Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:45:09 (21317): wrapper (7.7.26015): starting
20:45:09 (21317): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 20:45:09] Arguments: --nthreads 12
[2025-06-03 20:45:09] Threads: 12
[2025-06-03 20:45:09] Checking for CVMFS
[2025-06-03 20:45:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:45:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:45:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:45:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:45:10] 2.11.2.0 28623 27603 86152 146762 1 58 17862768 20275200 1 130560 0 13362097 99.982 5169392 6438 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 20:45:10] CVMFS is ok
[2025-06-03 20:45:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 20:45:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 20:45:10] Further information can be found at the LHC@home message board.
[2025-06-03 20:45:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:45:10] Checking for apptainer binary...
[2025-06-03 20:45:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:45:10] Running /usr/bin/apptainer --version
[2025-06-03 20:45:10] apptainer version 1.3.2-1.el7
[2025-06-03 20:45:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:45:11] c-205-20.aglt2.org
[2025-06-03 20:45:11] apptainer works
[2025-06-03 20:45:11] Set ATHENA_PROC_NUMBER=12
[2025-06-03 20:45:11] Set ATHENA_CORE_NUMBER=12
[2025-06-03 20:45:11] Starting ATLAS job with PandaID=6677975697
[2025-06-03 20:45:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 21:52:14]  *** The last 200 lines of the pilot log: ***
[2025-06-03 21:52:14]  guid=a29f0e7a-262f-47c9-9f43-1357f41dca3e
[2025-06-03 21:52:14]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-03 21:52:14]  is_altstaged=None
[2025-06-03 21:52:14]  is_tar=False
[2025-06-03 21:52:14]  lfn=log.45006595._042789.job.log.tgz.1
[2025-06-03 21:52:14]  mtime=0
[2025-06-03 21:52:14]  protocol_id=None
[2025-06-03 21:52:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 21:52:14]  replicas=None
[2025-06-03 21:52:14]  scope=mc23_13p6TeV
[2025-06-03 21:52:14]  status=None
[2025-06-03 21:52:14]  status_code=0
[2025-06-03 21:52:14]  storage_token=
[2025-06-03 21:52:14]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677975697/log.45006595._042789.job.log.tgz.1
[2025-06-03 21:52:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8c/19/log.45006595._042789.job.log.tgz.1
[2025-06-03 21:52:14]  workdir=None
[2025-06-03 21:52:14] ]
[2025-06-03 21:52:14] 2025-06-04 01:51:49,270 | INFO     | transferring file log.45006595._042789.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677975697/log.45006595._042789.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 21:52:14] 2025-06-04 01:51:49,270 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677975697/log.45006595._042789.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._042789.job
[2025-06-03 21:52:14] 2025-06-04 01:51:49,292 | INFO     | adding to output.list: log.45006595._042789.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8c/19/log.45006595._042789.job.log.tg
[2025-06-03 21:52:14] 2025-06-04 01:51:49,293 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 21:52:14] 2025-06-04 01:51:49,294 | INFO     | summary of transferred files:
[2025-06-03 21:52:14] 2025-06-04 01:51:49,294 | INFO     |  -- lfn=log.45006595._042789.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 21:52:14] 2025-06-04 01:51:49,294 | INFO     | stage-out finished correctly
[2025-06-03 21:52:14] 2025-06-04 01:51:49,380 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 21:52:14] 2025-06-04 01:51:49,733 | INFO     | job 6677975697 has state=finished
[2025-06-03 21:52:14] 2025-06-04 01:51:49,734 | INFO     | preparing for final server update for job 6677975697 in state='finished'
[2025-06-03 21:52:14] 2025-06-04 01:51:49,734 | INFO     | this job has now completed (state=finished)
[2025-06-03 21:52:14] 2025-06-04 01:51:49,734 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 21:52:14] 2025-06-04 01:51:49,735 | INFO     | log transfer has been attempted: DONE
[2025-06-03 21:52:14] 2025-06-04 01:51:49,735 | INFO     | job 6677975697 has finished - writing final server update
[2025-06-03 21:52:14] 2025-06-04 01:51:49,735 | INFO     | total number of processed events: 400 (read)
[2025-06-03 21:52:14] 2025-06-04 01:51:49,737 | INFO     | executing command: lscpu
[2025-06-03 21:52:14] 2025-06-04 01:51:49,765 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 21:52:14] 2025-06-04 01:51:53,280 | WARNING  | process 586 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 21:52:14] 2025-06-04 01:51:53,280 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677975697/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:52:14] 2025-06-04 01:51:53,369 | INFO     | number of running child processes to parent process 586: 1
[2025-06-03 21:52:14] 2025-06-04 01:51:53,369 | INFO     | maximum number of monitored processes: 6
[2025-06-03 21:52:14] 2025-06-04 01:51:53,895 | INFO     | PID=24895 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-03 21:52:14] 2025-06-04 01:51:54,280 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-03 21:52:14] 2025-06-04 01:51:54,280 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677975697/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:52:14] 2025-06-04 01:51:54,281 | INFO     | extracted standard info from prmon json
[2025-06-03 21:52:14] 2025-06-04 01:51:54,281 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 21:52:14] 2025-06-04 01:51:54,281 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 21:52:14] 2025-06-04 01:51:54,282 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 21:52:14] 2025-06-04 01:51:54,282 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 21:52:14] 2025-06-04 01:51:54,284 | INFO     | fitting pss+swap vs Time
[2025-06-03 21:52:14] 2025-06-04 01:51:54,284 | INFO     | sum of square deviations: 60482994.5
[2025-06-03 21:52:14] 2025-06-04 01:51:54,285 | INFO     | sum of deviations: -4769272068.0
[2025-06-03 21:52:14] 2025-06-04 01:51:54,285 | INFO     | mean x: 1748999998.5
[2025-06-03 21:52:14] 2025-06-04 01:51:54,285 | INFO     | mean y: 2760518.103448276
[2025-06-03 21:52:14] 2025-06-04 01:51:54,285 | INFO     | -- intersect: 137916845439.57825
[2025-06-03 21:52:14] 2025-06-04 01:51:54,286 | INFO     | intersect: 137916845439.57825
[2025-06-03 21:52:14] 2025-06-04 01:51:54,286 | INFO     | chi2: 0.10804634943202919
[2025-06-03 21:52:14] 2025-06-04 01:51:54,286 | INFO     | -- intersect: 137916845439.57825
[2025-06-03 21:52:14] 2025-06-04 01:51:54,286 | INFO     | current memory leak: -78.85 B/s (using 58 data points, chi2=0.11)
[2025-06-03 21:52:14] 2025-06-04 01:51:54,287 | INFO     | ..............................
[2025-06-03 21:52:14] 2025-06-04 01:51:54,287 | INFO     | . Timing measurements:
[2025-06-03 21:52:14] 2025-06-04 01:51:54,287 | INFO     | . get job = 0 s
[2025-06-03 21:52:14] 2025-06-04 01:51:54,287 | INFO     | . initial setup = 2 s
[2025-06-03 21:52:14] 2025-06-04 01:51:54,288 | INFO     | . payload setup = 9 s
[2025-06-03 21:52:14] 2025-06-04 01:51:54,288 | INFO     | . stage-in = 0 s
[2025-06-03 21:52:14] 2025-06-04 01:51:54,288 | INFO     | . payload execution = 3954 s
[2025-06-03 21:52:14] 2025-06-04 01:51:54,288 | INFO     | . stage-out = 0 s
[2025-06-03 21:52:14] 2025-06-04 01:51:54,288 | INFO     | . log creation = 0 s
[2025-06-03 21:52:14] 2025-06-04 01:51:54,288 | INFO     | ..............................
[2025-06-03 21:52:14] 2025-06-04 01:51:54,576 | INFO     | 
[2025-06-03 21:52:14] 2025-06-04 01:51:54,576 | INFO     | job summary report
[2025-06-03 21:52:14] 2025-06-04 01:51:54,576 | INFO     | --------------------------------------------------
[2025-06-03 21:52:14] 2025-06-04 01:51:54,576 | INFO     | PanDA job id: 6677975697
[2025-06-03 21:52:14] 2025-06-04 01:51:54,577 | INFO     | task id: 45006595
[2025-06-03 21:52:14] 2025-06-04 01:51:54,577 | INFO     | errors: (none)
[2025-06-03 21:52:14] 2025-06-04 01:51:54,577 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 21:52:14] 2025-06-04 01:51:54,577 | INFO     | pilot state: finished 
[2025-06-03 21:52:14] 2025-06-04 01:51:54,577 | INFO     | transexitcode: 0
[2025-06-03 21:52:14] 2025-06-04 01:51:54,577 | INFO     | exeerrorcode: 0
[2025-06-03 21:52:14] 2025-06-04 01:51:54,578 | INFO     | exeerrordiag: 
[2025-06-03 21:52:14] 2025-06-04 01:51:54,578 | INFO     | exitcode: 0
[2025-06-03 21:52:14] 2025-06-04 01:51:54,578 | INFO     | exitmsg: OK
[2025-06-03 21:52:14] 2025-06-04 01:51:54,578 | INFO     | cpuconsumptiontime: 41784 s
[2025-06-03 21:52:14] 2025-06-04 01:51:54,578 | INFO     | nevents: 400
[2025-06-03 21:52:14] 2025-06-04 01:51:54,578 | INFO     | neventsw: 0
[2025-06-03 21:52:14] 2025-06-04 01:51:54,578 | INFO     | pid: 586
[2025-06-03 21:52:14] 2025-06-04 01:51:54,579 | INFO     | pgrp: 586
[2025-06-03 21:52:14] 2025-06-04 01:51:54,579 | INFO     | corecount: 12
[2025-06-03 21:52:14] 2025-06-04 01:51:54,579 | INFO     | event service: False
[2025-06-03 21:52:14] 2025-06-04 01:51:54,579 | INFO     | sizes: {0: 2405128, 5: 2405334, 11: 2405390, 3967: 2431065, 3968: 2440006, 3969: 2440062, 3973: 2440360}
[2025-06-03 21:52:14] 2025-06-04 01:51:54,579 | INFO     | --------------------------------------------------
[2025-06-03 21:52:14] 2025-06-04 01:51:54,579 | INFO     | 
[2025-06-03 21:52:14] 2025-06-04 01:51:54,579 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 21:52:14] 2025-06-04 01:51:54,602 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,602 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,602 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,603 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,603 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,603 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,603 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,603 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,603 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,603 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,604 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,604 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,604 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,604 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,604 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,604 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,604 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,605 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 21:52:14] 2025-06-04 01:51:54,605 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,605 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 21:52:14] 2025-06-04 01:51:54,605 | INFO     | job 6677975697 has completed (purged errors)
[2025-06-03 21:52:14] 2025-06-04 01:51:54,605 | INFO     | overall cleanup function is called
[2025-06-03 21:52:14] 2025-06-04 01:51:55,614 | INFO     | --- collectZombieJob: --- 10, [586]
[2025-06-03 21:52:14] 2025-06-04 01:51:55,614 | INFO     | zombie collector waiting for pid 586
[2025-06-03 21:52:14] 2025-06-04 01:51:55,614 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 21:52:14] 2025-06-04 01:51:55,614 | INFO     | collected zombie processes
[2025-06-03 21:52:14] 2025-06-04 01:51:55,615 | INFO     | will attempt to kill all subprocesses of pid=586
[2025-06-03 21:52:14] 2025-06-04 01:51:55,705 | INFO     | process IDs to be killed: [586] (in reverse order)
[2025-06-03 21:52:14] 2025-06-04 01:51:55,756 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 21:52:14] 2025-06-04 01:51:55,756 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 21:52:14] 2025-06-04 01:51:55,759 | INFO     | did not find any defunct processes belonging to 586
[2025-06-03 21:52:14] 2025-06-04 01:51:55,762 | INFO     | did not find any defunct processes belonging to 586
[2025-06-03 21:52:14] 2025-06-04 01:51:55,762 | INFO     | ready for new job
[2025-06-03 21:52:14] 2025-06-04 01:51:55,762 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 21:52:14] 2025-06-04 01:51:55,763 | INFO     | **************************************
[2025-06-03 21:52:14] 2025-06-04 01:51:55,763 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 21:52:14] 2025-06-04 01:51:55,763 | INFO     | **************************************
[2025-06-03 21:52:14] 2025-06-04 01:51:55,763 | INFO     | 
[2025-06-03 21:52:14] 2025-06-04 01:51:55,764 | INFO     | architecture information:
[2025-06-03 21:52:14] 2025-06-04 01:51:55,764 | INFO     | executing command: cat /etc/os-release
[2025-06-03 21:52:14] 2025-06-04 01:51:55,780 | INFO     | cat /etc/os-release:
[2025-06-03 21:52:14] NAME="CentOS Linux"
[2025-06-03 21:52:14] VERSION="7 (Core)"
[2025-06-03 21:52:14] ID="centos"
[2025-06-03 21:52:14] ID_LIKE="rhel fedora"
[2025-06-03 21:52:14] VERSION_ID="7"
[2025-06-03 21:52:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 21:52:14] ANSI_COLOR="0;31"
[2025-06-03 21:52:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 21:52:14] HOME_URL="https://www.centos.org/"
[2025-06-03 21:52:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 21:52:14] 
[2025-06-03 21:52:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 21:52:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 21:52:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 21:52:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 21:52:14] 
[2025-06-03 21:52:14] 2025-06-04 01:51:55,780 | INFO     | **************************************
[2025-06-03 21:52:14] 2025-06-04 01:51:56,283 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 21:52:14] 2025-06-04 01:51:56,299 | INFO     | sufficient remaining disk space (29412556800 B)
[2025-06-03 21:52:14] 2025-06-04 01:51:56,299 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 21:52:14] 2025-06-04 01:51:56,299 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 21:52:14] 2025-06-04 01:51:56,300 | INFO     | update_server=False
[2025-06-03 21:52:14] 2025-06-04 01:51:56,300 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 21:52:14] 2025-06-04 01:51:56,300 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:52:14] 2025-06-04 01:51:56,300 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 21:52:14] 2025-06-04 01:51:56,301 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 21:52:14] 2025-06-04 01:51:56,301 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 21:52:14] 2025-06-04 01:51:56,301 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 21:52:14] 2025-06-04 01:51:56,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 21:52:14] 2025-06-04 01:51:56,441 | INFO     | all job control threads have been joined
[2025-06-03 21:52:14] 2025-06-04 01:51:56,494 | INFO     | all payload control threads have been joined
[2025-06-03 21:52:14] 2025-06-04 01:51:56,880 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:52:14] 2025-06-04 01:51:56,880 | INFO     | aborting loop
[2025-06-03 21:52:14] 2025-06-04 01:51:57,188 | INFO     | all data control threads have been joined
[2025-06-03 21:52:14] 2025-06-04 01:51:57,305 | INFO     | [job] retrieve thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:57,306 | INFO     | [job] queue monitor thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:57,390 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 21:52:14] 2025-06-04 01:51:57,446 | INFO     | [job] control thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:57,500 | INFO     | [payload] control thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:57,548 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:57,586 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:57,719 | INFO     | [payload] failed_post thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:57,875 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:57,886 | INFO     | [job] job monitor thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:57,960 | INFO     | [data] copytool_in thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:58,193 | INFO     | [data] control thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:58,333 | INFO     | [payload] validate_post thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:58,586 | INFO     | [job] validate thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:51:59,395 | INFO     | [data] copytool_out thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:52:00,307 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:52:06,424 | INFO     | job.realtimelogging is not enabled
[2025-06-03 21:52:14] 2025-06-04 01:52:07,429 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 21:52:14] 2025-06-04 01:52:09,480 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668223125312)>', '<ExcThread(monitor, started 139667018077952)>']
[2025-06-03 21:52:14] 2025-06-04 01:52:10,370 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 21:52:14] 2025-06-04 01:52:10,370 | INFO     | [monitor] control thread has ended
[2025-06-03 21:52:14] 2025-06-04 01:52:14,483 | INFO     | all workflow threads have been joined
[2025-06-03 21:52:14] 2025-06-04 01:52:14,483 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 21:52:14] 2025-06-04 01:52:14,483 | INFO     | traces error code: 0
[2025-06-03 21:52:14] 2025-06-04 01:52:14,484 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 21:52:14] 2025-06-04 01:52:14,579 [wrapper] ==== pilot stdout END ====
[2025-06-03 21:52:14] 2025-06-04 01:52:14,583 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 21:52:14] 2025-06-04 01:52:14,587 [wrapper] pilotpid: 24895
[2025-06-03 21:52:14] 2025-06-04 01:52:14,591 [wrapper] Pilot exit status: 0
[2025-06-03 21:52:14] 2025-06-04 01:52:14,606 [wrapper] pandaids: 6677975697
[2025-06-03 21:52:14] 2025-06-04 01:52:14,648 [wrapper] cleanup supervisor_pilot 11050 24896
[2025-06-03 21:52:14] 2025-06-04 01:52:14,652 [wrapper] Test setup, not cleaning
[2025-06-03 21:52:14] 2025-06-04 01:52:14,656 [wrapper] apfmon messages muted
[2025-06-03 21:52:14] 2025-06-04 01:52:14,659 [wrapper] ==== wrapper stdout END ====
[2025-06-03 21:52:14] 2025-06-04 01:52:14,663 [wrapper] ==== wrapper stderr END ====
[2025-06-03 21:52:14]  *** Error codes and diagnostics ***
[2025-06-03 21:52:14]     "exeErrorCode": 0,
[2025-06-03 21:52:14]     "exeErrorDiag": "",
[2025-06-03 21:52:14]     "pilotErrorCode": 0,
[2025-06-03 21:52:14]     "pilotErrorDiag": "",
[2025-06-03 21:52:14]  *** Listing of results directory ***
[2025-06-03 21:52:14] total 395976
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 14:56 queuedata.json
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 14:57 pilot3.tar.gz
[2025-06-03 21:52:14] -rwx------ 1 boincer umatlas     37140 Jun  3 14:57 runpilot2-wrapper.sh
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas       100 Jun  3 20:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 21:52:14] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 20:45 run_atlas
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas       105 Jun  3 20:45 job.xml
[2025-06-03 21:52:14] -rw-r--r-- 2 boincer umatlas 214944146 Jun  3 20:45 EVNT.45006593._000388.pool.root.1
[2025-06-03 21:52:14] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 20:45 start_atlas.sh
[2025-06-03 21:52:14] drwxrwx--x 2 boincer umatlas      4096 Jun  3 20:45 shared
[2025-06-03 21:52:14] -rw-r--r-- 2 boincer umatlas    508884 Jun  3 20:45 input.tar.gz
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas         0 Jun  3 20:45 boinc_lockfile
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas      2522 Jun  3 20:45 pandaJob.out
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas    986069 Jun  3 20:45 agis_schedconf.cvmfs.json
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas   1603667 Jun  3 20:45 agis_ddmendpoints.agis.ALL.json
[2025-06-03 21:52:14] drwx------ 4 boincer umatlas      4096 Jun  3 20:45 pilot3
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas      5868 Jun  3 21:49 init_data.xml
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas        95 Jun  3 21:51 pilot_heartbeat.json
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas 185199114 Jun  3 21:51 HITS.45006595._042789.pool.root.1
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas      1049 Jun  3 21:51 memory_monitor_summary.json
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas        27 Jun  3 21:51 wrapper_checkpoint.txt
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 21:51 boinc_mmap_file
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas       530 Jun  3 21:51 boinc_task_state.xml
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas    366102 Jun  3 21:51 log.45006595._042789.job.log.tgz.1
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas      7750 Jun  3 21:51 heartbeat.json
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas      4548 Jun  3 21:52 pilotlog.txt
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas    387439 Jun  3 21:52 log.45006595._042789.job.log.1
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas       357 Jun  3 21:52 output.list
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas       620 Jun  3 21:52 runtime_log
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas    768000 Jun  3 21:52 result.tar.gz
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas      8661 Jun  3 21:52 runtime_log.err
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas       659 Jun  3 21:52 1ZiKDmj0lg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmamlKDm1MuaBn.diag
[2025-06-03 21:52:14] -rw-r--r-- 1 boincer umatlas     21343 Jun  3 21:52 stderr.txt
[2025-06-03 21:52:14] HITS file was successfully produced:
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas 185199114 Jun  3 21:51 shared/HITS.pool.root.1
[2025-06-03 21:52:14]  *** Contents of shared directory: ***
[2025-06-03 21:52:14] total 392040
[2025-06-03 21:52:14] -rw-r--r-- 2 boincer umatlas 214944146 Jun  3 20:45 ATLAS.root_0
[2025-06-03 21:52:14] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 20:45 start_atlas.sh
[2025-06-03 21:52:14] -rw-r--r-- 2 boincer umatlas    508884 Jun  3 20:45 input.tar.gz
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas 185199114 Jun  3 21:51 HITS.pool.root.1
[2025-06-03 21:52:14] -rw------- 1 boincer umatlas    768000 Jun  3 21:52 result.tar.gz
21:52:16 (21317): run_atlas exited; CPU time 41757.915906
21:52:16 (21317): called boinc_finish(0)

</stderr_txt>
]]>

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