Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:55:07 (4993): wrapper (7.7.26015): starting
20:55:07 (4993): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 20:55:07] Arguments: --nthreads 8
[2025-06-03 20:55:07] Threads: 8
[2025-06-03 20:55:07] Checking for CVMFS
[2025-06-03 20:55:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:55:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:55:07] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:55:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:55:08] 2.11.2.0 2936 7840 70964 146762 1 58 12180968 20275201 1 130560 0 2199545 99.982 1263901 47192 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 20:55:08] CVMFS is ok
[2025-06-03 20:55:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 20:55:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 20:55:08] Further information can be found at the LHC@home message board.
[2025-06-03 20:55:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:55:08] Checking for apptainer binary...
[2025-06-03 20:55:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:55:08] Running /usr/bin/apptainer --version
[2025-06-03 20:55:08] apptainer version 1.3.2-1.el7
[2025-06-03 20:55:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:55:09] c-204-13.aglt2.org
[2025-06-03 20:55:09] apptainer works
[2025-06-03 20:55:09] Set ATHENA_PROC_NUMBER=8
[2025-06-03 20:55:09] Set ATHENA_CORE_NUMBER=8
[2025-06-03 20:55:09] Starting ATLAS job with PandaID=6678071532
[2025-06-03 20:55:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:13:12 (7669): wrapper (7.7.26015): starting
21:13:12 (7669): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 21:13:12] Arguments: --nthreads 8
[2025-06-03 21:13:12] Threads: 8
[2025-06-03 21:13:12] This job has been restarted, cleaning up previous attempt
[2025-06-03 21:13:12] Checking for CVMFS
[2025-06-03 21:13:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 21:13:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 21:13:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 21:13:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 21:13:12] 2.11.2.0 2936 7858 75720 146762 3 187 12186292 20275201 1 130560 0 2261718 99.983 1263972 47178 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 21:13:12] CVMFS is ok
[2025-06-03 21:13:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 21:13:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 21:13:12] Further information can be found at the LHC@home message board.
[2025-06-03 21:13:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 21:13:12] Checking for apptainer binary...
[2025-06-03 21:13:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 21:13:12] Running /usr/bin/apptainer --version
[2025-06-03 21:13:12] apptainer version 1.3.2-1.el7
[2025-06-03 21:13:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 21:13:14] c-204-13.aglt2.org
[2025-06-03 21:13:14] apptainer works
[2025-06-03 21:13:14] Set ATHENA_PROC_NUMBER=8
[2025-06-03 21:13:14] Set ATHENA_CORE_NUMBER=8
[2025-06-03 21:13:14] Starting ATLAS job with PandaID=6678071532
[2025-06-03 21:13:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 23:03:14]  *** The last 200 lines of the pilot log: ***
[2025-06-03 23:03:14] 2025-06-04 03:03:00,215 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678071532/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 23:03:14] 2025-06-04 03:03:00,216 | INFO     | extracted standard info from prmon json
[2025-06-03 23:03:14] 2025-06-04 03:03:00,216 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 23:03:14] 2025-06-04 03:03:00,216 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 23:03:14] 2025-06-04 03:03:00,217 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 23:03:14] 2025-06-04 03:03:00,217 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 23:03:14] 2025-06-04 03:03:00,220 | INFO     | fitting pss+swap vs Time
[2025-06-03 23:03:14] 2025-06-04 03:03:00,220 | INFO     | sum of square deviations: 379832238.0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,221 | INFO     | sum of deviations: 13889008077.0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,222 | INFO     | mean x: 1749002876.0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,222 | INFO     | mean y: 2472819.9345794395
[2025-06-03 23:03:14] 2025-06-04 03:03:00,222 | INFO     | -- intersect: -63951853962.24927
[2025-06-03 23:03:14] 2025-06-04 03:03:00,222 | INFO     | intersect: -63951853962.24927
[2025-06-03 23:03:14] 2025-06-04 03:03:00,222 | INFO     | chi2: 1.524223158062194
[2025-06-03 23:03:14] 2025-06-04 03:03:00,223 | INFO     | sum of square deviations: 329031285.5
[2025-06-03 23:03:14] 2025-06-04 03:03:00,224 | INFO     | sum of deviations: 13394046543.499998
[2025-06-03 23:03:14] 2025-06-04 03:03:00,224 | INFO     | mean x: 1749002723.5
[2025-06-03 23:03:14] 2025-06-04 03:03:00,224 | INFO     | mean y: 2471333.617647059
[2025-06-03 23:03:14] 2025-06-04 03:03:00,224 | INFO     | -- intersect: -71195086210.7006
[2025-06-03 23:03:14] 2025-06-04 03:03:00,224 | INFO     | intersect: -71195086210.7006
[2025-06-03 23:03:14] 2025-06-04 03:03:00,225 | INFO     | chi2: 1.5262816833898978
[2025-06-03 23:03:14] 2025-06-04 03:03:00,225 | INFO     | current chi2=1.5262816833898978 (change=-0.1350540645452967 %)
[2025-06-03 23:03:14] 2025-06-04 03:03:00,225 | INFO     | right removable region: 101
[2025-06-03 23:03:14] 2025-06-04 03:03:00,225 | INFO     | sum of square deviations: 329031285.5
[2025-06-03 23:03:14] 2025-06-04 03:03:00,226 | INFO     | sum of deviations: -3201286252.4999995
[2025-06-03 23:03:14] 2025-06-04 03:03:00,226 | INFO     | mean x: 1749003028.5
[2025-06-03 23:03:14] 2025-06-04 03:03:00,226 | INFO     | mean y: 2523212.1078431373
[2025-06-03 23:03:14] 2025-06-04 03:03:00,226 | INFO     | -- intersect: 17019322518.014318
[2025-06-03 23:03:14] 2025-06-04 03:03:00,226 | INFO     | intersect: 17019322518.014318
[2025-06-03 23:03:14] 2025-06-04 03:03:00,226 | INFO     | chi2: 0.029438261550170486
[2025-06-03 23:03:14] 2025-06-04 03:03:00,226 | INFO     | current chi2=0.029438261550170486 (change=98.06863834901993 %)
[2025-06-03 23:03:14] 2025-06-04 03:03:00,227 | INFO     | sum of square deviations: 282974608.0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,227 | INFO     | sum of deviations: -4399577298.000001
[2025-06-03 23:03:14] 2025-06-04 03:03:00,227 | INFO     | mean x: 1749003181.0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,227 | INFO     | mean y: 2527038.6288659796
[2025-06-03 23:03:14] 2025-06-04 03:03:00,228 | INFO     | -- intersect: 27195336823.376007
[2025-06-03 23:03:14] 2025-06-04 03:03:00,228 | INFO     | intersect: 27195336823.376007
[2025-06-03 23:03:14] 2025-06-04 03:03:00,228 | INFO     | chi2: 0.006893299427053521
[2025-06-03 23:03:14] 2025-06-04 03:03:00,228 | INFO     | current chi2=0.006893299427053521 (change=76.58387736210054 %)
[2025-06-03 23:03:14] 2025-06-04 03:03:00,228 | INFO     | sum of square deviations: 241429643.0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,229 | INFO     | sum of deviations: -3980930363.4999995
[2025-06-03 23:03:14] 2025-06-04 03:03:00,229 | INFO     | mean x: 1749003333.5
[2025-06-03 23:03:14] 2025-06-04 03:03:00,229 | INFO     | mean y: 2525496.3804347827
[2025-06-03 23:03:14] 2025-06-04 03:03:00,229 | INFO     | -- intersect: 28841819585.02251
[2025-06-03 23:03:14] 2025-06-04 03:03:00,229 | INFO     | intersect: 28841819585.02251
[2025-06-03 23:03:14] 2025-06-04 03:03:00,229 | INFO     | chi2: 0.006660356823250067
[2025-06-03 23:03:14] 2025-06-04 03:03:00,229 | INFO     | current chi2=0.006660356823250067 (change=3.379261357619908 %)
[2025-06-03 23:03:14] 2025-06-04 03:03:00,230 | INFO     | left removable region: 30
[2025-06-03 23:03:14] 2025-06-04 03:03:00,230 | INFO     | sum of square deviations: 110960220.0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,230 | INFO     | sum of deviations: -2164416335.0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,230 | INFO     | mean x: 1749003608.0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,230 | INFO     | mean y: 2519277.591549296
[2025-06-03 23:03:14] 2025-06-04 03:03:00,231 | INFO     | -- intersect: 34118997950.120647
[2025-06-03 23:03:14] 2025-06-04 03:03:00,231 | INFO     | intersect: 34118997950.120647
[2025-06-03 23:03:14] 2025-06-04 03:03:00,231 | INFO     | chi2: 0.005938805397176972
[2025-06-03 23:03:14] 2025-06-04 03:03:00,231 | INFO     | -- intersect: 34118997950.120647
[2025-06-03 23:03:14] 2025-06-04 03:03:00,231 | INFO     | current memory leak: -19.51 B/s (using 71 data points, chi2=0.01)
[2025-06-03 23:03:14] 2025-06-04 03:03:00,232 | INFO     | ..............................
[2025-06-03 23:03:14] 2025-06-04 03:03:00,232 | INFO     | . Timing measurements:
[2025-06-03 23:03:14] 2025-06-04 03:03:00,232 | INFO     | . get job = 0 s
[2025-06-03 23:03:14] 2025-06-04 03:03:00,232 | INFO     | . initial setup = 1 s
[2025-06-03 23:03:14] 2025-06-04 03:03:00,232 | INFO     | . payload setup = 12 s
[2025-06-03 23:03:14] 2025-06-04 03:03:00,232 | INFO     | . stage-in = 0 s
[2025-06-03 23:03:14] 2025-06-04 03:03:00,232 | INFO     | . payload execution = 6531 s
[2025-06-03 23:03:14] 2025-06-04 03:03:00,232 | INFO     | . stage-out = 0 s
[2025-06-03 23:03:14] 2025-06-04 03:03:00,232 | INFO     | . log creation = 0 s
[2025-06-03 23:03:14] 2025-06-04 03:03:00,233 | INFO     | ..............................
[2025-06-03 23:03:14] 2025-06-04 03:03:00,327 | INFO     | 
[2025-06-03 23:03:14] 2025-06-04 03:03:00,327 | INFO     | job summary report
[2025-06-03 23:03:14] 2025-06-04 03:03:00,327 | INFO     | --------------------------------------------------
[2025-06-03 23:03:14] 2025-06-04 03:03:00,328 | INFO     | PanDA job id: 6678071532
[2025-06-03 23:03:14] 2025-06-04 03:03:00,328 | INFO     | task id: 45006595
[2025-06-03 23:03:14] 2025-06-04 03:03:00,328 | INFO     | errors: (none)
[2025-06-03 23:03:14] 2025-06-04 03:03:00,328 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 23:03:14] 2025-06-04 03:03:00,328 | INFO     | pilot state: finished 
[2025-06-03 23:03:14] 2025-06-04 03:03:00,328 | INFO     | transexitcode: 0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,329 | INFO     | exeerrorcode: 0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,329 | INFO     | exeerrordiag: 
[2025-06-03 23:03:14] 2025-06-04 03:03:00,329 | INFO     | exitcode: 0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,329 | INFO     | exitmsg: OK
[2025-06-03 23:03:14] 2025-06-04 03:03:00,329 | INFO     | cpuconsumptiontime: 48447 s
[2025-06-03 23:03:14] 2025-06-04 03:03:00,329 | INFO     | nevents: 400
[2025-06-03 23:03:14] 2025-06-04 03:03:00,330 | INFO     | neventsw: 0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,330 | INFO     | pid: 17852
[2025-06-03 23:03:14] 2025-06-04 03:03:00,330 | INFO     | pgrp: 17852
[2025-06-03 23:03:14] 2025-06-04 03:03:00,330 | INFO     | corecount: 8
[2025-06-03 23:03:14] 2025-06-04 03:03:00,330 | INFO     | event service: False
[2025-06-03 23:03:14] 2025-06-04 03:03:00,331 | INFO     | sizes: {0: 2405013, 1: 2405212, 7: 2405418, 11: 2405446, 6547: 2432343, 6548: 2441284, 6549: 2441468, 6554: 2441638}
[2025-06-03 23:03:14] 2025-06-04 03:03:00,331 | INFO     | --------------------------------------------------
[2025-06-03 23:03:14] 2025-06-04 03:03:00,331 | INFO     | 
[2025-06-03 23:03:14] 2025-06-04 03:03:00,331 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 23:03:14] 2025-06-04 03:03:00,360 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,361 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,361 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,361 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,361 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,361 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,361 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,362 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,362 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,362 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,362 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,363 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,363 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,363 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,363 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,363 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,363 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 23:03:14] 2025-06-04 03:03:00,364 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,364 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 23:03:14] 2025-06-04 03:03:00,364 | INFO     | job 6678071532 has completed (purged errors)
[2025-06-03 23:03:14] 2025-06-04 03:03:00,364 | INFO     | overall cleanup function is called
[2025-06-03 23:03:14] 2025-06-04 03:03:01,368 | INFO     | --- collectZombieJob: --- 10, [17852]
[2025-06-03 23:03:14] 2025-06-04 03:03:01,369 | INFO     | zombie collector waiting for pid 17852
[2025-06-03 23:03:14] 2025-06-04 03:03:01,369 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 23:03:14] 2025-06-04 03:03:01,369 | INFO     | collected zombie processes
[2025-06-03 23:03:14] 2025-06-04 03:03:01,369 | INFO     | will attempt to kill all subprocesses of pid=17852
[2025-06-03 23:03:14] 2025-06-04 03:03:01,471 | INFO     | process IDs to be killed: [17852] (in reverse order)
[2025-06-03 23:03:14] 2025-06-04 03:03:01,529 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 23:03:14] 2025-06-04 03:03:01,530 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 23:03:14] 2025-06-04 03:03:01,535 | INFO     | did not find any defunct processes belonging to 17852
[2025-06-03 23:03:14] 2025-06-04 03:03:01,538 | INFO     | did not find any defunct processes belonging to 17852
[2025-06-03 23:03:14] 2025-06-04 03:03:01,538 | INFO     | ready for new job
[2025-06-03 23:03:14] 2025-06-04 03:03:01,538 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 23:03:14] 2025-06-04 03:03:01,540 | INFO     | **************************************
[2025-06-03 23:03:14] 2025-06-04 03:03:01,540 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 23:03:14] 2025-06-04 03:03:01,540 | INFO     | **************************************
[2025-06-03 23:03:14] 2025-06-04 03:03:01,540 | INFO     | 
[2025-06-03 23:03:14] 2025-06-04 03:03:01,541 | INFO     | architecture information:
[2025-06-03 23:03:14] 2025-06-04 03:03:01,542 | INFO     | executing command: cat /etc/os-release
[2025-06-03 23:03:14] 2025-06-04 03:03:01,559 | INFO     | cat /etc/os-release:
[2025-06-03 23:03:14] NAME="CentOS Linux"
[2025-06-03 23:03:14] VERSION="7 (Core)"
[2025-06-03 23:03:14] ID="centos"
[2025-06-03 23:03:14] ID_LIKE="rhel fedora"
[2025-06-03 23:03:14] VERSION_ID="7"
[2025-06-03 23:03:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 23:03:14] ANSI_COLOR="0;31"
[2025-06-03 23:03:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 23:03:14] HOME_URL="https://www.centos.org/"
[2025-06-03 23:03:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 23:03:14] 
[2025-06-03 23:03:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 23:03:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 23:03:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 23:03:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 23:03:14] 
[2025-06-03 23:03:14] 2025-06-04 03:03:01,560 | INFO     | **************************************
[2025-06-03 23:03:14] 2025-06-04 03:03:02,063 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 23:03:14] 2025-06-04 03:03:02,084 | INFO     | sufficient remaining disk space (18656264192 B)
[2025-06-03 23:03:14] 2025-06-04 03:03:02,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 23:03:14] 2025-06-04 03:03:02,085 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 23:03:14] 2025-06-04 03:03:02,085 | INFO     | update_server=False
[2025-06-03 23:03:14] 2025-06-04 03:03:02,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 23:03:14] 2025-06-04 03:03:02,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:03:14] 2025-06-04 03:03:02,086 | INFO     | aborting loop
[2025-06-03 23:03:14] 2025-06-04 03:03:02,086 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 23:03:14] 2025-06-04 03:03:02,086 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 23:03:14] 2025-06-04 03:03:02,087 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 23:03:14] 2025-06-04 03:03:02,087 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 23:03:14] 2025-06-04 03:03:02,088 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 23:03:14] 2025-06-04 03:03:02,203 | INFO     | all data control threads have been joined
[2025-06-03 23:03:14] 2025-06-04 03:03:02,304 | INFO     | all job control threads have been joined
[2025-06-03 23:03:14] 2025-06-04 03:03:02,396 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 23:03:14] 2025-06-04 03:03:02,925 | INFO     | all payload control threads have been joined
[2025-06-03 23:03:14] 2025-06-04 03:03:03,090 | INFO     | [job] job monitor thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:03,091 | INFO     | [job] retrieve thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:03,092 | INFO     | [job] queue monitor thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:03,208 | INFO     | [data] control thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:03,305 | INFO     | [job] control thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:03,461 | INFO     | [payload] failed_post thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:03,527 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:03,561 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:03,656 | INFO     | [job] validate thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:03,930 | INFO     | [payload] control thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:04,033 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:04,037 | INFO     | [payload] validate_post thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:04,045 | INFO     | [data] copytool_in thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:04,400 | INFO     | [data] copytool_out thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:04,591 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:04,983 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 23:03:14] 2025-06-04 03:03:08,989 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 23:03:14] 2025-06-04 03:03:09,556 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139648005637952)>', '<ExcThread(monitor, started 139647262893824)>']
[2025-06-03 23:03:14] 2025-06-04 03:03:10,125 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 23:03:14] 2025-06-04 03:03:10,125 | INFO     | [monitor] control thread has ended
[2025-06-03 23:03:14] 2025-06-04 03:03:14,582 | INFO     | all workflow threads have been joined
[2025-06-03 23:03:14] 2025-06-04 03:03:14,582 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 23:03:14] 2025-06-04 03:03:14,582 | INFO     | traces error code: 0
[2025-06-03 23:03:14] 2025-06-04 03:03:14,583 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 23:03:14] 2025-06-04 03:03:14,703 [wrapper] ==== pilot stdout END ====
[2025-06-03 23:03:14] 2025-06-04 03:03:14,708 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 23:03:14] 2025-06-04 03:03:14,712 [wrapper] pilotpid: 11365
[2025-06-03 23:03:14] 2025-06-04 03:03:14,716 [wrapper] Pilot exit status: 0
[2025-06-03 23:03:14] 2025-06-04 03:03:14,736 [wrapper] pandaids: 6678071532 6678071532
[2025-06-03 23:03:14] 2025-06-04 03:03:14,780 [wrapper] cleanup supervisor_pilot 23353 11366
[2025-06-03 23:03:14] 2025-06-04 03:03:14,785 [wrapper] Test setup, not cleaning
[2025-06-03 23:03:14] 2025-06-04 03:03:14,790 [wrapper] apfmon messages muted
[2025-06-03 23:03:14] 2025-06-04 03:03:14,795 [wrapper] ==== wrapper stdout END ====
[2025-06-03 23:03:14] 2025-06-04 03:03:14,799 [wrapper] ==== wrapper stderr END ====
[2025-06-03 23:03:14]  *** Error codes and diagnostics ***
[2025-06-03 23:03:14]     "exeErrorCode": 0,
[2025-06-03 23:03:14]     "exeErrorDiag": "",
[2025-06-03 23:03:14]     "pilotErrorCode": 0,
[2025-06-03 23:03:14]     "pilotErrorDiag": "",
[2025-06-03 23:03:14]  *** Listing of results directory ***
[2025-06-03 23:03:14] total 592308
[2025-06-03 23:03:14] drwx------ 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 16:49 queuedata.json
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 16:49 pilot3.tar.gz
[2025-06-03 23:03:14] -rwx------ 1 boincer umatlas     37140 Jun  3 16:51 runpilot2-wrapper.sh
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas       100 Jun  3 20:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 23:03:14] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 20:55 run_atlas
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas       105 Jun  3 20:55 job.xml
[2025-06-03 23:03:14] -rw-r--r-- 3 boincer umatlas 214125776 Jun  3 20:55 EVNT.45006593._001817.pool.root.1
[2025-06-03 23:03:14] -rw-r--r-- 3 boincer umatlas 214125776 Jun  3 20:55 ATLAS.root_0
[2025-06-03 23:03:14] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 20:55 start_atlas.sh
[2025-06-03 23:03:14] drwxrwx--x 2 boincer umatlas      4096 Jun  3 20:55 shared
[2025-06-03 23:03:14] -rw-r--r-- 2 boincer umatlas    508883 Jun  3 20:55 input.tar.gz
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas         0 Jun  3 20:55 boinc_lockfile
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas   1603667 Jun  3 20:55 agis_ddmendpoints.agis.ALL.json
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 21:13 pandaJob.out
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas    986069 Jun  3 21:13 agis_schedconf.cvmfs.json
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas      5824 Jun  3 22:58 init_data.xml
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas        96 Jun  3 23:02 pilot_heartbeat.json
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas 172580537 Jun  3 23:02 HITS.45006595._045301.pool.root.1
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas       529 Jun  3 23:02 boinc_task_state.xml
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas      1046 Jun  3 23:02 memory_monitor_summary.json
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas    327606 Jun  3 23:02 log.45006595._045301.job.log.tgz.1
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas      7746 Jun  3 23:03 heartbeat.json
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas        27 Jun  3 23:03 wrapper_checkpoint.txt
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 23:03 boinc_mmap_file
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas      4476 Jun  3 23:03 pilotlog.txt
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas    605781 Jun  3 23:03 log.45006595._045301.job.log.1
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas       357 Jun  3 23:03 output.list
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas       620 Jun  3 23:03 runtime_log
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas    952320 Jun  3 23:03 result.tar.gz
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas      8744 Jun  3 23:03 runtime_log.err
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas       783 Jun  3 23:03 pJRKDmKmng7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmb7lKDmRbKwnn.diag
[2025-06-03 23:03:14] -rw-r--r-- 1 boincer umatlas     22986 Jun  3 23:03 stderr.txt
[2025-06-03 23:03:14] HITS file was successfully produced:
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas 172580537 Jun  3 23:02 shared/HITS.pool.root.1
[2025-06-03 23:03:14]  *** Contents of shared directory: ***
[2025-06-03 23:03:14] total 379092
[2025-06-03 23:03:14] -rw-r--r-- 3 boincer umatlas 214125776 Jun  3 20:55 ATLAS.root_0
[2025-06-03 23:03:14] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 20:55 start_atlas.sh
[2025-06-03 23:03:14] -rw-r--r-- 2 boincer umatlas    508883 Jun  3 20:55 input.tar.gz
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas 172580537 Jun  3 23:02 HITS.pool.root.1
[2025-06-03 23:03:14] -rw------- 1 boincer umatlas    952320 Jun  3 23:03 result.tar.gz
23:03:16 (7669): run_atlas exited; CPU time 48391.654996
23:03:16 (7669): called boinc_finish(0)

</stderr_txt>
]]>

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