Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 11:03:27 (13320): Detected: vboxwrapper 26206
2025-06-04 11:03:27 (13320): Detected: BOINC client v8.0.4
2025-06-04 11:03:27 (13320): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-06-04 11:03:27 (13320): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 11:03:28 (13320): Create VM. (boinc_93fabf7743b69149, slot#35)
2025-06-04 11:03:29 (13320): Setting Memory Size for VM. (4800MB)
2025-06-04 11:03:29 (13320): Setting CPU Count for VM. (8)
2025-06-04 11:03:29 (13320): Setting Chipset Options for VM.
2025-06-04 11:03:29 (13320): Setting Graphics Controller Options for VM.
2025-06-04 11:03:30 (13320): Setting Boot Options for VM.
2025-06-04 11:03:30 (13320): Setting Network Configuration for NAT.
2025-06-04 11:03:30 (13320): Enabling VM Network Access.
2025-06-04 11:03:30 (13320): Disabling USB Support for VM.
2025-06-04 11:03:31 (13320): Disabling COM Port Support for VM.
2025-06-04 11:03:31 (13320): Disabling LPT Port Support for VM.
2025-06-04 11:03:31 (13320): Disabling Audio Support for VM.
2025-06-04 11:03:31 (13320): Disabling Clipboard Support for VM.
2025-06-04 11:03:32 (13320): Disabling Drag and Drop Support for VM.
2025-06-04 11:03:32 (13320): Adding storage controller(s) to VM.
2025-06-04 11:03:32 (13320): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 11:03:33 (13320): Adding VirtualBox Guest Additions to VM.
2025-06-04 11:03:33 (13320): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 11:03:33 (13320): forwarding host port 55093 to guest port 80
2025-06-04 11:03:33 (13320): Enabling remote desktop for VM.
2025-06-04 11:03:34 (13320): Required extension pack not installed, remote desktop not enabled.
2025-06-04 11:03:34 (13320): Enabling shared directory for VM.
2025-06-04 11:03:34 (13320): Starting VM using VBoxManage interface. (boinc_93fabf7743b69149, slot#35)
2025-06-04 11:03:41 (13320): Successfully started VM. (PID = '1788')
2025-06-04 11:03:41 (13320): Reporting VM Process ID to BOINC.
2025-06-04 11:03:41 (13320): Guest Log: BIOS: VirtualBox 7.0.20
2025-06-04 11:03:41 (13320): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 11:03:41 (13320): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 11:03:41 (13320): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 11:03:41 (13320): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 11:03:41 (13320): Detected: Web Application Enabled (http://localhost:55093)
2025-06-04 11:03:41 (13320): Preference change detected
2025-06-04 11:03:41 (13320): Setting CPU throttle for VM. (100%)
2025-06-04 11:03:41 (13320): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 11:03:43 (13320): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 11:03:43 (13320): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 11:03:46 (13320): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 11:03:46 (13320): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 11:03:46 (13320): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 11:03:52 (13320): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 11:03:52 (13320): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 11:03:59 (13320): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 11:03:59 (13320): Guest Log: 00:00:00.000246 main     Log opened 2025-06-04T11:03:57.441485000Z
2025-06-04 11:03:59 (13320): Guest Log: 00:00:00.000433 main     OS Product: Linux
2025-06-04 11:03:59 (13320): Guest Log: 00:00:00.000489 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 11:03:59 (13320): Guest Log: 00:00:00.000550 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 11:03:59 (13320): Guest Log: 00:00:00.000600 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 11:03:59 (13320): Guest Log: 00:00:00.000601 main     Process ID: 1370
2025-06-04 11:03:59 (13320): Guest Log: 00:00:00.000602 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 11:03:59 (13320): Guest Log: 00:00:00.001915 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 11:03:59 (13320): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 11:03:59 (13320): Guest Log: [INFO] Mounting shared directory
2025-06-04 11:03:59 (13320): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 11:04:04 (13320): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 11:04:04 (13320): Guest Log: [INFO] Detected branch: prod
2025-06-04 11:04:04 (13320): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 11:04:04 (13320): Guest Log: Copying input files
2025-06-04 11:04:06 (13320): Guest Log: Copied input files into RunAtlas.
2025-06-04 11:04:06 (13320): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 11:04:06 (13320): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 11:04:06 (13320): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 11:04:06 (13320): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 11:04:09 (13320): Guest Log: 00:00:10.004818 timesync vgsvcTimeSyncWorker: Radical guest time change: -35 988 532 843 000ns (GuestNow=1 748 999 048 912 577 000 ns GuestLast=1 749 035 037 445 420 000 ns fSetTimeLastLoop=true )
2025-06-04 11:04:14 (13320): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 11:04:14 (13320): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 11:04:14 (13320): Guest Log: 2.6.3.0 1646 0 32032 146762 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 11:04:16 (13320): Guest Log: copied the webapp to /var/www
2025-06-04 11:04:16 (13320): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-04 11:04:16 (13320): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-04 11:04:16 (13320): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 11:04:16 (13320): Guest Log:  *** Starting ATLAS job. (PandaID=6678071239 taskID=45006595) ***
2025-06-04 11:12:26 (13320): Preference change detected
2025-06-04 11:12:26 (13320): Setting CPU throttle for VM. (100%)
2025-06-04 11:12:26 (13320): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 11:21:33 (13320): Preference change detected
2025-06-04 11:21:33 (13320): Setting CPU throttle for VM. (100%)
2025-06-04 11:21:34 (13320): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 12:24:39 (13320): Preference change detected
2025-06-04 12:24:39 (13320): Setting CPU throttle for VM. (100%)
2025-06-04 12:24:39 (13320): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 12:27:11 (13320): Preference change detected
2025-06-04 12:27:11 (13320): Setting CPU throttle for VM. (100%)
2025-06-04 12:27:11 (13320): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 12:43:48 (13320): Status Report: Elapsed Time: '6000.000000'
2025-06-04 12:43:48 (13320): Status Report: CPU Time: '41707.828125'
2025-06-04 12:54:36 (13320): Preference change detected
2025-06-04 12:54:36 (13320): Setting CPU throttle for VM. (100%)
2025-06-04 12:54:36 (13320): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 13:04:40 (13320): Guest Log:  *** Job finished ***
2025-06-04 13:04:40 (13320): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:25,991 | INFO     | [data] queue_monitor thread has finished
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:30,819 | INFO     | job.realtimelogging is not enabled
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:31,820 | INFO     | [payload] run_realtimelog thread has finished
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:33,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140136114480960)>', '<ExcThread(monitor, started 140135379232512)>']
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:33,470 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:33,470 | INFO     | [monitor] control thread has ended
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,277 | INFO     | all workflow threads have been joined
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,278 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,278 | INFO     | traces error code: 0
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,278 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,411 [wrapper] ==== pilot stdout END ====
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,418 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,425 [wrapper] pilotpid: 6002
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,431 [wrapper] Pilot exit status: 0
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,513 [wrapper] pandaids: 6678071239
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,562 [wrapper] cleanup supervisor_pilot  3564 6003
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,568 [wrapper] Test setup, not cleaning
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,575 [wrapper] apfmon messages muted
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,582 [wrapper] ==== wrapper stdout END ====
2025-06-04 13:04:40 (13320): Guest Log: 2025-06-04 03:04:38,589 [wrapper] ==== wrapper stderr END ====
2025-06-04 13:04:40 (13320): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 13:04:40 (13320): Guest Log:     "exeErrorCode": 0,
2025-06-04 13:04:40 (13320): Guest Log:     "exeErrorDiag": "",
2025-06-04 13:04:40 (13320): Guest Log:     "pilotErrorCode": 0,
2025-06-04 13:04:40 (13320): Guest Log:     "pilotErrorDiag": "",
2025-06-04 13:04:40 (13320): Guest Log:  *** Listing of results directory ***
2025-06-04 13:04:40 (13320): Guest Log: total 179988
2025-06-04 13:04:40 (13320): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 20:36 pilot3.tar.gz
2025-06-04 13:04:40 (13320): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 20:39 queuedata.json
2025-06-04 13:04:40 (13320): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 20:39 runpilot2-wrapper.sh
2025-06-04 13:04:40 (13320): Guest Log: -rwxr-xr-x. 1 atlas atlas      9334 Jun  4 01:04 init_data.xml
2025-06-04 13:04:40 (13320): Guest Log: -rwxr-xr-x. 1 atlas atlas    508883 Jun  4 01:04 input.tar.gz
2025-06-04 13:04:40 (13320): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 01:04 start_atlas.sh
2025-06-04 13:04:40 (13320): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 01:04 EVNT.45006593._001809.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 13:04:40 (13320): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  4 01:04 pandaJob.out
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas    986069 Jun  4 01:05 agis_schedconf.cvmfs.json
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  4 01:05 agis_ddmendpoints.agis.ALL.json
2025-06-04 13:04:40 (13320): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 01:05 pilot3
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 03:03 pilot_heartbeat.json
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas 178675008 Jun  4 03:03 HITS.45006595._045101.pool.root.1
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas      1032 Jun  4 03:04 memory_monitor_summary.json
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas    326522 Jun  4 03:04 log.45006595._045101.job.log.tgz.1
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas      7730 Jun  4 03:04 heartbeat.json
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas      4608 Jun  4 03:04 pilotlog.txt
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas    607646 Jun  4 03:04 log.45006595._045101.job.log.1
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 03:04 output.list
2025-06-04 13:04:40 (13320): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 03:04 runtime_log
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas    952320 Jun  4 03:04 result.tar.gz
2025-06-04 13:04:40 (13320): Guest Log: -rw-r--r--. 1 atlas atlas      8577 Jun  4 03:04 runtime_log.err
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas       648 Jun  4 03:04 Os7LDmabng7n9Rq4apOajLDm4fhM0noT9bVof3QYDmVuZKDmXg3hDo.diag
2025-06-04 13:04:40 (13320): Guest Log: Looking for outputfile HITS.45006595._045101.pool.root.1
2025-06-04 13:04:40 (13320): Guest Log: HITS file was successfully produced
2025-06-04 13:04:40 (13320): Guest Log: -rw-------. 1 atlas atlas 178675008 Jun  4 03:03 /home/atlas/RunAtlas/HITS.45006595._045101.pool.root.1
2025-06-04 13:04:40 (13320): Guest Log: Successfully finished the ATLAS job!
2025-06-04 13:04:40 (13320): Guest Log: Copying the results back to the shared directory!
2025-06-04 13:04:41 (13320): Guest Log:  *** Contents of shared directory: ***
2025-06-04 13:04:41 (13320): Guest Log: total 384336
2025-06-04 13:04:41 (13320): Guest Log: -rwxrwxrwx. 1 root root 213386422 Jun  4 01:03 ATLAS.root_0
2025-06-04 13:04:41 (13320): Guest Log: -rwxrwxrwx. 1 root root 178675008 Jun  4 03:04 HITS.pool.root.1
2025-06-04 13:04:41 (13320): Guest Log: -rwxrwxrwx. 1 root root      9334 Jun  4 01:03 init_data.xml
2025-06-04 13:04:41 (13320): Guest Log: -rwxrwxrwx. 1 root root    508883 Jun  4 01:01 input.tar.gz
2025-06-04 13:04:41 (13320): Guest Log: -rwxrwxrwx. 1 root root    952320 Jun  4 03:04 result.tar.gz
2025-06-04 13:04:41 (13320): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 01:01 start_atlas.sh
2025-06-04 13:04:41 (13320): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 13:04:41 (13320): VM Completion File Detected.
2025-06-04 13:04:41 (13320): Powering off VM.
2025-06-04 13:04:42 (13320): Successfully stopped VM.
2025-06-04 13:04:42 (13320): Deregistering VM. (boinc_93fabf7743b69149, slot#35)
2025-06-04 13:04:42 (13320): Removing network bandwidth throttle group from VM.
2025-06-04 13:04:42 (13320): Removing VM from VirtualBox.
13:04:48 (13320): called boinc_finish(0)

</stderr_txt>
]]>

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