Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:51:47 (4059299): wrapper (7.7.26015): starting
20:51:47 (4059299): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 20:51:48] Arguments: --nthreads 8
[2025-06-03 20:51:48] Threads: 8
[2025-06-03 20:51:48] Checking for CVMFS
[2025-06-03 20:51:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:51:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:51:48] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:51:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:51:48] 2.12.6.0 9858 30706 546388 146762 3 110 16630665 32935937 10922 16776704 1 139992480 99.668 120152549 23155 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 20:51:48] CVMFS is ok
[2025-06-03 20:51:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 20:51:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 20:51:48] Further information can be found at the LHC@home message board.
[2025-06-03 20:51:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:51:48] Checking for apptainer binary...
[2025-06-03 20:51:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:51:48] Running /usr/bin/apptainer --version
[2025-06-03 20:51:48] apptainer version 1.4.1-1.el9
[2025-06-03 20:51:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:51:48] c6-2-11-2.aglt2.org
[2025-06-03 20:51:48] apptainer works
[2025-06-03 20:51:48] Set ATHENA_PROC_NUMBER=8
[2025-06-03 20:51:48] Set ATHENA_CORE_NUMBER=8
[2025-06-03 20:51:48] Starting ATLAS job with PandaID=6678071273
[2025-06-03 20:51:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 21:53:42]  *** The last 200 lines of the pilot log: ***
[2025-06-03 21:53:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 21:53:42]  replicas=None
[2025-06-03 21:53:42]  scope=mc23_13p6TeV
[2025-06-03 21:53:42]  status=None
[2025-06-03 21:53:42]  status_code=0
[2025-06-03 21:53:42]  storage_token=
[2025-06-03 21:53:42]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6678071273/log.45006595._045135.job.log.tgz.1
[2025-06-03 21:53:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c6/f5/log.45006595._045135.job.log.tgz.1
[2025-06-03 21:53:42]  workdir=None
[2025-06-03 21:53:42] ]
[2025-06-03 21:53:42] 2025-06-04 01:53:14,739 | INFO     | transferring file log.45006595._045135.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6678071273/log.45006595._045135.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 21:53:42] 2025-06-04 01:53:14,739 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6678071273/log.45006595._045135.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._045135.job
[2025-06-03 21:53:42] 2025-06-04 01:53:14,758 | INFO     | adding to output.list: log.45006595._045135.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c6/f5/log.45006595._045135.job.log.tg
[2025-06-03 21:53:42] 2025-06-04 01:53:14,759 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 21:53:42] 2025-06-04 01:53:14,759 | INFO     | summary of transferred files:
[2025-06-03 21:53:42] 2025-06-04 01:53:14,759 | INFO     |  -- lfn=log.45006595._045135.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 21:53:42] 2025-06-04 01:53:14,759 | INFO     | stage-out finished correctly
[2025-06-03 21:53:42] 2025-06-04 01:53:15,634 | INFO     | 3681s have passed since pilot start - server update state is 'RUNNING'
[2025-06-03 21:53:42] 2025-06-04 01:53:17,249 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 21:53:42] 2025-06-04 01:53:17,910 | WARNING  | process 4069398 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 21:53:42] 2025-06-04 01:53:17,910 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678071273/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:53:42] 2025-06-04 01:53:17,911 | INFO     | reaping zombies for max 20 seconds
[2025-06-03 21:53:42] 2025-06-04 01:53:17,929 | INFO     | checking for looping job (in state=finished)
[2025-06-03 21:53:42] 2025-06-04 01:53:17,929 | INFO     | using looping job limit: 7200 s
[2025-06-03 21:53:42] 2025-06-04 01:53:18,257 | INFO     | number of running child processes to parent process 4069398: 1
[2025-06-03 21:53:42] 2025-06-04 01:53:18,257 | INFO     | maximum number of monitored processes: 6
[2025-06-03 21:53:42] 2025-06-04 01:53:19,640 | INFO     | job 6678071273 has state=finished
[2025-06-03 21:53:42] 2025-06-04 01:53:19,640 | INFO     | preparing for final server update for job 6678071273 in state='finished'
[2025-06-03 21:53:42] 2025-06-04 01:53:19,700 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-03 21:53:42] 2025-06-04 01:53:19,700 | INFO     | this job has now completed (state=finished)
[2025-06-03 21:53:42] 2025-06-04 01:53:19,700 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 21:53:42] 2025-06-04 01:53:19,700 | INFO     | log transfer has been attempted: DONE
[2025-06-03 21:53:42] 2025-06-04 01:53:19,700 | INFO     | job 6678071273 has finished - writing final server update
[2025-06-03 21:53:42] 2025-06-04 01:53:19,701 | INFO     | total number of processed events: 400 (read)
[2025-06-03 21:53:42] 2025-06-04 01:53:19,715 | INFO     | executing command: lscpu
[2025-06-03 21:53:42] 2025-06-04 01:53:19,801 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 21:53:42] 2025-06-04 01:53:20,760 | INFO     | monitor loop #274: job 0:6678071273 is in state 'finished'
[2025-06-03 21:53:42] 2025-06-04 01:53:20,760 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 21:53:42] 2025-06-04 01:53:21,081 | INFO     | PID=4062921 has CPU usage=13.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-03 21:53:42] 2025-06-04 01:53:21,082 | INFO     | .. there are 15 such processes running
[2025-06-03 21:53:42] 2025-06-04 01:53:22,624 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 21:53:42] 2025-06-04 01:53:22,624 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678071273/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:53:42] 2025-06-04 01:53:22,625 | INFO     | extracted standard info from prmon json
[2025-06-03 21:53:42] 2025-06-04 01:53:22,625 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 21:53:42] 2025-06-04 01:53:22,625 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 21:53:42] 2025-06-04 01:53:22,625 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 21:53:42] 2025-06-04 01:53:22,625 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 21:53:42] 2025-06-04 01:53:22,627 | INFO     | fitting pss+swap vs Time
[2025-06-03 21:53:42] 2025-06-04 01:53:22,627 | INFO     | sum of square deviations: 46147842.0
[2025-06-03 21:53:42] 2025-06-04 01:53:22,627 | INFO     | sum of deviations: 4480306223.000001
[2025-06-03 21:53:42] 2025-06-04 01:53:22,627 | INFO     | mean x: 1749000228.0
[2025-06-03 21:53:42] 2025-06-04 01:53:22,627 | INFO     | mean y: 2156719.6603773586
[2025-06-03 21:53:42] 2025-06-04 01:53:22,627 | INFO     | -- intersect: -169801159447.03754
[2025-06-03 21:53:42] 2025-06-04 01:53:22,628 | INFO     | intersect: -169801159447.03754
[2025-06-03 21:53:42] 2025-06-04 01:53:22,628 | INFO     | chi2: 0.8920609039553596
[2025-06-03 21:53:42] 2025-06-04 01:53:22,628 | INFO     | -- intersect: -169801159447.03754
[2025-06-03 21:53:42] 2025-06-04 01:53:22,628 | INFO     | current memory leak: 97.09 B/s (using 53 data points, chi2=0.89)
[2025-06-03 21:53:42] 2025-06-04 01:53:22,628 | INFO     | ..............................
[2025-06-03 21:53:42] 2025-06-04 01:53:22,628 | INFO     | . Timing measurements:
[2025-06-03 21:53:42] 2025-06-04 01:53:22,628 | INFO     | . get job = 0 s
[2025-06-03 21:53:42] 2025-06-04 01:53:22,628 | INFO     | . initial setup = 2 s
[2025-06-03 21:53:42] 2025-06-04 01:53:22,628 | INFO     | . payload setup = 3 s
[2025-06-03 21:53:42] 2025-06-04 01:53:22,629 | INFO     | . stage-in = 0 s
[2025-06-03 21:53:42] 2025-06-04 01:53:22,629 | INFO     | . payload execution = 3656 s
[2025-06-03 21:53:42] 2025-06-04 01:53:22,629 | INFO     | . stage-out = 0 s
[2025-06-03 21:53:42] 2025-06-04 01:53:22,629 | INFO     | . log creation = 0 s
[2025-06-03 21:53:42] 2025-06-04 01:53:22,629 | INFO     | ..............................
[2025-06-03 21:53:42] 2025-06-04 01:53:22,715 | INFO     | 
[2025-06-03 21:53:42] 2025-06-04 01:53:22,715 | INFO     | job summary report
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | --------------------------------------------------
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | PanDA job id: 6678071273
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | task id: 45006595
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | errors: (none)
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | pilot state: finished 
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | transexitcode: 0
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | exeerrorcode: 0
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | exeerrordiag: 
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | exitcode: 0
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | exitmsg: OK
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | cpuconsumptiontime: 24162 s
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | nevents: 400
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | neventsw: 0
[2025-06-03 21:53:42] 2025-06-04 01:53:22,716 | INFO     | pid: 4069398
[2025-06-03 21:53:42] 2025-06-04 01:53:22,717 | INFO     | pgrp: 4069398
[2025-06-03 21:53:42] 2025-06-04 01:53:22,717 | INFO     | corecount: 8
[2025-06-03 21:53:42] 2025-06-04 01:53:22,717 | INFO     | event service: False
[2025-06-03 21:53:42] 2025-06-04 01:53:22,717 | INFO     | sizes: {0: 2405178, 3: 2405384, 11: 2405412, 3663: 2431065, 3664: 2440006, 3666: 2440062, 3672: 2440360}
[2025-06-03 21:53:42] 2025-06-04 01:53:22,717 | INFO     | --------------------------------------------------
[2025-06-03 21:53:42] 2025-06-04 01:53:22,717 | INFO     | 
[2025-06-03 21:53:42] 2025-06-04 01:53:22,717 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-03 21:53:42] 2025-06-04 01:53:22,730 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,730 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,730 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,730 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,730 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,731 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 21:53:42] 2025-06-04 01:53:22,732 | INFO     | job 6678071273 has completed (purged errors)
[2025-06-03 21:53:42] 2025-06-04 01:53:22,732 | INFO     | overall cleanup function is called
[2025-06-03 21:53:42] 2025-06-04 01:53:23,738 | INFO     | --- collectZombieJob: --- 10, [4069398]
[2025-06-03 21:53:42] 2025-06-04 01:53:23,738 | INFO     | zombie collector waiting for pid 4069398
[2025-06-03 21:53:42] 2025-06-04 01:53:23,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 21:53:42] 2025-06-04 01:53:23,739 | INFO     | collected zombie processes
[2025-06-03 21:53:42] 2025-06-04 01:53:23,739 | INFO     | will attempt to kill all subprocesses of pid=4069398
[2025-06-03 21:53:42] 2025-06-04 01:53:24,040 | INFO     | process IDs to be killed: [4069398] (in reverse order)
[2025-06-03 21:53:42] 2025-06-04 01:53:24,133 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 21:53:42] 2025-06-04 01:53:24,134 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 21:53:42] 2025-06-04 01:53:24,146 | INFO     | did not find any defunct processes belonging to 4069398
[2025-06-03 21:53:42] 2025-06-04 01:53:24,158 | INFO     | did not find any defunct processes belonging to 4069398
[2025-06-03 21:53:42] 2025-06-04 01:53:24,158 | INFO     | ready for new job
[2025-06-03 21:53:42] 2025-06-04 01:53:24,159 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 21:53:42] 2025-06-04 01:53:24,160 | INFO     | **************************************
[2025-06-03 21:53:42] 2025-06-04 01:53:24,160 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 21:53:42] 2025-06-04 01:53:24,160 | INFO     | **************************************
[2025-06-03 21:53:42] 2025-06-04 01:53:24,160 | INFO     | 
[2025-06-03 21:53:42] 2025-06-04 01:53:24,177 | INFO     | architecture information:
[2025-06-03 21:53:42] 2025-06-04 01:53:24,178 | INFO     | executing command: cat /etc/os-release
[2025-06-03 21:53:42] 2025-06-04 01:53:24,191 | INFO     | cat /etc/os-release:
[2025-06-03 21:53:42] NAME="CentOS Linux"
[2025-06-03 21:53:42] VERSION="7 (Core)"
[2025-06-03 21:53:42] ID="centos"
[2025-06-03 21:53:42] ID_LIKE="rhel fedora"
[2025-06-03 21:53:42] VERSION_ID="7"
[2025-06-03 21:53:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 21:53:42] ANSI_COLOR="0;31"
[2025-06-03 21:53:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 21:53:42] HOME_URL="https://www.centos.org/"
[2025-06-03 21:53:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 21:53:42] 
[2025-06-03 21:53:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 21:53:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 21:53:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 21:53:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 21:53:42] 
[2025-06-03 21:53:42] 2025-06-04 01:53:24,191 | INFO     | **************************************
[2025-06-03 21:53:42] 2025-06-04 01:53:24,694 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-03 21:53:42] 2025-06-04 01:53:24,709 | INFO     | sufficient remaining disk space (95593431040 B)
[2025-06-03 21:53:42] 2025-06-04 01:53:24,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 21:53:42] 2025-06-04 01:53:24,710 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 21:53:42] 2025-06-04 01:53:24,710 | INFO     | update_server=False
[2025-06-03 21:53:42] 2025-06-04 01:53:24,710 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 21:53:42] 2025-06-04 01:53:24,710 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:53:42] 2025-06-04 01:53:24,710 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:53:42] 2025-06-04 01:53:24,711 | INFO     | aborting loop
[2025-06-03 21:53:42] 2025-06-04 01:53:24,951 | INFO     | all data control threads have been joined
[2025-06-03 21:53:42] 2025-06-04 01:53:25,092 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 21:53:42] 2025-06-04 01:53:25,093 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 21:53:42] 2025-06-04 01:53:25,093 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 21:53:42] 2025-06-04 01:53:25,385 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 21:53:42] 2025-06-04 01:53:25,488 | INFO     | all job control threads have been joined
[2025-06-03 21:53:42] 2025-06-04 01:53:25,715 | INFO     | [job] queue monitor thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:25,716 | INFO     | [job] retrieve thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:25,716 | INFO     | [job] job monitor thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:25,775 | INFO     | all payload control threads have been joined
[2025-06-03 21:53:42] 2025-06-04 01:53:25,957 | INFO     | [data] control thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:26,123 | INFO     | [payload] validate_post thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:26,182 | INFO     | [job] validate thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:26,409 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:26,490 | INFO     | [job] control thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:26,595 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:26,602 | INFO     | [data] copytool_in thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:26,780 | INFO     | [payload] control thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:26,837 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:26,865 | INFO     | [payload] failed_post thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:27,391 | INFO     | [data] copytool_out thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:27,846 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 21:53:42] 2025-06-04 01:53:31,852 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:34,898 | INFO     | job.realtimelogging is not enabled
[2025-06-03 21:53:42] 2025-06-04 01:53:35,903 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 21:53:42] 2025-06-04 01:53:36,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139936267122496)>', '<ExcThread(monitor, started 139935755507456)>']
[2025-06-03 21:53:42] 2025-06-04 01:53:37,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 21:53:42] 2025-06-04 01:53:37,149 | INFO     | [monitor] control thread has ended
[2025-06-03 21:53:42] 2025-06-04 01:53:42,008 | INFO     | all workflow threads have been joined
[2025-06-03 21:53:42] 2025-06-04 01:53:42,008 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 21:53:42] 2025-06-04 01:53:42,008 | INFO     | traces error code: 0
[2025-06-03 21:53:42] 2025-06-04 01:53:42,009 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 21:53:42] 2025-06-04 01:53:42,133 [wrapper] ==== pilot stdout END ====
[2025-06-03 21:53:42] 2025-06-04 01:53:42,135 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 21:53:42] 2025-06-04 01:53:42,137 [wrapper] pilotpid: 4062921
[2025-06-03 21:53:42] 2025-06-04 01:53:42,140 [wrapper] Pilot exit status: 0
[2025-06-03 21:53:42] 2025-06-04 01:53:42,148 [wrapper] pandaids: 6678071273
[2025-06-03 21:53:42] 2025-06-04 01:53:42,219 [wrapper] cleanup supervisor_pilot   73335 4062922
[2025-06-03 21:53:42] 2025-06-04 01:53:42,221 [wrapper] Test setup, not cleaning
[2025-06-03 21:53:42] 2025-06-04 01:53:42,222 [wrapper] apfmon messages muted
[2025-06-03 21:53:42] 2025-06-04 01:53:42,224 [wrapper] ==== wrapper stdout END ====
[2025-06-03 21:53:42] 2025-06-04 01:53:42,225 [wrapper] ==== wrapper stderr END ====
[2025-06-03 21:53:42]  *** Error codes and diagnostics ***
[2025-06-03 21:53:42]     "exeErrorCode": 0,
[2025-06-03 21:53:42]     "exeErrorDiag": "",
[2025-06-03 21:53:42]     "pilotErrorCode": 0,
[2025-06-03 21:53:42]     "pilotErrorDiag": "",
[2025-06-03 21:53:42]  *** Listing of results directory ***
[2025-06-03 21:53:42] total 383212
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 16:36 pilot3.tar.gz
[2025-06-03 21:53:42] -rwx------. 1 boincer umatlas     37140 Jun  3 16:40 runpilot2-wrapper.sh
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 16:40 queuedata.json
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas       100 Jun  3 20:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 21:53:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 20:51 run_atlas
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas       105 Jun  3 20:51 job.xml
[2025-06-03 21:53:42] -rw-r--r--. 2 boincer umatlas 212622468 Jun  3 20:51 EVNT.45006593._001811.pool.root.1
[2025-06-03 21:53:42] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 20:51 shared
[2025-06-03 21:53:42] -rw-r--r--. 2 boincer umatlas    508876 Jun  3 20:51 input.tar.gz
[2025-06-03 21:53:42] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 20:51 start_atlas.sh
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas         0 Jun  3 20:51 boinc_lockfile
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas      2522 Jun  3 20:51 pandaJob.out
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas    986069 Jun  3 20:51 agis_schedconf.cvmfs.json
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas   1603667 Jun  3 20:51 agis_ddmendpoints.agis.ALL.json
[2025-06-03 21:53:42] drwx------. 4 boincer umatlas      4096 Jun  3 20:51 pilot3
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas      6856 Jun  3 21:49 init_data.xml
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas 174644574 Jun  3 21:52 HITS.45006595._045135.pool.root.1
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas       529 Jun  3 21:52 boinc_task_state.xml
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas        95 Jun  3 21:53 pilot_heartbeat.json
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas      1032 Jun  3 21:53 memory_monitor_summary.json
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas    280317 Jun  3 21:53 log.45006595._045135.job.log.tgz.1
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas      7709 Jun  3 21:53 heartbeat.json
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 21:53 boinc_mmap_file
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas      4425 Jun  3 21:53 pilotlog.txt
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas        27 Jun  3 21:53 wrapper_checkpoint.txt
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas    372877 Jun  3 21:53 log.45006595._045135.job.log.1
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas       357 Jun  3 21:53 output.list
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas       620 Jun  3 21:53 runtime_log
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas    675840 Jun  3 21:53 result.tar.gz
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas      8664 Jun  3 21:53 runtime_log.err
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas       651 Jun  3 21:53 fy7KDm3bng7n9Rq4apOajLDm4fhM0noT9bVof3QYDmeuZKDmaj71In.diag
[2025-06-03 21:53:42] -rw-r--r--. 1 boincer umatlas     21804 Jun  3 21:53 stderr.txt
[2025-06-03 21:53:42] HITS file was successfully produced:
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas 174644574 Jun  3 21:52 shared/HITS.pool.root.1
[2025-06-03 21:53:42]  *** Contents of shared directory: ***
[2025-06-03 21:53:42] total 379372
[2025-06-03 21:53:42] -rw-r--r--. 2 boincer umatlas 212622468 Jun  3 20:51 ATLAS.root_0
[2025-06-03 21:53:42] -rw-r--r--. 2 boincer umatlas    508876 Jun  3 20:51 input.tar.gz
[2025-06-03 21:53:42] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 20:51 start_atlas.sh
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas 174644574 Jun  3 21:52 HITS.pool.root.1
[2025-06-03 21:53:42] -rw-------. 1 boincer umatlas    675840 Jun  3 21:53 result.tar.gz
21:53:44 (4059299): run_atlas exited; CPU time 24287.666230
21:53:44 (4059299): called boinc_finish(0)

</stderr_txt>
]]>

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