2025-06-04 15:11:26]     "pilotErrorCode": 0,
[2025-06-04 15:11:26]     "pilotErrorDiag": "",
[2025-06-04 15:11:26]  *** Listing of results directory ***
[2025-06-04 15:11:26] total 392208
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc    495897 Jun  3 20:57 pilot3.tar.gz
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc      5111 Jun  3 21:16 queuedata.json
[2025-06-04 15:11:26] -rwx------ 1 boinc boinc     37140 Jun  3 21:18 runpilot2-wrapper.sh
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc       100 Jun  4 13:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 15:11:26] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 13:47 run_atlas
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc       105 Jun  4 13:47 job.xml
[2025-06-04 15:11:26] -rw-r--r-- 2 boinc boinc 216037154 Jun  4 13:47 EVNT.45006593._001748.pool.root.1
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc      6683 Jun  4 13:47 init_data.xml
[2025-06-04 15:11:26] drwxrwx--x 2 boinc boinc      4096 Jun  4 13:47 shared
[2025-06-04 15:11:26] -rw-r--r-- 2 boinc boinc    508885 Jun  4 13:47 input.tar.gz
[2025-06-04 15:11:26] -rw-r--r-- 2 boinc boinc     15093 Jun  4 13:47 start_atlas.sh
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc         0 Jun  4 13:47 boinc_lockfile
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc      2525 Jun  4 13:47 pandaJob.out
[2025-06-04 15:11:26] -rw------- 1 boinc boinc    986812 Jun  4 13:47 agis_schedconf.cvmfs.json
[2025-06-04 15:11:26] -rw------- 1 boinc boinc   1598969 Jun  4 13:47 agis_ddmendpoints.agis.ALL.json
[2025-06-04 15:11:26] drwx------ 4 boinc boinc      4096 Jun  4 13:47 pilot3
[2025-06-04 15:11:26] -rw------- 1 boinc boinc        95 Jun  4 15:10 pilot_heartbeat.json
[2025-06-04 15:11:26] -rw------- 1 boinc boinc 180329775 Jun  4 15:10 HITS.45006595._043610.pool.root.1
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc       529 Jun  4 15:10 boinc_task_state.xml
[2025-06-04 15:11:26] -rw------- 1 boinc boinc      1017 Jun  4 15:10 memory_monitor_summary.json
[2025-06-04 15:11:26] -rw------- 1 boinc boinc    229340 Jun  4 15:10 log.45006595._043610.job.log.tgz.1
[2025-06-04 15:11:26] -rw------- 1 boinc boinc      7676 Jun  4 15:11 heartbeat.json
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc      8192 Jun  4 15:11 boinc_mmap_file
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc        27 Jun  4 15:11 wrapper_checkpoint.txt
[2025-06-04 15:11:26] -rw------- 1 boinc boinc      4429 Jun  4 15:11 pilotlog.txt
[2025-06-04 15:11:26] -rw------- 1 boinc boinc    484274 Jun  4 15:11 log.45006595._043610.job.log.1
[2025-06-04 15:11:26] -rw------- 1 boinc boinc       357 Jun  4 15:11 output.list
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc       620 Jun  4 15:11 runtime_log
[2025-06-04 15:11:26] -rw------- 1 boinc boinc    727040 Jun  4 15:11 result.tar.gz
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc      8753 Jun  4 15:11 runtime_log.err
[2025-06-04 15:11:26] -rw------- 1 boinc boinc       662 Jun  4 15:11 bidNDmSKmg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmKkZKDmg3D1em.diag
[2025-06-04 15:11:26] -rw-r--r-- 1 boinc boinc     21715 Jun  4 15:11 stderr.txt
[2025-06-04 15:11:26] HITS file was successfully produced:
[2025-06-04 15:11:26] -rw------- 1 boinc boinc 180329775 Jun  4 15:10 shared/HITS.pool.root.1
[2025-06-04 15:11:26]  *** Contents of shared directory: ***
[2025-06-04 15:11:26] total 388316
[2025-06-04 15:11:26] -rw-r--r-- 2 boinc boinc 216037154 Jun  4 13:47 ATLAS.root_0
[2025-06-04 15:11:26] -rw-r--r-- 2 boinc boinc    508885 Jun  4 13:47 input.tar.gz
[2025-06-04 15:11:26] -rw-r--r-- 2 boinc boinc     15093 Jun  4 13:47 start_atlas.sh
[2025-06-04 15:11:26] -rw------- 1 boinc boinc 180329775 Jun  4 15:10 HITS.pool.root.1
[2025-06-04 15:11:26] -rw------- 1 boinc boinc    727040 Jun  4 15:11 result.tar.gz
15:11:28 (759833): run_atlas exited; CPU time 14218.410553
15:11:28 (759833): called boinc_finish(0)

</stderr_txt>
]]>

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