Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:11:17 (8048): wrapper (7.7.26015): starting
14:11:17 (8048): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 14:11:17] Arguments: --nthreads 8
[2025-06-04 14:11:17] Threads: 8
[2025-06-04 14:11:17] Checking for CVMFS
[2025-06-04 14:11:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 14:11:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 14:11:19] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 14:11:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 14:11:20] 2.11.2.0 14465 33187 94264 146779 3 104 16655507 25165824 4293 130560 0 17933468 99.801 20303244 2030 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 14:11:20] CVMFS is ok
[2025-06-04 14:11:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 14:11:20] Checking for apptainer binary...
[2025-06-04 14:11:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 14:11:20] Running /usr/bin/apptainer --version
[2025-06-04 14:11:20] apptainer version 1.3.2-1.el7
[2025-06-04 14:11:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 14:13:03] cg-vwn249.simple-grid.lan
[2025-06-04 14:13:03] apptainer works
[2025-06-04 14:13:03] Set ATHENA_PROC_NUMBER=8
[2025-06-04 14:13:03] Set ATHENA_CORE_NUMBER=8
[2025-06-04 14:13:03] Starting ATLAS job with PandaID=6678070932
[2025-06-04 14:13:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/21 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:27:01]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:27:01] 2025-06-04 16:26:46,729 | INFO     | extracted standard info from prmon json
[2025-06-04 18:27:01] 2025-06-04 16:26:46,729 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:27:01] 2025-06-04 16:26:46,729 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:27:01] 2025-06-04 16:26:46,729 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:27:01] 2025-06-04 16:26:46,730 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:27:01] 2025-06-04 16:26:46,735 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:27:01] 2025-06-04 16:26:46,736 | INFO     | sum of square deviations: 4180243959.5
[2025-06-04 18:27:01] 2025-06-04 16:26:46,738 | INFO     | sum of deviations: 47689809149.999985
[2025-06-04 18:27:01] 2025-06-04 16:26:46,739 | INFO     | mean x: 1749047115.5
[2025-06-04 18:27:01] 2025-06-04 16:26:46,739 | INFO     | mean y: 2486480.2352941176
[2025-06-04 18:27:01] 2025-06-04 16:26:46,739 | INFO     | -- intersect: -19951306633.439793
[2025-06-04 18:27:01] 2025-06-04 16:26:46,739 | INFO     | intersect: -19951306633.439793
[2025-06-04 18:27:01] 2025-06-04 16:26:46,740 | INFO     | chi2: 5.818654634712599
[2025-06-04 18:27:01] 2025-06-04 16:26:46,740 | INFO     | sum of square deviations: 3922276332.0
[2025-06-04 18:27:01] 2025-06-04 16:26:46,742 | INFO     | sum of deviations: 47124014203.00001
[2025-06-04 18:27:01] 2025-06-04 16:26:46,743 | INFO     | mean x: 1749046963.0
[2025-06-04 18:27:01] 2025-06-04 16:26:46,743 | INFO     | mean y: 2486145.729613734
[2025-06-04 18:27:01] 2025-06-04 16:26:46,743 | INFO     | -- intersect: -21011360648.71547
[2025-06-04 18:27:01] 2025-06-04 16:26:46,743 | INFO     | intersect: -21011360648.71547
[2025-06-04 18:27:01] 2025-06-04 16:26:46,743 | INFO     | chi2: 5.826744419430597
[2025-06-04 18:27:01] 2025-06-04 16:26:46,744 | INFO     | current chi2=5.826744419430597 (change=-0.13903187636770334 %)
[2025-06-04 18:27:01] 2025-06-04 16:26:46,744 | INFO     | right removable region: 232
[2025-06-04 18:27:01] 2025-06-04 16:26:46,744 | INFO     | sum of square deviations: 3922276332.0
[2025-06-04 18:27:01] 2025-06-04 16:26:46,746 | INFO     | sum of deviations: -34982780444.0
[2025-06-04 18:27:01] 2025-06-04 16:26:46,746 | INFO     | mean x: 1749047268.0
[2025-06-04 18:27:01] 2025-06-04 16:26:46,747 | INFO     | mean y: 2535303.738197425
[2025-06-04 18:27:01] 2025-06-04 16:26:46,747 | INFO     | -- intersect: 15602286923.334698
[2025-06-04 18:27:01] 2025-06-04 16:26:46,747 | INFO     | intersect: 15602286923.334698
[2025-06-04 18:27:01] 2025-06-04 16:26:46,747 | INFO     | chi2: 1.0877535056108105
[2025-06-04 18:27:01] 2025-06-04 16:26:46,747 | INFO     | current chi2=1.0877535056108105 (change=81.30575581644678 %)
[2025-06-04 18:27:01] 2025-06-04 16:26:46,748 | INFO     | sum of square deviations: 3675146117.0
[2025-06-04 18:27:01] 2025-06-04 16:26:46,750 | INFO     | sum of deviations: -63743943235.99999
[2025-06-04 18:27:01] 2025-06-04 16:26:46,750 | INFO     | mean x: 1749047420.5
[2025-06-04 18:27:01] 2025-06-04 16:26:46,750 | INFO     | mean y: 2552914.1403508773
[2025-06-04 18:27:01] 2025-06-04 16:26:46,750 | INFO     | -- intersect: 30339082657.462173
[2025-06-04 18:27:01] 2025-06-04 16:26:46,750 | INFO     | intersect: 30339082657.462173
[2025-06-04 18:27:01] 2025-06-04 16:26:46,752 | INFO     | chi2: 0.254469385703312
[2025-06-04 18:27:01] 2025-06-04 16:26:46,752 | INFO     | current chi2=0.254469385703312 (change=76.60596960701875 %)
[2025-06-04 18:27:01] 2025-06-04 16:26:46,752 | INFO     | sum of square deviations: 3438620752.0
[2025-06-04 18:27:01] 2025-06-04 16:26:46,754 | INFO     | sum of deviations: -65307045910.0
[2025-06-04 18:27:01] 2025-06-04 16:26:46,755 | INFO     | mean x: 1749047573.0
[2025-06-04 18:27:01] 2025-06-04 16:26:46,755 | INFO     | mean y: 2553893.3587443945
[2025-06-04 18:27:01] 2025-06-04 16:26:46,755 | INFO     | -- intersect: 33220852271.348957
[2025-06-04 18:27:01] 2025-06-04 16:26:46,755 | INFO     | intersect: 33220852271.348957
[2025-06-04 18:27:01] 2025-06-04 16:26:46,755 | INFO     | chi2: 0.22475259287463317
[2025-06-04 18:27:01] 2025-06-04 16:26:46,756 | INFO     | current chi2=0.22475259287463317 (change=11.677944184345183 %)
[2025-06-04 18:27:01] 2025-06-04 16:26:46,756 | INFO     | left removable region: 30
[2025-06-04 18:27:01] 2025-06-04 16:26:46,756 | INFO     | sum of square deviations: 2555770710.5
[2025-06-04 18:27:01] 2025-06-04 16:26:46,758 | INFO     | sum of deviations: -44869885076.5
[2025-06-04 18:27:01] 2025-06-04 16:26:46,758 | INFO     | mean x: 1749047847.5
[2025-06-04 18:27:01] 2025-06-04 16:26:46,758 | INFO     | mean y: 2541576.698019802
[2025-06-04 18:27:01] 2025-06-04 16:26:46,758 | INFO     | -- intersect: 30709355606.69028
[2025-06-04 18:27:01] 2025-06-04 16:26:46,758 | INFO     | intersect: 30709355606.69028
[2025-06-04 18:27:01] 2025-06-04 16:26:46,759 | INFO     | chi2: 0.20781754281848958
[2025-06-04 18:27:01] 2025-06-04 16:26:46,759 | INFO     | -- intersect: 30709355606.69028
[2025-06-04 18:27:01] 2025-06-04 16:26:46,759 | INFO     | current memory leak: -17.56 B/s (using 202 data points, chi2=0.21)
[2025-06-04 18:27:01] 2025-06-04 16:26:46,760 | INFO     | ..............................
[2025-06-04 18:27:01] 2025-06-04 16:26:46,760 | INFO     | . Timing measurements:
[2025-06-04 18:27:01] 2025-06-04 16:26:46,760 | INFO     | . get job = 0 s
[2025-06-04 18:27:01] 2025-06-04 16:26:46,761 | INFO     | . initial setup = 4 s
[2025-06-04 18:27:01] 2025-06-04 16:26:46,761 | INFO     | . payload setup = 182 s
[2025-06-04 18:27:01] 2025-06-04 16:26:46,761 | INFO     | . stage-in = 0 s
[2025-06-04 18:27:01] 2025-06-04 16:26:46,761 | INFO     | . payload execution = 14655 s
[2025-06-04 18:27:01] 2025-06-04 16:26:46,761 | INFO     | . stage-out = 2 s
[2025-06-04 18:27:01] 2025-06-04 16:26:46,761 | INFO     | . log creation = 0 s
[2025-06-04 18:27:01] 2025-06-04 16:26:46,761 | INFO     | ..............................
[2025-06-04 18:27:01] 2025-06-04 16:26:47,153 | INFO     | 
[2025-06-04 18:27:01] 2025-06-04 16:26:47,153 | INFO     | job summary report
[2025-06-04 18:27:01] 2025-06-04 16:26:47,153 | INFO     | --------------------------------------------------
[2025-06-04 18:27:01] 2025-06-04 16:26:47,153 | INFO     | PanDA job id: 6678070932
[2025-06-04 18:27:01] 2025-06-04 16:26:47,153 | INFO     | task id: 45006595
[2025-06-04 18:27:01] 2025-06-04 16:26:47,153 | INFO     | errors: (none)
[2025-06-04 18:27:01] 2025-06-04 16:26:47,154 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:27:01] 2025-06-04 16:26:47,154 | INFO     | pilot state: finished 
[2025-06-04 18:27:01] 2025-06-04 16:26:47,154 | INFO     | transexitcode: 0
[2025-06-04 18:27:01] 2025-06-04 16:26:47,154 | INFO     | exeerrorcode: 0
[2025-06-04 18:27:01] 2025-06-04 16:26:47,154 | INFO     | exeerrordiag: 
[2025-06-04 18:27:01] 2025-06-04 16:26:47,154 | INFO     | exitcode: 0
[2025-06-04 18:27:01] 2025-06-04 16:26:47,154 | INFO     | exitmsg: OK
[2025-06-04 18:27:01] 2025-06-04 16:26:47,154 | INFO     | cpuconsumptiontime: 52141 s
[2025-06-04 18:27:01] 2025-06-04 16:26:47,154 | INFO     | nevents: 400
[2025-06-04 18:27:01] 2025-06-04 16:26:47,154 | INFO     | neventsw: 0
[2025-06-04 18:27:01] 2025-06-04 16:26:47,154 | INFO     | pid: 24396
[2025-06-04 18:27:01] 2025-06-04 16:26:47,155 | INFO     | pgrp: 24396
[2025-06-04 18:27:01] 2025-06-04 16:26:47,155 | INFO     | corecount: 8
[2025-06-04 18:27:01] 2025-06-04 16:26:47,155 | INFO     | event service: False
[2025-06-04 18:27:01] 2025-06-04 16:26:47,155 | INFO     | sizes: {0: 2396463, 1: 2397149, 2: 2397348, 13: 2397348, 24: 2397404, 34: 2397432, 45: 2397588, 56: 2397616, 66: 2397644, 77: 2397672, 88: 2397728, 89: 2398242, 99
[2025-06-04 18:27:01] 2025-06-04 16:26:47,155 | INFO     | --------------------------------------------------
[2025-06-04 18:27:01] 2025-06-04 16:26:47,155 | INFO     | 
[2025-06-04 18:27:01] 2025-06-04 16:26:47,155 | INFO     | executing command: ls -lF /var/lib/boinc/slots/21
[2025-06-04 18:27:01] 2025-06-04 16:26:47,229 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,230 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,230 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,230 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,230 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,230 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,230 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,230 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,230 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,230 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,230 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,231 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,231 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,231 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,231 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,231 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,231 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,231 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:27:01] 2025-06-04 16:26:47,231 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,231 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:27:01] 2025-06-04 16:26:47,231 | INFO     | job 6678070932 has completed (purged errors)
[2025-06-04 18:27:01] 2025-06-04 16:26:47,231 | INFO     | overall cleanup function is called
[2025-06-04 18:27:01] 2025-06-04 16:26:48,240 | INFO     | --- collectZombieJob: --- 10, [24396]
[2025-06-04 18:27:01] 2025-06-04 16:26:48,240 | INFO     | zombie collector waiting for pid 24396
[2025-06-04 18:27:01] 2025-06-04 16:26:48,240 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:27:01] 2025-06-04 16:26:48,240 | INFO     | collected zombie processes
[2025-06-04 18:27:01] 2025-06-04 16:26:48,240 | INFO     | will attempt to kill all subprocesses of pid=24396
[2025-06-04 18:27:01] 2025-06-04 16:26:48,345 | INFO     | process IDs to be killed: [24396] (in reverse order)
[2025-06-04 18:27:01] 2025-06-04 16:26:48,457 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:27:01] 2025-06-04 16:26:48,457 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:27:01] 2025-06-04 16:26:48,460 | INFO     | did not find any defunct processes belonging to 24396
[2025-06-04 18:27:01] 2025-06-04 16:26:48,463 | INFO     | did not find any defunct processes belonging to 24396
[2025-06-04 18:27:01] 2025-06-04 16:26:48,464 | INFO     | ready for new job
[2025-06-04 18:27:01] 2025-06-04 16:26:48,464 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:27:01] 2025-06-04 16:26:48,466 | INFO     | **************************************
[2025-06-04 18:27:01] 2025-06-04 16:26:48,466 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:27:01] 2025-06-04 16:26:48,466 | INFO     | **************************************
[2025-06-04 18:27:01] 2025-06-04 16:26:48,466 | INFO     | 
[2025-06-04 18:27:01] 2025-06-04 16:26:48,467 | INFO     | pilot is running in a VM
[2025-06-04 18:27:01] 2025-06-04 16:26:48,467 | INFO     | architecture information:
[2025-06-04 18:27:01] 2025-06-04 16:26:48,467 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:27:01] 2025-06-04 16:26:48,488 | INFO     | cat /etc/os-release:
[2025-06-04 18:27:01] NAME="CentOS Linux"
[2025-06-04 18:27:01] VERSION="7 (Core)"
[2025-06-04 18:27:01] ID="centos"
[2025-06-04 18:27:01] ID_LIKE="rhel fedora"
[2025-06-04 18:27:01] VERSION_ID="7"
[2025-06-04 18:27:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:27:01] ANSI_COLOR="0;31"
[2025-06-04 18:27:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:27:01] HOME_URL="https://www.centos.org/"
[2025-06-04 18:27:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:27:01] 
[2025-06-04 18:27:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:27:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:27:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:27:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:27:01] 
[2025-06-04 18:27:01] 2025-06-04 16:26:48,489 | INFO     | **************************************
[2025-06-04 18:27:01] 2025-06-04 16:26:48,991 | INFO     | executing command: df -mP /var/lib/boinc/slots/21
[2025-06-04 18:27:01] 2025-06-04 16:26:49,018 | INFO     | sufficient remaining disk space (496567844864 B)
[2025-06-04 18:27:01] 2025-06-04 16:26:49,018 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:27:01] 2025-06-04 16:26:49,018 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:27:01] 2025-06-04 16:26:49,018 | INFO     | update_server=False
[2025-06-04 18:27:01] 2025-06-04 16:26:49,019 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:27:01] 2025-06-04 16:26:49,020 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 18:27:01] 2025-06-04 16:26:49,020 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:27:01] 2025-06-04 16:26:49,020 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:27:01] 2025-06-04 16:26:49,020 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:27:01] 2025-06-04 16:26:49,129 | INFO     | all data control threads have been joined
[2025-06-04 18:27:01] 2025-06-04 16:26:49,533 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:27:01] 2025-06-04 16:26:49,533 | INFO     | aborting loop
[2025-06-04 18:27:01] 2025-06-04 16:26:49,546 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:27:01] 2025-06-04 16:26:49,767 | INFO     | all job control threads have been joined
[2025-06-04 18:27:01] 2025-06-04 16:26:49,865 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:27:01] 2025-06-04 16:26:50,027 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:50,105 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:50,135 | INFO     | [data] control thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:50,151 | INFO     | all payload control threads have been joined
[2025-06-04 18:27:01] 2025-06-04 16:26:50,211 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:50,539 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:50,771 | INFO     | [job] control thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:50,850 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:50,877 | INFO     | [job] validate thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:50,894 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:51,028 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:51,066 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:51,156 | INFO     | [payload] control thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:51,268 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:51,553 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:51,965 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:27:01] 2025-06-04 16:26:52,971 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:53,871 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:27:01] 2025-06-04 16:26:55,527 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139620764813120)>', '<ExcThread(monitor, started 139620167698176)>']
[2025-06-04 18:27:01] 2025-06-04 16:26:56,053 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:27:01] 2025-06-04 16:26:56,053 | INFO     | [monitor] control thread has ended
[2025-06-04 18:27:01] 2025-06-04 16:27:00,535 | INFO     | all workflow threads have been joined
[2025-06-04 18:27:01] 2025-06-04 16:27:00,535 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:27:01] 2025-06-04 16:27:00,535 | INFO     | traces error code: 0
[2025-06-04 18:27:01] 2025-06-04 16:27:00,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:27:01] 2025-06-04 16:27:00,830 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:27:01] 2025-06-04 16:27:00,857 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:27:01] 2025-06-04 16:27:00,878 [wrapper] pilotpid: 11754
[2025-06-04 18:27:01] 2025-06-04 16:27:00,890 [wrapper] Pilot exit status: 0
[2025-06-04 18:27:01] 2025-06-04 16:27:00,911 [wrapper] pandaids: 6678070932
[2025-06-04 18:27:01] 2025-06-04 16:27:00,953 [wrapper] cleanup supervisor_pilot 12878 11755
[2025-06-04 18:27:01] 2025-06-04 16:27:01,004 [wrapper] Test setup, not cleaning
[2025-06-04 18:27:01] 2025-06-04 16:27:01,089 [wrapper] apfmon messages muted
[2025-06-04 18:27:01] 2025-06-04 16:27:01,102 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:27:01] 2025-06-04 16:27:01,107 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:27:01]  *** Error codes and diagnostics ***
[2025-06-04 18:27:01]     "exeErrorCode": 0,
[2025-06-04 18:27:01]     "exeErrorDiag": "",
[2025-06-04 18:27:01]     "pilotErrorCode": 0,
[2025-06-04 18:27:01]     "pilotErrorDiag": "",
[2025-06-04 18:27:01]  *** Listing of results directory ***
[2025-06-04 18:27:01] total 391840
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc    495897 Jun  3 22:09 pilot3.tar.gz
[2025-06-04 18:27:01] -rwx------. 1 boinc boinc     37140 Jun  3 22:29 runpilot2-wrapper.sh
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc      5111 Jun  3 22:29 queuedata.json
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc       100 Jun  4 14:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:27:01] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 14:11 run_atlas
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc       105 Jun  4 14:11 job.xml
[2025-06-04 18:27:01] -rw-r--r--. 2 boinc boinc 212602437 Jun  4 14:11 EVNT.45006593._001796.pool.root.1
[2025-06-04 18:27:01] -rw-r--r--. 2 boinc boinc     15093 Jun  4 14:11 start_atlas.sh
[2025-06-04 18:27:01] drwxrwx--x. 2 boinc boinc        68 Jun  4 14:11 shared
[2025-06-04 18:27:01] -rw-r--r--. 2 boinc boinc    508881 Jun  4 14:11 input.tar.gz
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc      6393 Jun  4 14:11 init_data.xml
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc         0 Jun  4 14:11 boinc_lockfile
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc      2524 Jun  4 14:13 pandaJob.out
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc    986811 Jun  4 14:16 agis_schedconf.cvmfs.json
[2025-06-04 18:27:01] drwx------. 4 boinc boinc      4096 Jun  4 14:16 pilot3
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc 181440530 Jun  4 18:25 HITS.45006595._044807.pool.root.1
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc       531 Jun  4 18:25 boinc_task_state.xml
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc        95 Jun  4 18:25 pilot_heartbeat.json
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc      8192 Jun  4 18:26 boinc_mmap_file
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc        28 Jun  4 18:26 wrapper_checkpoint.txt
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc      1018 Jun  4 18:26 memory_monitor_summary.json
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc   1598969 Jun  4 18:26 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc    404501 Jun  4 18:26 log.45006595._044807.job.log.tgz.1
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc      7695 Jun  4 18:26 heartbeat.json
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc      4540 Jun  4 18:27 pilotlog.txt
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc   1286761 Jun  4 18:27 log.45006595._044807.job.log.1
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc       357 Jun  4 18:27 output.list
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc       620 Jun  4 18:27 runtime_log
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc   1710080 Jun  4 18:27 result.tar.gz
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc       657 Jun  4 18:27 YlaNDmRRng7n9Rq4apOajLDm4fhM0noT9bVof3QYDm5rZKDmN2VQJn.diag
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc      8673 Jun  4 18:27 runtime_log.err
[2025-06-04 18:27:01] -rw-r--r--. 1 boinc boinc     20516 Jun  4 18:27 stderr.txt
[2025-06-04 18:27:01] HITS file was successfully produced:
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc 181440530 Jun  4 18:25 shared/HITS.pool.root.1
[2025-06-04 18:27:01]  *** Contents of shared directory: ***
[2025-06-04 18:27:01] total 387000
[2025-06-04 18:27:01] -rw-r--r--. 2 boinc boinc 212602437 Jun  4 14:11 ATLAS.root_0
[2025-06-04 18:27:01] -rw-r--r--. 2 boinc boinc     15093 Jun  4 14:11 start_atlas.sh
[2025-06-04 18:27:01] -rw-r--r--. 2 boinc boinc    508881 Jun  4 14:11 input.tar.gz
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc 181440530 Jun  4 18:25 HITS.pool.root.1
[2025-06-04 18:27:01] -rw-------. 1 boinc boinc   1710080 Jun  4 18:27 result.tar.gz
18:27:03 (8048): run_atlas exited; CPU time 52359.324785
18:27:03 (8048): called boinc_finish(0)

</stderr_txt>
]]>

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