Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:06:44 (24694): wrapper (7.7.26015): starting
21:06:44 (24694): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 21:06:44] Arguments: --nthreads 8
[2025-06-03 21:06:44] Threads: 8
[2025-06-03 21:06:44] Checking for CVMFS
[2025-06-03 21:06:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 21:06:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 21:06:44] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 21:06:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 21:06:44] 2.11.2.0 2827 35000 73664 146762 1 58 18185325 20275200 1 130560 0 11041481 99.976 6325929 7540 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 21:06:44] CVMFS is ok
[2025-06-03 21:06:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 21:06:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 21:06:45] Further information can be found at the LHC@home message board.
[2025-06-03 21:06:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 21:06:45] Checking for apptainer binary...
[2025-06-03 21:06:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 21:06:45] Running /usr/bin/apptainer --version
[2025-06-03 21:06:45] apptainer version 1.3.2-1.el7
[2025-06-03 21:06:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 21:06:46] c-115-13.aglt2.org
[2025-06-03 21:06:46] apptainer works
[2025-06-03 21:06:46] Set ATHENA_PROC_NUMBER=8
[2025-06-03 21:06:46] Set ATHENA_CORE_NUMBER=8
[2025-06-03 21:06:46] Starting ATLAS job with PandaID=6678071454
[2025-06-03 21:06:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:47:36 (30349): wrapper (7.7.26015): starting
21:47:36 (30349): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 21:47:36] Arguments: --nthreads 8
[2025-06-03 21:47:36] Threads: 8
[2025-06-03 21:47:36] This job has been restarted, cleaning up previous attempt
[2025-06-03 21:47:36] Checking for CVMFS
[2025-06-03 21:47:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 21:47:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 21:47:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 21:47:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 21:47:37] 2.11.2.0 2827 35041 74344 146763 0 17 18202512 20275200 1 130560 0 11109338 99.976 6327294 7541 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 21:47:37] CVMFS is ok
[2025-06-03 21:47:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 21:47:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 21:47:37] Further information can be found at the LHC@home message board.
[2025-06-03 21:47:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 21:47:37] Checking for apptainer binary...
[2025-06-03 21:47:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 21:47:37] Running /usr/bin/apptainer --version
[2025-06-03 21:47:37] apptainer version 1.3.2-1.el7
[2025-06-03 21:47:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 21:47:38] c-115-13.aglt2.org
[2025-06-03 21:47:38] apptainer works
[2025-06-03 21:47:38] Set ATHENA_PROC_NUMBER=8
[2025-06-03 21:47:38] Set ATHENA_CORE_NUMBER=8
[2025-06-03 21:47:38] Starting ATLAS job with PandaID=6678071454
[2025-06-03 21:47:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:33:08]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:33:08] 2025-06-04 03:32:46,925 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:33:08] 2025-06-04 03:32:49,427 | INFO     | monitor loop #466: job 0:6678071454 is in state 'finished'
[2025-06-03 23:33:08] 2025-06-04 03:32:49,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 23:33:08] 2025-06-04 03:32:50,037 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-03 23:33:08] 2025-06-04 03:32:50,037 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678071454/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:33:08] 2025-06-04 03:32:50,038 | INFO     | extracted standard info from prmon json
[2025-06-03 23:33:08] 2025-06-04 03:32:50,038 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:33:08] 2025-06-04 03:32:50,039 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:33:08] 2025-06-04 03:32:50,039 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:33:08] 2025-06-04 03:32:50,039 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:33:08] 2025-06-04 03:32:50,042 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:33:08] 2025-06-04 03:32:50,043 | INFO     | sum of square deviations: 338804492.0
[2025-06-03 23:33:08] 2025-06-04 03:32:50,044 | INFO     | sum of deviations: 8050029822.000006
[2025-06-03 23:33:08] 2025-06-04 03:32:50,044 | INFO     | mean x: 1749004817.0
[2025-06-03 23:33:08] 2025-06-04 03:32:50,044 | INFO     | mean y: 2473263.2718446604
[2025-06-03 23:33:08] 2025-06-04 03:32:50,044 | INFO     | -- intersect: -41554062343.91149
[2025-06-03 23:33:08] 2025-06-04 03:32:50,044 | INFO     | intersect: -41554062343.91149
[2025-06-03 23:33:08] 2025-06-04 03:32:50,045 | INFO     | chi2: 1.4780836139318823
[2025-06-03 23:33:08] 2025-06-04 03:32:50,045 | INFO     | sum of square deviations: 291817564.5
[2025-06-03 23:33:08] 2025-06-04 03:32:50,046 | INFO     | sum of deviations: 7607242290.0
[2025-06-03 23:33:08] 2025-06-04 03:32:50,046 | INFO     | mean x: 1749004664.5
[2025-06-03 23:33:08] 2025-06-04 03:32:50,046 | INFO     | mean y: 2471830.9183673467
[2025-06-03 23:33:08] 2025-06-04 03:32:50,046 | INFO     | -- intersect: -45591432949.92857
[2025-06-03 23:33:08] 2025-06-04 03:32:50,047 | INFO     | intersect: -45591432949.92857
[2025-06-03 23:33:08] 2025-06-04 03:32:50,047 | INFO     | chi2: 1.4814065894712802
[2025-06-03 23:33:08] 2025-06-04 03:32:50,047 | INFO     | current chi2=1.4814065894712802 (change=-0.22481647912721645 %)
[2025-06-03 23:33:08] 2025-06-04 03:32:50,047 | INFO     | right removable region: 97
[2025-06-03 23:33:08] 2025-06-04 03:32:50,048 | INFO     | sum of square deviations: 291817564.5
[2025-06-03 23:33:08] 2025-06-04 03:32:50,048 | INFO     | sum of deviations: -6304532146.000001
[2025-06-03 23:33:08] 2025-06-04 03:32:50,048 | INFO     | mean x: 1749004969.5
[2025-06-03 23:33:08] 2025-06-04 03:32:50,049 | INFO     | mean y: 2518736.9183673467
[2025-06-03 23:33:08] 2025-06-04 03:32:50,049 | INFO     | -- intersect: 37788654306.309364
[2025-06-03 23:33:08] 2025-06-04 03:32:50,049 | INFO     | intersect: 37788654306.309364
[2025-06-03 23:33:08] 2025-06-04 03:32:50,049 | INFO     | chi2: 0.07527670584863375
[2025-06-03 23:33:08] 2025-06-04 03:32:50,049 | INFO     | current chi2=0.07527670584863375 (change=94.90714157581462 %)
[2025-06-03 23:33:08] 2025-06-04 03:32:50,049 | INFO     | sum of square deviations: 249388862.0
[2025-06-03 23:33:08] 2025-06-04 03:32:50,050 | INFO     | sum of deviations: -3429992912.000001
[2025-06-03 23:33:08] 2025-06-04 03:32:50,050 | INFO     | mean x: 1749005122.0
[2025-06-03 23:33:08] 2025-06-04 03:32:50,050 | INFO     | mean y: 2508345.1075268816
[2025-06-03 23:33:08] 2025-06-04 03:32:50,050 | INFO     | -- intersect: 24057612985.312737
[2025-06-03 23:33:08] 2025-06-04 03:32:50,050 | INFO     | intersect: 24057612985.312737
[2025-06-03 23:33:08] 2025-06-04 03:32:50,050 | INFO     | chi2: 0.05882147478012264
[2025-06-03 23:33:08] 2025-06-04 03:32:50,051 | INFO     | current chi2=0.05882147478012264 (change=21.85965881875763 %)
[2025-06-03 23:33:08] 2025-06-04 03:32:50,051 | INFO     | left removable region: 20
[2025-06-03 23:33:08] 2025-06-04 03:32:50,051 | INFO     | sum of square deviations: 141539398.0
[2025-06-03 23:33:08] 2025-06-04 03:32:50,051 | INFO     | sum of deviations: 631717220.0000001
[2025-06-03 23:33:08] 2025-06-04 03:32:50,051 | INFO     | mean x: 1749005244.0
[2025-06-03 23:33:08] 2025-06-04 03:32:50,051 | INFO     | mean y: 2490628.5064935065
[2025-06-03 23:33:08] 2025-06-04 03:32:50,052 | INFO     | -- intersect: -7803652015.290126
[2025-06-03 23:33:08] 2025-06-04 03:32:50,052 | INFO     | intersect: -7803652015.290126
[2025-06-03 23:33:08] 2025-06-04 03:32:50,052 | INFO     | chi2: 6.90567961499947e-05
[2025-06-03 23:33:08] 2025-06-04 03:32:50,052 | INFO     | -- intersect: -7803652015.290126
[2025-06-03 23:33:08] 2025-06-04 03:32:50,052 | INFO     | current memory leak: 4.46 B/s (using 77 data points, chi2=0.00)
[2025-06-03 23:33:08] 2025-06-04 03:32:50,053 | INFO     | ..............................
[2025-06-03 23:33:08] 2025-06-04 03:32:50,053 | INFO     | . Timing measurements:
[2025-06-03 23:33:08] 2025-06-04 03:32:50,053 | INFO     | . get job = 0 s
[2025-06-03 23:33:08] 2025-06-04 03:32:50,053 | INFO     | . initial setup = 1 s
[2025-06-03 23:33:08] 2025-06-04 03:32:50,053 | INFO     | . payload setup = 11 s
[2025-06-03 23:33:08] 2025-06-04 03:32:50,053 | INFO     | . stage-in = 0 s
[2025-06-03 23:33:08] 2025-06-04 03:32:50,053 | INFO     | . payload execution = 6254 s
[2025-06-03 23:33:08] 2025-06-04 03:32:50,053 | INFO     | . stage-out = 0 s
[2025-06-03 23:33:08] 2025-06-04 03:32:50,053 | INFO     | . log creation = 0 s
[2025-06-03 23:33:08] 2025-06-04 03:32:50,053 | INFO     | ..............................
[2025-06-03 23:33:08] 2025-06-04 03:32:50,138 | INFO     | 
[2025-06-03 23:33:08] 2025-06-04 03:32:50,138 | INFO     | job summary report
[2025-06-03 23:33:08] 2025-06-04 03:32:50,139 | INFO     | --------------------------------------------------
[2025-06-03 23:33:08] 2025-06-04 03:32:50,139 | INFO     | PanDA job id: 6678071454
[2025-06-03 23:33:08] 2025-06-04 03:32:50,139 | INFO     | task id: 45006595
[2025-06-03 23:33:08] 2025-06-04 03:32:50,139 | INFO     | errors: (none)
[2025-06-03 23:33:08] 2025-06-04 03:32:50,139 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:33:08] 2025-06-04 03:32:50,139 | INFO     | pilot state: finished 
[2025-06-03 23:33:08] 2025-06-04 03:32:50,140 | INFO     | transexitcode: 0
[2025-06-03 23:33:08] 2025-06-04 03:32:50,140 | INFO     | exeerrorcode: 0
[2025-06-03 23:33:08] 2025-06-04 03:32:50,140 | INFO     | exeerrordiag: 
[2025-06-03 23:33:08] 2025-06-04 03:32:50,140 | INFO     | exitcode: 0
[2025-06-03 23:33:08] 2025-06-04 03:32:50,140 | INFO     | exitmsg: OK
[2025-06-03 23:33:08] 2025-06-04 03:32:50,140 | INFO     | cpuconsumptiontime: 46337 s
[2025-06-03 23:33:08] 2025-06-04 03:32:50,141 | INFO     | nevents: 400
[2025-06-03 23:33:08] 2025-06-04 03:32:50,141 | INFO     | neventsw: 0
[2025-06-03 23:33:08] 2025-06-04 03:32:50,141 | INFO     | pid: 8304
[2025-06-03 23:33:08] 2025-06-04 03:32:50,141 | INFO     | pgrp: 8304
[2025-06-03 23:33:08] 2025-06-04 03:32:50,141 | INFO     | corecount: 8
[2025-06-03 23:33:08] 2025-06-04 03:32:50,141 | INFO     | event service: False
[2025-06-03 23:33:08] 2025-06-04 03:32:50,142 | INFO     | sizes: {0: 2405183, 1: 2405211, 6: 2405417, 11: 2405445, 6269: 2432183, 6270: 2441124, 6272: 2441308, 6280: 2441478}
[2025-06-03 23:33:08] 2025-06-04 03:32:50,142 | INFO     | --------------------------------------------------
[2025-06-03 23:33:08] 2025-06-04 03:32:50,142 | INFO     | 
[2025-06-03 23:33:08] 2025-06-04 03:32:50,142 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 23:33:08] 2025-06-04 03:32:50,170 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,171 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,171 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,171 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,171 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,171 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,172 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,172 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,172 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,172 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,172 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,172 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,173 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,173 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,173 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,173 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,174 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:33:08] 2025-06-04 03:32:50,174 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,174 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:33:08] 2025-06-04 03:32:50,174 | INFO     | job 6678071454 has completed (purged errors)
[2025-06-03 23:33:08] 2025-06-04 03:32:50,174 | INFO     | overall cleanup function is called
[2025-06-03 23:33:08] 2025-06-04 03:32:51,183 | INFO     | --- collectZombieJob: --- 10, [8304]
[2025-06-03 23:33:08] 2025-06-04 03:32:51,183 | INFO     | zombie collector waiting for pid 8304
[2025-06-03 23:33:08] 2025-06-04 03:32:51,183 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:33:08] 2025-06-04 03:32:51,184 | INFO     | collected zombie processes
[2025-06-03 23:33:08] 2025-06-04 03:32:51,184 | INFO     | will attempt to kill all subprocesses of pid=8304
[2025-06-03 23:33:08] 2025-06-04 03:32:51,265 | INFO     | process IDs to be killed: [8304] (in reverse order)
[2025-06-03 23:33:08] 2025-06-04 03:32:51,316 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:33:08] 2025-06-04 03:32:51,317 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:33:08] 2025-06-04 03:32:51,320 | INFO     | did not find any defunct processes belonging to 8304
[2025-06-03 23:33:08] 2025-06-04 03:32:51,322 | INFO     | did not find any defunct processes belonging to 8304
[2025-06-03 23:33:08] 2025-06-04 03:32:51,323 | INFO     | ready for new job
[2025-06-03 23:33:08] 2025-06-04 03:32:51,323 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:33:08] 2025-06-04 03:32:51,324 | INFO     | **************************************
[2025-06-03 23:33:08] 2025-06-04 03:32:51,324 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:33:08] 2025-06-04 03:32:51,324 | INFO     | **************************************
[2025-06-03 23:33:08] 2025-06-04 03:32:51,324 | INFO     | 
[2025-06-03 23:33:08] 2025-06-04 03:32:51,325 | INFO     | architecture information:
[2025-06-03 23:33:08] 2025-06-04 03:32:51,326 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:33:08] 2025-06-04 03:32:51,344 | INFO     | cat /etc/os-release:
[2025-06-03 23:33:08] NAME="CentOS Linux"
[2025-06-03 23:33:08] VERSION="7 (Core)"
[2025-06-03 23:33:08] ID="centos"
[2025-06-03 23:33:08] ID_LIKE="rhel fedora"
[2025-06-03 23:33:08] VERSION_ID="7"
[2025-06-03 23:33:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:33:08] ANSI_COLOR="0;31"
[2025-06-03 23:33:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:33:08] HOME_URL="https://www.centos.org/"
[2025-06-03 23:33:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:33:08] 
[2025-06-03 23:33:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:33:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:33:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:33:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:33:08] 
[2025-06-03 23:33:08] 2025-06-04 03:32:51,344 | INFO     | **************************************
[2025-06-03 23:33:08] 2025-06-04 03:32:51,532 [wrapper] supervise_pilot (15 min periods counter: 8)
[2025-06-03 23:33:08] 2025-06-04 03:32:51,847 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 23:33:08] 2025-06-04 03:32:51,867 | INFO     | sufficient remaining disk space (18639486976 B)
[2025-06-03 23:33:08] 2025-06-04 03:32:51,867 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:33:08] 2025-06-04 03:32:51,867 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:33:08] 2025-06-04 03:32:51,867 | INFO     | update_server=False
[2025-06-03 23:33:08] 2025-06-04 03:32:51,868 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:33:08] 2025-06-04 03:32:51,868 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:33:08] 2025-06-04 03:32:51,869 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:33:08] 2025-06-04 03:32:51,869 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:33:08] 2025-06-04 03:32:51,869 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:33:08] 2025-06-04 03:32:51,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:33:08] 2025-06-04 03:32:51,877 | INFO     | all data control threads have been joined
[2025-06-03 23:33:08] 2025-06-04 03:32:51,931 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-03 23:33:08] 2025-06-04 03:32:51,932 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-03 23:33:08] 2025-06-04 03:32:51,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:33:08] 2025-06-04 03:32:51,932 | INFO     | will abort loop
[2025-06-03 23:33:08] 2025-06-04 03:32:52,298 | INFO     | all job control threads have been joined
[2025-06-03 23:33:08] 2025-06-04 03:32:52,469 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:33:08] 2025-06-04 03:32:52,592 | INFO     | all payload control threads have been joined
[2025-06-03 23:33:08] 2025-06-04 03:32:52,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:33:08] 2025-06-04 03:32:52,873 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:52,874 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:52,882 | INFO     | [data] control thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:52,937 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:53,002 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:53,204 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:53,304 | INFO     | [job] control thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:53,594 | INFO     | [payload] control thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:53,621 | INFO     | [job] validate thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:53,671 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:53,693 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:53,951 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:54,135 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:54,475 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:32:56,847 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:33:01,896 | INFO     | job.realtimelogging is not enabled
[2025-06-03 23:33:08] 2025-06-04 03:33:02,901 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:33:08] 2025-06-04 03:33:03,098 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139971075270464)>', '<ExcThread(monitor, started 139970417252096)>']
[2025-06-03 23:33:08] 2025-06-04 03:33:03,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:33:08] 2025-06-04 03:33:03,923 | INFO     | [monitor] control thread has ended
[2025-06-03 23:33:08] 2025-06-04 03:33:08,115 | INFO     | all workflow threads have been joined
[2025-06-03 23:33:08] 2025-06-04 03:33:08,116 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:33:08] 2025-06-04 03:33:08,116 | INFO     | traces error code: 0
[2025-06-03 23:33:08] 2025-06-04 03:33:08,117 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:33:08] 2025-06-04 03:33:08,228 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:33:08] 2025-06-04 03:33:08,232 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:33:08] 2025-06-04 03:33:08,236 [wrapper] pilotpid: 1618
[2025-06-03 23:33:08] 2025-06-04 03:33:08,241 [wrapper] Pilot exit status: 0
[2025-06-03 23:33:08] 2025-06-04 03:33:08,260 [wrapper] pandaids: 6678071454 6678071454
[2025-06-03 23:33:08] 2025-06-04 03:33:08,303 [wrapper] cleanup supervisor_pilot 14269 1619
[2025-06-03 23:33:08] 2025-06-04 03:33:08,307 [wrapper] Test setup, not cleaning
[2025-06-03 23:33:08] 2025-06-04 03:33:08,312 [wrapper] apfmon messages muted
[2025-06-03 23:33:08] 2025-06-04 03:33:08,317 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:33:08] 2025-06-04 03:33:08,321 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:33:08]  *** Error codes and diagnostics ***
[2025-06-03 23:33:08]     "exeErrorCode": 0,
[2025-06-03 23:33:08]     "exeErrorDiag": "",
[2025-06-03 23:33:08]     "pilotErrorCode": 0,
[2025-06-03 23:33:08]     "pilotErrorDiag": "",
[2025-06-03 23:33:08]  *** Listing of results directory ***
[2025-06-03 23:33:08] total 607128
[2025-06-03 23:33:08] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 16:36 pilot3.tar.gz
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 16:46 queuedata.json
[2025-06-03 23:33:08] -rwx------ 1 boincer umatlas     37140 Jun  3 16:46 runpilot2-wrapper.sh
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas       100 Jun  3 21:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:33:08] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 21:06 run_atlas
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas       105 Jun  3 21:06 job.xml
[2025-06-03 23:33:08] -rw-r--r-- 3 boincer umatlas 217423359 Jun  3 21:06 EVNT.45006593._001814.pool.root.1
[2025-06-03 23:33:08] -rw-r--r-- 3 boincer umatlas 217423359 Jun  3 21:06 ATLAS.root_0
[2025-06-03 23:33:08] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 21:06 start_atlas.sh
[2025-06-03 23:33:08] drwxrwx--x 2 boincer umatlas      4096 Jun  3 21:06 shared
[2025-06-03 23:33:08] -rw-r--r-- 2 boincer umatlas    508883 Jun  3 21:06 input.tar.gz
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas         0 Jun  3 21:06 boinc_lockfile
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas   1603667 Jun  3 21:06 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas      2524 Jun  3 21:47 pandaJob.out
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas    986077 Jun  3 21:47 agis_schedconf.cvmfs.json
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas      5825 Jun  3 23:28 init_data.xml
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas 181216389 Jun  3 23:32 HITS.45006595._045223.pool.root.1
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas        96 Jun  3 23:32 pilot_heartbeat.json
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas       530 Jun  3 23:32 boinc_task_state.xml
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas      1061 Jun  3 23:32 memory_monitor_summary.json
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas    322825 Jun  3 23:32 log.45006595._045223.job.log.tgz.1
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas      7743 Jun  3 23:32 heartbeat.json
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 23:33 boinc_mmap_file
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas        27 Jun  3 23:33 wrapper_checkpoint.txt
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas      4734 Jun  3 23:33 pilotlog.txt
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas    581291 Jun  3 23:33 log.45006595._045223.job.log.1
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas       357 Jun  3 23:33 output.list
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas       620 Jun  3 23:33 runtime_log
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas    921600 Jun  3 23:33 result.tar.gz
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas      8744 Jun  3 23:33 runtime_log.err
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas       783 Jun  3 23:33 BgYNDmvhng7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmH7lKDmWySbHo.diag
[2025-06-03 23:33:08] -rw-r--r-- 1 boincer umatlas     23148 Jun  3 23:33 stderr.txt
[2025-06-03 23:33:08] HITS file was successfully produced:
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas 181216389 Jun  3 23:32 shared/HITS.pool.root.1
[2025-06-03 23:33:08]  *** Contents of shared directory: ***
[2025-06-03 23:33:08] total 390720
[2025-06-03 23:33:08] -rw-r--r-- 3 boincer umatlas 217423359 Jun  3 21:06 ATLAS.root_0
[2025-06-03 23:33:08] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 21:06 start_atlas.sh
[2025-06-03 23:33:08] -rw-r--r-- 2 boincer umatlas    508883 Jun  3 21:06 input.tar.gz
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas 181216389 Jun  3 23:32 HITS.pool.root.1
[2025-06-03 23:33:08] -rw------- 1 boincer umatlas    921600 Jun  3 23:33 result.tar.gz
23:33:09 (30349): run_atlas exited; CPU time 46311.950423
23:33:09 (30349): called boinc_finish(0)

</stderr_txt>
]]>

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