Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:03:09 (8552): wrapper (7.7.26015): starting
18:03:09 (8552): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 18:03:09] Arguments: --nthreads 8
[2025-06-04 18:03:09] Threads: 8
[2025-06-04 18:03:09] Checking for CVMFS
[2025-06-04 18:03:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 18:03:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 18:03:10] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 18:03:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 18:03:12] 2.11.2.0 29611 33411 96044 146786 2 159 17469065 25165825 4019 130560 0 16869047 99.823 19440429 2209 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 18:03:12] CVMFS is ok
[2025-06-04 18:03:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 18:03:12] Checking for apptainer binary...
[2025-06-04 18:03:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 18:03:12] Running /usr/bin/apptainer --version
[2025-06-04 18:03:12] apptainer version 1.3.2-1.el7
[2025-06-04 18:03:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 18:03:13] cg-vwn406.simple-grid.lan
[2025-06-04 18:03:13] apptainer works
[2025-06-04 18:03:13] Set ATHENA_PROC_NUMBER=8
[2025-06-04 18:03:13] Set ATHENA_CORE_NUMBER=8
[2025-06-04 18:03:13] Starting ATLAS job with PandaID=6677976133
[2025-06-04 18:03:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 22:34:35]  *** The last 200 lines of the pilot log: ***
[2025-06-04 22:34:35] 2025-06-04 19:56:43,202 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 22:34:35] 2025-06-04 19:56:43,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 22:34:35] 2025-06-04 19:56:43,203 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 22:34:35] 2025-06-04 19:56:43,203 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 22:34:35] 2025-06-04 19:56:43,208 | INFO     | fitting pss+swap vs Time
[2025-06-04 22:34:35] 2025-06-04 19:56:43,209 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,211 | INFO     | sum of deviations: 33927208811.000004
[2025-06-04 22:34:35] 2025-06-04 19:56:43,211 | INFO     | mean x: 1749059967.0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,212 | INFO     | mean y: 2455975.4669603524
[2025-06-04 22:34:35] 2025-06-04 19:56:43,212 | INFO     | -- intersect: -16358371463.18997
[2025-06-04 22:34:35] 2025-06-04 19:56:43,212 | INFO     | intersect: -16358371463.18997
[2025-06-04 22:34:35] 2025-06-04 19:56:43,212 | INFO     | chi2: 2.2758125007672607
[2025-06-04 22:34:35] 2025-06-04 19:56:43,213 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 22:34:35] 2025-06-04 19:56:43,215 | INFO     | sum of deviations: 47952934663.0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,215 | INFO     | mean x: 1749059814.5
[2025-06-04 22:34:35] 2025-06-04 19:56:43,215 | INFO     | mean y: 2464925.0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,215 | INFO     | -- intersect: -24719974260.341667
[2025-06-04 22:34:35] 2025-06-04 19:56:43,215 | INFO     | intersect: -24719974260.341667
[2025-06-04 22:34:35] 2025-06-04 19:56:43,216 | INFO     | chi2: 1.497659988076155
[2025-06-04 22:34:35] 2025-06-04 19:56:43,216 | INFO     | current chi2=1.497659988076155 (change=34.19229450707216 %)
[2025-06-04 22:34:35] 2025-06-04 19:56:43,216 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,218 | INFO     | sum of deviations: 46719141282.0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,218 | INFO     | mean x: 1749059662.0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,218 | INFO     | mean y: 2464085.271889401
[2025-06-04 22:34:35] 2025-06-04 19:56:43,219 | INFO     | -- intersect: -25787519931.545567
[2025-06-04 22:34:35] 2025-06-04 19:56:43,219 | INFO     | intersect: -25787519931.545567
[2025-06-04 22:34:35] 2025-06-04 19:56:43,219 | INFO     | chi2: 1.497753369462564
[2025-06-04 22:34:35] 2025-06-04 19:56:43,219 | INFO     | current chi2=1.497753369462564 (change=-0.0062351526482972985 %)
[2025-06-04 22:34:35] 2025-06-04 19:56:43,219 | INFO     | right removable region: 216
[2025-06-04 22:34:35] 2025-06-04 19:56:43,220 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 22:34:35] 2025-06-04 19:56:43,222 | INFO     | sum of deviations: -2435643044.5
[2025-06-04 22:34:35] 2025-06-04 19:56:43,222 | INFO     | mean x: 1749060119.5
[2025-06-04 22:34:35] 2025-06-04 19:56:43,222 | INFO     | mean y: 2479413.572072072
[2025-06-04 22:34:35] 2025-06-04 19:56:43,222 | INFO     | -- intersect: 1258190830.783311
[2025-06-04 22:34:35] 2025-06-04 19:56:43,222 | INFO     | intersect: 1258190830.783311
[2025-06-04 22:34:35] 2025-06-04 19:56:43,223 | INFO     | chi2: 0.7986348758563552
[2025-06-04 22:34:35] 2025-06-04 19:56:43,223 | INFO     | current chi2=0.7986348758563552 (change=64.90770326698241 %)
[2025-06-04 22:34:35] 2025-06-04 19:56:43,223 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,225 | INFO     | sum of deviations: -3472736588.0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,232 | INFO     | mean x: 1749060272.0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,233 | INFO     | mean y: 2480113.6221198156
[2025-06-04 22:34:35] 2025-06-04 19:56:43,233 | INFO     | -- intersect: 1919507051.1253471
[2025-06-04 22:34:35] 2025-06-04 19:56:43,233 | INFO     | intersect: 1919507051.1253471
[2025-06-04 22:34:35] 2025-06-04 19:56:43,233 | INFO     | chi2: 0.7982500733491699
[2025-06-04 22:34:35] 2025-06-04 19:56:43,234 | INFO     | current chi2=0.7982500733491699 (change=0.04818253232088037 %)
[2025-06-04 22:34:35] 2025-06-04 19:56:43,234 | INFO     | left removable region: 20
[2025-06-04 22:34:35] 2025-06-04 19:56:43,234 | INFO     | sum of square deviations: 2334722845.0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,235 | INFO     | sum of deviations: 7462110053.0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,236 | INFO     | mean x: 1749060241.5
[2025-06-04 22:34:35] 2025-06-04 19:56:43,236 | INFO     | mean y: 2492022.7959183673
[2025-06-04 22:34:35] 2025-06-04 19:56:43,236 | INFO     | -- intersect: -5587756104.235947
[2025-06-04 22:34:35] 2025-06-04 19:56:43,236 | INFO     | intersect: -5587756104.235947
[2025-06-04 22:34:35] 2025-06-04 19:56:43,236 | INFO     | chi2: 0.0011948230853169293
[2025-06-04 22:34:35] 2025-06-04 19:56:43,237 | INFO     | -- intersect: -5587756104.235947
[2025-06-04 22:34:35] 2025-06-04 19:56:43,237 | INFO     | current memory leak: 3.20 B/s (using 196 data points, chi2=0.00)
[2025-06-04 22:34:35] 2025-06-04 19:56:43,238 | INFO     | ..............................
[2025-06-04 22:34:35] 2025-06-04 19:56:43,238 | INFO     | . Timing measurements:
[2025-06-04 22:34:35] 2025-06-04 19:56:43,238 | INFO     | . get job = 0 s
[2025-06-04 22:34:35] 2025-06-04 19:56:43,238 | INFO     | . initial setup = 2 s
[2025-06-04 22:34:35] 2025-06-04 19:56:43,238 | INFO     | . payload setup = 13 s
[2025-06-04 22:34:35] 2025-06-04 19:56:43,238 | INFO     | . stage-in = 0 s
[2025-06-04 22:34:35] 2025-06-04 19:56:43,238 | INFO     | . payload execution = 13853 s
[2025-06-04 22:34:35] 2025-06-04 19:56:43,238 | INFO     | . stage-out = 4 s
[2025-06-04 22:34:35] 2025-06-04 19:56:43,238 | INFO     | . log creation = 1 s
[2025-06-04 22:34:35] 2025-06-04 19:56:43,239 | INFO     | ..............................
[2025-06-04 22:34:35] 2025-06-04 19:56:43,411 | INFO     | 
[2025-06-04 22:34:35] 2025-06-04 19:56:43,411 | INFO     | job summary report
[2025-06-04 22:34:35] 2025-06-04 19:56:43,412 | INFO     | --------------------------------------------------
[2025-06-04 22:34:35] 2025-06-04 19:56:43,412 | INFO     | PanDA job id: 6677976133
[2025-06-04 22:34:35] 2025-06-04 19:56:43,412 | INFO     | task id: 45006595
[2025-06-04 22:34:35] 2025-06-04 19:56:43,412 | INFO     | errors: (none)
[2025-06-04 22:34:35] 2025-06-04 19:56:43,412 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 22:34:35] 2025-06-04 19:56:43,412 | INFO     | pilot state: finished 
[2025-06-04 22:34:35] 2025-06-04 19:56:43,412 | INFO     | transexitcode: 0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,412 | INFO     | exeerrorcode: 0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,412 | INFO     | exeerrordiag: 
[2025-06-04 22:34:35] 2025-06-04 19:56:43,412 | INFO     | exitcode: 0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,412 | INFO     | exitmsg: OK
[2025-06-04 22:34:35] 2025-06-04 19:56:43,413 | INFO     | cpuconsumptiontime: 51206 s
[2025-06-04 22:34:35] 2025-06-04 19:56:43,413 | INFO     | nevents: 400
[2025-06-04 22:34:35] 2025-06-04 19:56:43,413 | INFO     | neventsw: 0
[2025-06-04 22:34:35] 2025-06-04 19:56:43,413 | INFO     | pid: 22773
[2025-06-04 22:34:35] 2025-06-04 19:56:43,413 | INFO     | pgrp: 22773
[2025-06-04 22:34:35] 2025-06-04 19:56:43,413 | INFO     | corecount: 8
[2025-06-04 22:34:35] 2025-06-04 19:56:43,413 | INFO     | event service: False
[2025-06-04 22:34:35] 2025-06-04 19:56:43,413 | INFO     | sizes: {0: 2396514, 1: 2397370, 2: 2397370, 11: 2397604, 13: 2397632, 13871: 2427567, 13876: 2436564, 13963: 2436678}
[2025-06-04 22:34:35] 2025-06-04 19:56:43,413 | INFO     | --------------------------------------------------
[2025-06-04 22:34:35] 2025-06-04 19:56:43,413 | INFO     | 
[2025-06-04 22:34:35] 2025-06-04 19:56:43,413 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-06-04 22:34:35] 2025-06-04 19:56:43,918 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,918 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,918 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,919 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,919 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,919 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,919 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,919 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,919 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,919 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,919 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,919 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,919 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,920 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,920 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,920 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,920 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,920 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 22:34:35] 2025-06-04 19:56:43,920 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,920 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 22:34:35] 2025-06-04 19:56:43,920 | INFO     | job 6677976133 has completed (purged errors)
[2025-06-04 22:34:35] 2025-06-04 19:56:43,921 | INFO     | overall cleanup function is called
[2025-06-04 22:34:35] 2025-06-04 19:56:44,863 | INFO     | PID=12241 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 22:34:35] 2025-06-04 19:56:44,863 | INFO     | .. there are 9 such processes running
[2025-06-04 22:34:35] 2025-06-04 19:56:44,928 | INFO     | --- collectZombieJob: --- 10, [22773]
[2025-06-04 22:34:35] 2025-06-04 19:56:44,929 | INFO     | zombie collector waiting for pid 22773
[2025-06-04 22:34:35] 2025-06-04 19:56:44,929 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 22:34:35] 2025-06-04 19:56:44,929 | INFO     | collected zombie processes
[2025-06-04 22:34:35] 2025-06-04 19:56:44,929 | INFO     | will attempt to kill all subprocesses of pid=22773
[2025-06-04 22:34:35] 2025-06-04 19:56:45,055 | INFO     | process IDs to be killed: [22773] (in reverse order)
[2025-06-04 22:34:35] 2025-06-04 19:56:45,617 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 22:34:35] 2025-06-04 19:56:45,618 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 22:34:35] 2025-06-04 19:56:45,628 | INFO     | did not find any defunct processes belonging to 22773
[2025-06-04 22:34:35] 2025-06-04 19:56:45,632 | INFO     | did not find any defunct processes belonging to 22773
[2025-06-04 22:34:35] 2025-06-04 19:56:45,632 | INFO     | ready for new job
[2025-06-04 22:34:35] 2025-06-04 19:56:45,637 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 22:34:35] 2025-06-04 19:56:45,640 | INFO     | **************************************
[2025-06-04 22:34:35] 2025-06-04 19:56:45,640 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 22:34:35] 2025-06-04 19:56:45,640 | INFO     | **************************************
[2025-06-04 22:34:35] 2025-06-04 19:56:45,640 | INFO     | 
[2025-06-04 22:34:35] 2025-06-04 19:56:45,641 | INFO     | pilot is running in a VM
[2025-06-04 22:34:35] 2025-06-04 19:56:45,641 | INFO     | architecture information:
[2025-06-04 22:34:35] 2025-06-04 19:56:45,652 | INFO     | executing command: cat /etc/os-release
[2025-06-04 22:34:35] 2025-06-04 19:56:45,881 | INFO     | cat /etc/os-release:
[2025-06-04 22:34:35] NAME="CentOS Linux"
[2025-06-04 22:34:35] VERSION="7 (Core)"
[2025-06-04 22:34:35] ID="centos"
[2025-06-04 22:34:35] ID_LIKE="rhel fedora"
[2025-06-04 22:34:35] VERSION_ID="7"
[2025-06-04 22:34:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 22:34:35] ANSI_COLOR="0;31"
[2025-06-04 22:34:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 22:34:35] HOME_URL="https://www.centos.org/"
[2025-06-04 22:34:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 22:34:35] 
[2025-06-04 22:34:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 22:34:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 22:34:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 22:34:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 22:34:35] 
[2025-06-04 22:34:35] 2025-06-04 19:56:45,881 | INFO     | **************************************
[2025-06-04 22:34:35] 2025-06-04 19:56:46,385 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-06-04 22:34:35] 2025-06-04 19:56:46,597 | INFO     | sufficient remaining disk space (496740859904 B)
[2025-06-04 22:34:35] 2025-06-04 19:56:46,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 22:34:35] 2025-06-04 19:56:46,597 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 22:34:35] 2025-06-04 19:56:46,597 | INFO     | update_server=False
[2025-06-04 22:34:35] 2025-06-04 19:56:46,597 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 22:34:35] 2025-06-04 19:56:46,871 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 22:34:35] 2025-06-04 19:56:46,871 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 22:34:35] 2025-06-04 19:56:46,871 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 22:34:35] 2025-06-04 19:56:46,895 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 22:34:35] 2025-06-04 19:56:47,241 | INFO     | all payload control threads have been joined
[2025-06-04 22:34:35] 2025-06-04 19:56:47,541 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:34:35] 2025-06-04 19:56:47,542 | INFO     | aborting loop
[2025-06-04 22:34:35] 2025-06-04 19:56:47,604 | INFO     | [job] retrieve thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:47,647 | INFO     | all data control threads have been joined
[2025-06-04 22:34:35] 2025-06-04 19:56:47,834 | INFO     | all job control threads have been joined
[2025-06-04 22:34:35] 2025-06-04 19:56:47,995 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 22:34:35] 2025-06-04 19:56:48,194 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:48,208 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:48,248 | INFO     | [payload] control thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:48,315 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:48,364 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:48,425 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 22:34:35] 2025-06-04 19:56:48,462 | INFO     | [payload] failed_post thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:48,548 | INFO     | [job] job monitor thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:48,608 | INFO     | [job] validate thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:48,654 | INFO     | [data] control thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:48,841 | INFO     | [job] control thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:48,904 | INFO     | [data] copytool_out thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:48,926 | INFO     | [data] copytool_in thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:49,004 | INFO     | [payload] validate_post thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:49,432 | INFO     | [job] queue monitor thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:52,004 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 22:34:35] 2025-06-04 19:56:53,629 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140503668160320)>', '<ExcThread(monitor, started 140502875764480)>']
[2025-06-04 22:34:35] 2025-06-04 19:56:53,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 22:34:35] 2025-06-04 19:56:53,913 | INFO     | [monitor] control thread has ended
[2025-06-04 22:34:35] 2025-06-04 19:56:58,654 | INFO     | all workflow threads have been joined
[2025-06-04 22:34:35] 2025-06-04 19:56:58,655 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 22:34:35] 2025-06-04 19:56:58,655 | INFO     | traces error code: 0
[2025-06-04 22:34:35] 2025-06-04 19:56:58,655 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 22:34:35] 2025-06-04 19:56:58,913 [wrapper] ==== pilot stdout END ====
[2025-06-04 22:34:35] 2025-06-04 19:56:58,919 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 22:34:35] 2025-06-04 19:56:58,923 [wrapper] pilotpid: 12241
[2025-06-04 22:34:35] 2025-06-04 19:56:58,928 [wrapper] Pilot exit status: 0
[2025-06-04 22:34:35] 2025-06-04 19:56:58,964 [wrapper] pandaids: 6677976133
[2025-06-04 22:34:35] 2025-06-04 19:56:59,017 [wrapper] cleanup supervisor_pilot  7013 12242
[2025-06-04 22:34:35] 2025-06-04 19:56:59,026 [wrapper] Test setup, not cleaning
[2025-06-04 22:34:35] 2025-06-04 19:56:59,060 [wrapper] apfmon messages muted
[2025-06-04 22:34:35] 2025-06-04 19:56:59,117 [wrapper] ==== wrapper stdout END ====
[2025-06-04 22:34:35] 2025-06-04 19:56:59,179 [wrapper] ==== wrapper stderr END ====
[2025-06-04 22:34:35]  *** Error codes and diagnostics ***
[2025-06-04 22:34:35]     "exeErrorCode": 0,
[2025-06-04 22:34:35]     "exeErrorDiag": "",
[2025-06-04 22:34:35]     "pilotErrorCode": 0,
[2025-06-04 22:34:35]     "pilotErrorDiag": "",
[2025-06-04 22:34:35]  *** Listing of results directory ***
[2025-06-04 22:34:35] total 397156
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc    495897 Jun  3 20:57 pilot3.tar.gz
[2025-06-04 22:34:35] -rwx------. 1 boinc boinc     37140 Jun  3 21:05 runpilot2-wrapper.sh
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc      5111 Jun  3 21:05 queuedata.json
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc       100 Jun  4 18:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 22:34:35] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 18:03 run_atlas
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc       105 Jun  4 18:03 job.xml
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc      6392 Jun  4 18:03 init_data.xml
[2025-06-04 22:34:35] -rw-r--r--. 2 boinc boinc 215482225 Jun  4 18:03 EVNT.45006593._001728.pool.root.1
[2025-06-04 22:34:35] -rw-r--r--. 2 boinc boinc     15093 Jun  4 18:03 start_atlas.sh
[2025-06-04 22:34:35] drwxrwx--x. 2 boinc boinc        68 Jun  4 18:03 shared
[2025-06-04 22:34:35] -rw-r--r--. 2 boinc boinc    508872 Jun  4 18:03 input.tar.gz
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc         0 Jun  4 18:03 boinc_lockfile
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc      2525 Jun  4 18:03 pandaJob.out
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc    990989 Jun  4 18:03 agis_schedconf.cvmfs.json
[2025-06-04 22:34:35] drwx------. 4 boinc boinc      4096 Jun  4 18:03 pilot3
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc 184187539 Jun  4 21:53 HITS.45006595._043108.pool.root.1
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc       531 Jun  4 21:54 boinc_task_state.xml
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc      1020 Jun  4 21:55 memory_monitor_summary.json
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc   1598969 Jun  4 21:55 agis_ddmendpoints.agis.ALL.json
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc    385539 Jun  4 21:55 log.45006595._043108.job.log.tgz.1
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc        95 Jun  4 21:55 pilot_heartbeat.json
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc      7689 Jun  4 21:56 heartbeat.json
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc      4416 Jun  4 21:56 pilotlog.txt
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc   1213546 Jun  4 21:56 log.45006595._043108.job.log.1
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc       357 Jun  4 21:57 output.list
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc       620 Jun  4 21:57 runtime_log
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc   1617920 Jun  4 21:57 result.tar.gz
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc       657 Jun  4 21:57 U0zLDmO8lg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwplKDmbOXkwm.diag
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc      8659 Jun  4 21:57 runtime_log.err
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc      8192 Jun  4 22:34 boinc_mmap_file
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc        28 Jun  4 22:34 wrapper_checkpoint.txt
[2025-06-04 22:34:35] -rw-r--r--. 1 boinc boinc     20526 Jun  4 22:34 stderr.txt
[2025-06-04 22:34:35] HITS file was successfully produced:
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc 184187539 Jun  4 21:53 shared/HITS.pool.root.1
[2025-06-04 22:34:35]  *** Contents of shared directory: ***
[2025-06-04 22:34:35] total 392400
[2025-06-04 22:34:35] -rw-r--r--. 2 boinc boinc 215482225 Jun  4 18:03 ATLAS.root_0
[2025-06-04 22:34:35] -rw-r--r--. 2 boinc boinc     15093 Jun  4 18:03 start_atlas.sh
[2025-06-04 22:34:35] -rw-r--r--. 2 boinc boinc    508872 Jun  4 18:03 input.tar.gz
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc 184187539 Jun  4 21:53 HITS.pool.root.1
[2025-06-04 22:34:35] -rw-------. 1 boinc boinc   1617920 Jun  4 21:57 result.tar.gz
22:34:37 (8552): run_atlas exited; CPU time 51378.887683
22:34:37 (8552): called boinc_finish(0)

</stderr_txt>
]]>

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