Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:59:11 (31728): wrapper (7.7.26015): starting
13:59:11 (31728): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 13:59:11] Arguments: --nthreads 8
[2025-06-04 13:59:11] Threads: 8
[2025-06-04 13:59:11] Checking for CVMFS
[2025-06-04 13:59:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:59:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:59:11] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:59:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:59:12] 2.11.2.0 16701 33291 100404 146779 0 201 17145515 25165824 3708 130560 0 19221068 99.834 19450916 2540 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 13:59:12] CVMFS is ok
[2025-06-04 13:59:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:59:12] Checking for apptainer binary...
[2025-06-04 13:59:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:59:12] Running /usr/bin/apptainer --version
[2025-06-04 13:59:12] apptainer version 1.3.2-1.el7
[2025-06-04 13:59:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:59:14] cg-vwn475.simple-grid.lan
[2025-06-04 13:59:14] apptainer works
[2025-06-04 13:59:14] Set ATHENA_PROC_NUMBER=8
[2025-06-04 13:59:14] Set ATHENA_CORE_NUMBER=8
[2025-06-04 13:59:14] Starting ATLAS job with PandaID=6678070955
[2025-06-04 13:59:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:41:55]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:41:55] 2025-06-04 15:30:52,551 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6678070955/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 18:41:55] 2025-06-04 15:30:52,552 | INFO     | extracted standard info from prmon json
[2025-06-04 18:41:55] 2025-06-04 15:30:52,552 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:41:55] 2025-06-04 15:30:52,552 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:41:55] 2025-06-04 15:30:52,552 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:41:55] 2025-06-04 15:30:52,552 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:41:55] 2025-06-04 15:30:52,557 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:41:55] 2025-06-04 15:30:52,558 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 18:41:55] 2025-06-04 15:30:52,559 | INFO     | sum of deviations: 84864085781.0
[2025-06-04 18:41:55] 2025-06-04 15:30:52,559 | INFO     | mean x: 1749044758.0
[2025-06-04 18:41:55] 2025-06-04 15:30:52,559 | INFO     | mean y: 2417293.512315271
[2025-06-04 18:41:55] 2025-06-04 15:30:52,559 | INFO     | -- intersect: -57220350661.57188
[2025-06-04 18:41:55] 2025-06-04 15:30:52,560 | INFO     | intersect: -57220350661.57188
[2025-06-04 18:41:55] 2025-06-04 15:30:52,560 | INFO     | chi2: 6.208466276875738
[2025-06-04 18:41:55] 2025-06-04 15:30:52,561 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 18:41:55] 2025-06-04 15:30:52,562 | INFO     | sum of deviations: 95972957736.0
[2025-06-04 18:41:55] 2025-06-04 15:30:52,562 | INFO     | mean x: 1749044605.5
[2025-06-04 18:41:55] 2025-06-04 15:30:52,562 | INFO     | mean y: 2426134.5454545454
[2025-06-04 18:41:55] 2025-06-04 15:30:52,562 | INFO     | -- intersect: -69738361489.80234
[2025-06-04 18:41:55] 2025-06-04 15:30:52,562 | INFO     | intersect: -69738361489.80234
[2025-06-04 18:41:55] 2025-06-04 15:30:52,563 | INFO     | chi2: 5.482784270748842
[2025-06-04 18:41:55] 2025-06-04 15:30:52,563 | INFO     | current chi2=5.482784270748842 (change=11.688587386385521 %)
[2025-06-04 18:41:55] 2025-06-04 15:30:52,563 | INFO     | right removable region: 197
[2025-06-04 18:41:55] 2025-06-04 15:30:52,563 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 18:41:55] 2025-06-04 15:30:52,565 | INFO     | sum of deviations: 18464345925.500008
[2025-06-04 18:41:55] 2025-06-04 15:30:52,565 | INFO     | mean x: 1749044910.5
[2025-06-04 18:41:55] 2025-06-04 15:30:52,565 | INFO     | mean y: 2471381.51010101
[2025-06-04 18:41:55] 2025-06-04 15:30:52,565 | INFO     | -- intersect: -13415039996.105867
[2025-06-04 18:41:55] 2025-06-04 15:30:52,565 | INFO     | intersect: -13415039996.105867
[2025-06-04 18:41:55] 2025-06-04 15:30:52,566 | INFO     | chi2: 1.862824581015765
[2025-06-04 18:41:55] 2025-06-04 15:30:52,566 | INFO     | current chi2=1.862824581015765 (change=69.99541435935468 %)
[2025-06-04 18:41:55] 2025-06-04 15:30:52,566 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 18:41:55] 2025-06-04 15:30:52,567 | INFO     | sum of deviations: -11375806613.0
[2025-06-04 18:41:55] 2025-06-04 15:30:52,568 | INFO     | mean x: 1749045063.0
[2025-06-04 18:41:55] 2025-06-04 15:30:52,568 | INFO     | mean y: 2496793.6321243523
[2025-06-04 18:41:55] 2025-06-04 15:30:52,568 | INFO     | -- intersect: 8928242462.076609
[2025-06-04 18:41:55] 2025-06-04 15:30:52,568 | INFO     | intersect: 8928242462.076609
[2025-06-04 18:41:55] 2025-06-04 15:30:52,568 | INFO     | chi2: 0.8337147092071561
[2025-06-04 18:41:55] 2025-06-04 15:30:52,568 | INFO     | current chi2=0.8337147092071561 (change=55.24459373664984 %)
[2025-06-04 18:41:55] 2025-06-04 15:30:52,569 | INFO     | sum of square deviations: 2060343747.0
[2025-06-04 18:41:55] 2025-06-04 15:30:52,570 | INFO     | sum of deviations: -15473446385.5
[2025-06-04 18:41:55] 2025-06-04 15:30:52,570 | INFO     | mean x: 1749045215.5
[2025-06-04 18:41:55] 2025-06-04 15:30:52,570 | INFO     | mean y: 2500513.8031914895
[2025-06-04 18:41:55] 2025-06-04 15:30:52,570 | INFO     | -- intersect: 13138054912.073484
[2025-06-04 18:41:55] 2025-06-04 15:30:52,570 | INFO     | intersect: 13138054912.073484
[2025-06-04 18:41:55] 2025-06-04 15:30:52,571 | INFO     | chi2: 0.8032552232818209
[2025-06-04 18:41:55] 2025-06-04 15:30:52,571 | INFO     | current chi2=0.8032552232818209 (change=3.653466298357803 %)
[2025-06-04 18:41:55] 2025-06-04 15:30:52,571 | INFO     | left removable region: 30
[2025-06-04 18:41:55] 2025-06-04 15:30:52,571 | INFO     | sum of square deviations: 1444149868.0
[2025-06-04 18:41:55] 2025-06-04 15:30:52,578 | INFO     | sum of deviations: -4714263122.0
[2025-06-04 18:41:55] 2025-06-04 15:30:52,578 | INFO     | mean x: 1749045490.0
[2025-06-04 18:41:55] 2025-06-04 15:30:52,578 | INFO     | mean y: 2514378.994011976
[2025-06-04 18:41:55] 2025-06-04 15:30:52,578 | INFO     | -- intersect: 5712074608.796574
[2025-06-04 18:41:55] 2025-06-04 15:30:52,578 | INFO     | intersect: 5712074608.796574
[2025-06-04 18:41:55] 2025-06-04 15:30:52,579 | INFO     | chi2: 0.006690521550108173
[2025-06-04 18:41:55] 2025-06-04 15:30:52,579 | INFO     | -- intersect: 5712074608.796574
[2025-06-04 18:41:55] 2025-06-04 15:30:52,579 | INFO     | current memory leak: -3.26 B/s (using 167 data points, chi2=0.01)
[2025-06-04 18:41:55] 2025-06-04 15:30:52,580 | INFO     | ..............................
[2025-06-04 18:41:55] 2025-06-04 15:30:52,580 | INFO     | . Timing measurements:
[2025-06-04 18:41:55] 2025-06-04 15:30:52,580 | INFO     | . get job = 0 s
[2025-06-04 18:41:55] 2025-06-04 15:30:52,580 | INFO     | . initial setup = 2 s
[2025-06-04 18:41:55] 2025-06-04 15:30:52,580 | INFO     | . payload setup = 44 s
[2025-06-04 18:41:55] 2025-06-04 15:30:52,580 | INFO     | . stage-in = 0 s
[2025-06-04 18:41:55] 2025-06-04 15:30:52,580 | INFO     | . payload execution = 12439 s
[2025-06-04 18:41:55] 2025-06-04 15:30:52,581 | INFO     | . stage-out = 6 s
[2025-06-04 18:41:55] 2025-06-04 15:30:52,581 | INFO     | . log creation = 1 s
[2025-06-04 18:41:55] 2025-06-04 15:30:52,581 | INFO     | ..............................
[2025-06-04 18:41:55] 2025-06-04 15:30:53,183 | INFO     | 
[2025-06-04 18:41:55] 2025-06-04 15:30:53,184 | INFO     | job summary report
[2025-06-04 18:41:55] 2025-06-04 15:30:53,184 | INFO     | --------------------------------------------------
[2025-06-04 18:41:55] 2025-06-04 15:30:53,184 | INFO     | PanDA job id: 6678070955
[2025-06-04 18:41:55] 2025-06-04 15:30:53,184 | INFO     | task id: 45006595
[2025-06-04 18:41:55] 2025-06-04 15:30:53,184 | INFO     | errors: (none)
[2025-06-04 18:41:55] 2025-06-04 15:30:53,184 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:41:55] 2025-06-04 15:30:53,184 | INFO     | pilot state: finished 
[2025-06-04 18:41:55] 2025-06-04 15:30:53,184 | INFO     | transexitcode: 0
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | exeerrorcode: 0
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | exeerrordiag: 
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | exitcode: 0
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | exitmsg: OK
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | cpuconsumptiontime: 45572 s
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | nevents: 400
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | neventsw: 0
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | pid: 25460
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | pgrp: 25460
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | corecount: 8
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | event service: False
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | sizes: {0: 2397343, 11: 2397343, 22: 2397371, 33: 2397399, 39: 2397661, 43: 2397689, 12489: 2426889, 12496: 2435832, 12497: 2435888, 12596: 2436058}
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | --------------------------------------------------
[2025-06-04 18:41:55] 2025-06-04 15:30:53,185 | INFO     | 
[2025-06-04 18:41:55] 2025-06-04 15:30:53,186 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-06-04 18:41:55] 2025-06-04 15:30:53,709 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,710 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,710 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,710 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,710 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,710 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,710 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,710 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,710 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,711 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,711 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,711 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,711 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,711 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,711 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,711 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,711 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,711 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:41:55] 2025-06-04 15:30:53,711 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,711 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:41:55] 2025-06-04 15:30:53,711 | INFO     | job 6678070955 has completed (purged errors)
[2025-06-04 18:41:55] 2025-06-04 15:30:53,712 | INFO     | overall cleanup function is called
[2025-06-04 18:41:55] 2025-06-04 15:30:54,720 | INFO     | --- collectZombieJob: --- 10, [25460]
[2025-06-04 18:41:55] 2025-06-04 15:30:54,721 | INFO     | zombie collector waiting for pid 25460
[2025-06-04 18:41:55] 2025-06-04 15:30:54,721 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:41:55] 2025-06-04 15:30:54,721 | INFO     | collected zombie processes
[2025-06-04 18:41:55] 2025-06-04 15:30:54,721 | INFO     | will attempt to kill all subprocesses of pid=25460
[2025-06-04 18:41:55] 2025-06-04 15:30:54,852 | INFO     | process IDs to be killed: [25460] (in reverse order)
[2025-06-04 18:41:55] 2025-06-04 15:30:55,891 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:41:55] 2025-06-04 15:30:55,891 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:41:55] 2025-06-04 15:30:55,895 | INFO     | did not find any defunct processes belonging to 25460
[2025-06-04 18:41:55] 2025-06-04 15:30:55,898 | INFO     | did not find any defunct processes belonging to 25460
[2025-06-04 18:41:55] 2025-06-04 15:30:55,899 | INFO     | ready for new job
[2025-06-04 18:41:55] 2025-06-04 15:30:55,899 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:41:55] 2025-06-04 15:30:55,901 | INFO     | **************************************
[2025-06-04 18:41:55] 2025-06-04 15:30:55,901 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:41:55] 2025-06-04 15:30:55,901 | INFO     | **************************************
[2025-06-04 18:41:55] 2025-06-04 15:30:55,904 | INFO     | 
[2025-06-04 18:41:55] 2025-06-04 15:30:55,905 | INFO     | pilot is running in a VM
[2025-06-04 18:41:55] 2025-06-04 15:30:55,905 | INFO     | architecture information:
[2025-06-04 18:41:55] 2025-06-04 15:30:55,927 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:41:55] 2025-06-04 15:30:56,250 | INFO     | cat /etc/os-release:
[2025-06-04 18:41:55] NAME="CentOS Linux"
[2025-06-04 18:41:55] VERSION="7 (Core)"
[2025-06-04 18:41:55] ID="centos"
[2025-06-04 18:41:55] ID_LIKE="rhel fedora"
[2025-06-04 18:41:55] VERSION_ID="7"
[2025-06-04 18:41:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:41:55] ANSI_COLOR="0;31"
[2025-06-04 18:41:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:41:55] HOME_URL="https://www.centos.org/"
[2025-06-04 18:41:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:41:55] 
[2025-06-04 18:41:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:41:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:41:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:41:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:41:55] 
[2025-06-04 18:41:55] 2025-06-04 15:30:56,250 | INFO     | **************************************
[2025-06-04 18:41:55] 2025-06-04 15:30:56,754 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-06-04 18:41:55] 2025-06-04 15:30:56,974 | INFO     | sufficient remaining disk space (496492347392 B)
[2025-06-04 18:41:55] 2025-06-04 15:30:56,975 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:41:55] 2025-06-04 15:30:56,975 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:41:55] 2025-06-04 15:30:56,975 | INFO     | update_server=False
[2025-06-04 18:41:55] 2025-06-04 15:30:56,975 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:41:55] 2025-06-04 15:30:56,980 | INFO     | all data control threads have been joined
[2025-06-04 18:41:55] 2025-06-04 15:30:57,710 | INFO     | all job control threads have been joined
[2025-06-04 18:41:55] 2025-06-04 15:30:57,753 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:41:55] 2025-06-04 15:30:57,845 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:41:55] 2025-06-04 15:30:57,846 | INFO     | aborting loop
[2025-06-04 18:41:55] 2025-06-04 15:30:57,876 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:41:55] 2025-06-04 15:30:57,877 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:41:55] 2025-06-04 15:30:57,877 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:41:55] 2025-06-04 15:30:57,981 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:57,987 | INFO     | [data] control thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:58,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:41:55] 2025-06-04 15:30:58,161 | INFO     | all payload control threads have been joined
[2025-06-04 18:41:55] 2025-06-04 15:30:58,318 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:58,459 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:58,624 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:58,716 | INFO     | [job] control thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:58,760 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:58,851 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:58,921 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:41:55] 2025-06-04 15:30:59,157 | INFO     | [job] validate thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:59,167 | INFO     | [payload] control thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:59,170 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:59,179 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:59,188 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:30:59,390 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:31:00,030 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:31:02,930 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:41:55] 2025-06-04 15:31:03,396 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140069873448768)>', '<ExcThread(monitor, started 140069570582272)>']
[2025-06-04 18:41:55] 2025-06-04 15:31:03,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:41:55] 2025-06-04 15:31:03,913 | INFO     | [monitor] control thread has ended
[2025-06-04 18:41:55] 2025-06-04 15:31:08,422 | INFO     | all workflow threads have been joined
[2025-06-04 18:41:55] 2025-06-04 15:31:08,423 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:41:55] 2025-06-04 15:31:08,423 | INFO     | traces error code: 0
[2025-06-04 18:41:55] 2025-06-04 15:31:08,423 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:41:55] 2025-06-04 15:31:08,870 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:41:55] 2025-06-04 15:31:08,977 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:41:55] 2025-06-04 15:31:09,080 [wrapper] pilotpid: 5522
[2025-06-04 18:41:55] 2025-06-04 15:31:09,170 [wrapper] Pilot exit status: 0
[2025-06-04 18:41:55] 2025-06-04 15:31:09,647 [wrapper] pandaids: 6678070955
[2025-06-04 18:41:55] 2025-06-04 15:31:10,384 [wrapper] cleanup supervisor_pilot 19056 5523
[2025-06-04 18:41:55] 2025-06-04 15:31:10,435 [wrapper] Test setup, not cleaning
[2025-06-04 18:41:55] 2025-06-04 15:31:10,507 [wrapper] apfmon messages muted
[2025-06-04 18:41:55] 2025-06-04 15:31:10,586 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:41:55] 2025-06-04 15:31:10,704 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:41:55]  *** Error codes and diagnostics ***
[2025-06-04 18:41:55]     "exeErrorCode": 0,
[2025-06-04 18:41:55]     "exeErrorDiag": "",
[2025-06-04 18:41:55]     "pilotErrorCode": 0,
[2025-06-04 18:41:55]     "pilotErrorDiag": "",
[2025-06-04 18:41:55]  *** Listing of results directory ***
[2025-06-04 18:41:55] total 397364
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc    495897 Jun  3 22:09 pilot3.tar.gz
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc      5111 Jun  3 22:29 queuedata.json
[2025-06-04 18:41:55] -rwx------. 1 boinc boinc     37140 Jun  3 22:30 runpilot2-wrapper.sh
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc       100 Jun  4 13:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:41:55] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 13:59 run_atlas
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc       105 Jun  4 13:59 job.xml
[2025-06-04 18:41:55] -rw-r--r--. 2 boinc boinc 217969592 Jun  4 13:59 EVNT.45006593._001797.pool.root.1
[2025-06-04 18:41:55] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:59 start_atlas.sh
[2025-06-04 18:41:55] drwxrwx--x. 2 boinc boinc        68 Jun  4 13:59 shared
[2025-06-04 18:41:55] -rw-r--r--. 2 boinc boinc    508880 Jun  4 13:59 input.tar.gz
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc      6393 Jun  4 13:59 init_data.xml
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc         0 Jun  4 13:59 boinc_lockfile
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc      2525 Jun  4 13:59 pandaJob.out
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc    986812 Jun  4 13:59 agis_schedconf.cvmfs.json
[2025-06-04 18:41:55] drwx------. 4 boinc boinc      4096 Jun  4 13:59 pilot3
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc 182143860 Jun  4 17:27 HITS.45006595._044830.pool.root.1
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc       531 Jun  4 17:28 boinc_task_state.xml
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc      1013 Jun  4 17:29 memory_monitor_summary.json
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc   1598969 Jun  4 17:29 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc    383219 Jun  4 17:29 log.45006595._044830.job.log.tgz.1
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc        95 Jun  4 17:30 pilot_heartbeat.json
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc      7687 Jun  4 17:30 heartbeat.json
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc      4417 Jun  4 17:31 pilotlog.txt
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc   1098690 Jun  4 17:31 log.45006595._044830.job.log.1
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc       357 Jun  4 17:31 output.list
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc       620 Jun  4 17:31 runtime_log
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc   1505280 Jun  4 17:31 result.tar.gz
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc      8673 Jun  4 17:31 runtime_log.err
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc       656 Jun  4 17:31 CDFNDmQSng7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmT3lKDmuXvwam.diag
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc      8192 Jun  4 18:41 boinc_mmap_file
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc        28 Jun  4 18:41 wrapper_checkpoint.txt
[2025-06-04 18:41:55] -rw-r--r--. 1 boinc boinc     20501 Jun  4 18:41 stderr.txt
[2025-06-04 18:41:55] HITS file was successfully produced:
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc 182143860 Jun  4 17:27 shared/HITS.pool.root.1
[2025-06-04 18:41:55]  *** Contents of shared directory: ***
[2025-06-04 18:41:55] total 392728
[2025-06-04 18:41:55] -rw-r--r--. 2 boinc boinc 217969592 Jun  4 13:59 ATLAS.root_0
[2025-06-04 18:41:55] -rw-r--r--. 2 boinc boinc     15093 Jun  4 13:59 start_atlas.sh
[2025-06-04 18:41:55] -rw-r--r--. 2 boinc boinc    508880 Jun  4 13:59 input.tar.gz
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc 182143860 Jun  4 17:27 HITS.pool.root.1
[2025-06-04 18:41:55] -rw-------. 1 boinc boinc   1505280 Jun  4 17:31 result.tar.gz
18:41:57 (31728): run_atlas exited; CPU time 45729.939321
18:41:57 (31728): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN