Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:40:31 (30573): wrapper (7.7.26015): starting
11:40:31 (30573): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 11:40:31] Arguments: --nthreads 8
[2025-06-04 11:40:31] Threads: 8
[2025-06-04 11:40:31] Checking for CVMFS
[2025-06-04 11:40:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:40:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:40:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:40:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:40:33] 2.11.2.0 16765 33055 91700 146775 2 16 15760040 25165825 3135 130560 0 15924858 99.772 19836895 2086 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 11:40:33] CVMFS is ok
[2025-06-04 11:40:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:40:33] Checking for apptainer binary...
[2025-06-04 11:40:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:40:33] Running /usr/bin/apptainer --version
[2025-06-04 11:40:34] apptainer version 1.3.2-1.el7
[2025-06-04 11:40:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:40:47] cg-vwn404.simple-grid.lan
[2025-06-04 11:40:47] apptainer works
[2025-06-04 11:40:47] Set ATHENA_PROC_NUMBER=8
[2025-06-04 11:40:47] Set ATHENA_CORE_NUMBER=8
[2025-06-04 11:40:47] Starting ATLAS job with PandaID=6678071234
[2025-06-04 11:40:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 15:45:41]  *** The last 200 lines of the pilot log: ***
[2025-06-04 15:45:41] 2025-06-04 13:34:24,742 | INFO     | extracted standard info from prmon json
[2025-06-04 15:45:41] 2025-06-04 13:34:24,742 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 15:45:41] 2025-06-04 13:34:24,742 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 15:45:41] 2025-06-04 13:34:24,743 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 15:45:41] 2025-06-04 13:34:24,743 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 15:45:41] 2025-06-04 13:34:24,748 | INFO     | fitting pss+swap vs Time
[2025-06-04 15:45:41] 2025-06-04 13:34:24,748 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,750 | INFO     | sum of deviations: 69588405696.00006
[2025-06-04 15:45:41] 2025-06-04 13:34:24,750 | INFO     | mean x: 1749037322.0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,750 | INFO     | mean y: 2421334.4838709678
[2025-06-04 15:45:41] 2025-06-04 13:34:24,750 | INFO     | -- intersect: -38411404319.635345
[2025-06-04 15:45:41] 2025-06-04 13:34:24,751 | INFO     | intersect: -38411404319.635345
[2025-06-04 15:45:41] 2025-06-04 13:34:24,754 | INFO     | chi2: 7.3232410438636
[2025-06-04 15:45:41] 2025-06-04 13:34:24,755 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,757 | INFO     | sum of deviations: 82221589967.5
[2025-06-04 15:45:41] 2025-06-04 13:34:24,757 | INFO     | mean x: 1749037169.5
[2025-06-04 15:45:41] 2025-06-04 13:34:24,757 | INFO     | mean y: 2430146.570754717
[2025-06-04 15:45:41] 2025-06-04 13:34:24,757 | INFO     | -- intersect: -48672861913.4975
[2025-06-04 15:45:41] 2025-06-04 13:34:24,757 | INFO     | intersect: -48672861913.4975
[2025-06-04 15:45:41] 2025-06-04 13:34:24,758 | INFO     | chi2: 6.625085257102848
[2025-06-04 15:45:41] 2025-06-04 13:34:24,758 | INFO     | current chi2=6.625085257102848 (change=9.533426287337102 %)
[2025-06-04 15:45:41] 2025-06-04 13:34:24,758 | INFO     | right removable region: 211
[2025-06-04 15:45:41] 2025-06-04 13:34:24,758 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,760 | INFO     | sum of deviations: -4764210654.000004
[2025-06-04 15:45:41] 2025-06-04 13:34:24,760 | INFO     | mean x: 1749037474.5
[2025-06-04 15:45:41] 2025-06-04 13:34:24,760 | INFO     | mean y: 2474268.5188679243
[2025-06-04 15:45:41] 2025-06-04 13:34:24,760 | INFO     | -- intersect: 2822893887.6212797
[2025-06-04 15:45:41] 2025-06-04 13:34:24,761 | INFO     | intersect: 2822893887.6212797
[2025-06-04 15:45:41] 2025-06-04 13:34:24,761 | INFO     | chi2: 2.426460156125732
[2025-06-04 15:45:41] 2025-06-04 13:34:24,761 | INFO     | current chi2=2.426460156125732 (change=66.86630766907574 %)
[2025-06-04 15:45:41] 2025-06-04 13:34:24,761 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,763 | INFO     | sum of deviations: -41899677011.0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,763 | INFO     | mean x: 1749037627.0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,763 | INFO     | mean y: 2501821.9178743963
[2025-06-04 15:45:41] 2025-06-04 13:34:24,763 | INFO     | -- intersect: 26648408525.51322
[2025-06-04 15:45:41] 2025-06-04 13:34:24,764 | INFO     | intersect: 26648408525.51322
[2025-06-04 15:45:41] 2025-06-04 13:34:24,764 | INFO     | chi2: 0.9667591774772382
[2025-06-04 15:45:41] 2025-06-04 13:34:24,764 | INFO     | current chi2=0.9667591774772382 (change=60.157632300839495 %)
[2025-06-04 15:45:41] 2025-06-04 13:34:24,764 | INFO     | sum of square deviations: 2555770710.5
[2025-06-04 15:45:41] 2025-06-04 13:34:24,766 | INFO     | sum of deviations: -39043442535.0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,766 | INFO     | mean x: 1749037779.5
[2025-06-04 15:45:41] 2025-06-04 13:34:24,766 | INFO     | mean y: 2499535.594059406
[2025-06-04 15:45:41] 2025-06-04 13:34:24,766 | INFO     | -- intersect: 26721819760.565487
[2025-06-04 15:45:41] 2025-06-04 13:34:24,766 | INFO     | intersect: 26721819760.565487
[2025-06-04 15:45:41] 2025-06-04 13:34:24,767 | INFO     | chi2: 0.9472463669259791
[2025-06-04 15:45:41] 2025-06-04 13:34:24,767 | INFO     | current chi2=0.9472463669259791 (change=2.0183734487194465 %)
[2025-06-04 15:45:41] 2025-06-04 13:34:24,767 | INFO     | left removable region: 30
[2025-06-04 15:45:41] 2025-06-04 13:34:24,767 | INFO     | sum of square deviations: 1838657730.0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,769 | INFO     | sum of deviations: -4098572187.999997
[2025-06-04 15:45:41] 2025-06-04 13:34:24,769 | INFO     | mean x: 1749038054.0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,769 | INFO     | mean y: 2492001.773480663
[2025-06-04 15:45:41] 2025-06-04 13:34:24,769 | INFO     | -- intersect: 3901291983.3655076
[2025-06-04 15:45:41] 2025-06-04 13:34:24,769 | INFO     | intersect: 3901291983.3655076
[2025-06-04 15:45:41] 2025-06-04 13:34:24,769 | INFO     | chi2: 0.06188442469374818
[2025-06-04 15:45:41] 2025-06-04 13:34:24,769 | INFO     | -- intersect: 3901291983.3655076
[2025-06-04 15:45:41] 2025-06-04 13:34:24,770 | INFO     | current memory leak: -2.23 B/s (using 181 data points, chi2=0.06)
[2025-06-04 15:45:41] 2025-06-04 13:34:24,770 | INFO     | ..............................
[2025-06-04 15:45:41] 2025-06-04 13:34:24,770 | INFO     | . Timing measurements:
[2025-06-04 15:45:41] 2025-06-04 13:34:24,771 | INFO     | . get job = 0 s
[2025-06-04 15:45:41] 2025-06-04 13:34:24,771 | INFO     | . initial setup = 11 s
[2025-06-04 15:45:41] 2025-06-04 13:34:24,771 | INFO     | . payload setup = 162 s
[2025-06-04 15:45:41] 2025-06-04 13:34:24,771 | INFO     | . stage-in = 0 s
[2025-06-04 15:45:41] 2025-06-04 13:34:24,771 | INFO     | . payload execution = 13372 s
[2025-06-04 15:45:41] 2025-06-04 13:34:24,771 | INFO     | . stage-out = 10 s
[2025-06-04 15:45:41] 2025-06-04 13:34:24,771 | INFO     | . log creation = 1 s
[2025-06-04 15:45:41] 2025-06-04 13:34:24,771 | INFO     | ..............................
[2025-06-04 15:45:41] 2025-06-04 13:34:24,911 | INFO     | 
[2025-06-04 15:45:41] 2025-06-04 13:34:24,911 | INFO     | job summary report
[2025-06-04 15:45:41] 2025-06-04 13:34:24,911 | INFO     | --------------------------------------------------
[2025-06-04 15:45:41] 2025-06-04 13:34:24,911 | INFO     | PanDA job id: 6678071234
[2025-06-04 15:45:41] 2025-06-04 13:34:24,912 | INFO     | task id: 45006595
[2025-06-04 15:45:41] 2025-06-04 13:34:24,912 | INFO     | errors: (none)
[2025-06-04 15:45:41] 2025-06-04 13:34:24,912 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 15:45:41] 2025-06-04 13:34:24,912 | INFO     | pilot state: finished 
[2025-06-04 15:45:41] 2025-06-04 13:34:24,912 | INFO     | transexitcode: 0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,912 | INFO     | exeerrorcode: 0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,912 | INFO     | exeerrordiag: 
[2025-06-04 15:45:41] 2025-06-04 13:34:24,912 | INFO     | exitcode: 0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,912 | INFO     | exitmsg: OK
[2025-06-04 15:45:41] 2025-06-04 13:34:24,912 | INFO     | cpuconsumptiontime: 49646 s
[2025-06-04 15:45:41] 2025-06-04 13:34:24,912 | INFO     | nevents: 400
[2025-06-04 15:45:41] 2025-06-04 13:34:24,913 | INFO     | neventsw: 0
[2025-06-04 15:45:41] 2025-06-04 13:34:24,913 | INFO     | pid: 10654
[2025-06-04 15:45:41] 2025-06-04 13:34:24,913 | INFO     | pgrp: 10654
[2025-06-04 15:45:41] 2025-06-04 13:34:24,913 | INFO     | corecount: 8
[2025-06-04 15:45:41] 2025-06-04 13:34:24,913 | INFO     | event service: False
[2025-06-04 15:45:41] 2025-06-04 13:34:24,913 | INFO     | sizes: {0: 2404957, 1: 2405212, 2: 2405212, 12: 2405240, 23: 2405268, 34: 2405296, 45: 2405452, 55: 2405480, 66: 2405508, 77: 2405536, 88: 2405592, 89: 2406106, 98
[2025-06-04 15:45:41] 2025-06-04 13:34:24,913 | INFO     | --------------------------------------------------
[2025-06-04 15:45:41] 2025-06-04 13:34:24,913 | INFO     | 
[2025-06-04 15:45:41] 2025-06-04 13:34:24,913 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-04 15:45:41] 2025-06-04 13:34:25,238 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,239 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,239 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,239 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,239 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,239 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,239 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,239 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,240 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,240 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,240 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,240 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,240 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,240 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,240 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,240 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,240 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,240 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 15:45:41] 2025-06-04 13:34:25,241 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,241 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 15:45:41] 2025-06-04 13:34:25,241 | INFO     | job 6678071234 has completed (purged errors)
[2025-06-04 15:45:41] 2025-06-04 13:34:25,241 | INFO     | overall cleanup function is called
[2025-06-04 15:45:41] 2025-06-04 13:34:26,249 | INFO     | --- collectZombieJob: --- 10, [10654]
[2025-06-04 15:45:41] 2025-06-04 13:34:26,249 | INFO     | zombie collector waiting for pid 10654
[2025-06-04 15:45:41] 2025-06-04 13:34:26,249 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 15:45:41] 2025-06-04 13:34:26,249 | INFO     | collected zombie processes
[2025-06-04 15:45:41] 2025-06-04 13:34:26,250 | INFO     | will attempt to kill all subprocesses of pid=10654
[2025-06-04 15:45:41] 2025-06-04 13:34:26,373 | INFO     | process IDs to be killed: [10654] (in reverse order)
[2025-06-04 15:45:41] 2025-06-04 13:34:26,973 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 15:45:41] 2025-06-04 13:34:26,973 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 15:45:41] 2025-06-04 13:34:26,977 | INFO     | did not find any defunct processes belonging to 10654
[2025-06-04 15:45:41] 2025-06-04 13:34:26,979 | INFO     | did not find any defunct processes belonging to 10654
[2025-06-04 15:45:41] 2025-06-04 13:34:26,980 | INFO     | ready for new job
[2025-06-04 15:45:41] 2025-06-04 13:34:26,980 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 15:45:41] 2025-06-04 13:34:26,982 | INFO     | **************************************
[2025-06-04 15:45:41] 2025-06-04 13:34:26,982 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 15:45:41] 2025-06-04 13:34:26,982 | INFO     | **************************************
[2025-06-04 15:45:41] 2025-06-04 13:34:26,982 | INFO     | 
[2025-06-04 15:45:41] 2025-06-04 13:34:26,989 | INFO     | pilot is running in a VM
[2025-06-04 15:45:41] 2025-06-04 13:34:26,990 | INFO     | architecture information:
[2025-06-04 15:45:41] 2025-06-04 13:34:27,002 | INFO     | executing command: cat /etc/os-release
[2025-06-04 15:45:41] 2025-06-04 13:34:27,254 | INFO     | cat /etc/os-release:
[2025-06-04 15:45:41] NAME="CentOS Linux"
[2025-06-04 15:45:41] VERSION="7 (Core)"
[2025-06-04 15:45:41] ID="centos"
[2025-06-04 15:45:41] ID_LIKE="rhel fedora"
[2025-06-04 15:45:41] VERSION_ID="7"
[2025-06-04 15:45:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 15:45:41] ANSI_COLOR="0;31"
[2025-06-04 15:45:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 15:45:41] HOME_URL="https://www.centos.org/"
[2025-06-04 15:45:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 15:45:41] 
[2025-06-04 15:45:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 15:45:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 15:45:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 15:45:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 15:45:41] 
[2025-06-04 15:45:41] 2025-06-04 13:34:27,255 | INFO     | **************************************
[2025-06-04 15:45:41] 2025-06-04 13:34:27,758 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-04 15:45:41] 2025-06-04 13:34:27,972 | INFO     | sufficient remaining disk space (496745054208 B)
[2025-06-04 15:45:41] 2025-06-04 13:34:27,972 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 15:45:41] 2025-06-04 13:34:27,973 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 15:45:41] 2025-06-04 13:34:27,973 | INFO     | update_server=False
[2025-06-04 15:45:41] 2025-06-04 13:34:27,973 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 15:45:41] 2025-06-04 13:34:27,974 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:45:41] 2025-06-04 13:34:27,974 | INFO     | aborting loop
[2025-06-04 15:45:41] 2025-06-04 13:34:27,980 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 15:45:41] 2025-06-04 13:34:27,981 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 15:45:41] 2025-06-04 13:34:27,981 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 15:45:41] 2025-06-04 13:34:27,982 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 15:45:41] 2025-06-04 13:34:27,982 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 15:45:41] 2025-06-04 13:34:28,044 | INFO     | all payload control threads have been joined
[2025-06-04 15:45:41] 2025-06-04 13:34:28,278 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 15:45:41] 2025-06-04 13:34:28,725 | INFO     | all data control threads have been joined
[2025-06-04 15:45:41] 2025-06-04 13:34:28,979 | INFO     | [job] retrieve thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:28,980 | INFO     | [job] job monitor thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:29,021 | INFO     | [payload] validate_post thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:29,049 | INFO     | [payload] control thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:29,432 | INFO     | [payload] failed_post thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:29,460 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:29,509 | INFO     | [job] validate thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:29,599 | INFO     | all job control threads have been joined
[2025-06-04 15:45:41] 2025-06-04 13:34:29,650 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:29,731 | INFO     | [data] control thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:29,845 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:29,929 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:45:41] 2025-06-04 13:34:29,999 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:30,285 | INFO     | [data] copytool_out thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:30,391 | INFO     | [data] copytool_in thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:30,605 | INFO     | [job] control thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:30,935 | INFO     | [job] queue monitor thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:31,989 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 15:45:41] 2025-06-04 13:34:32,331 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125165045568)>', '<ExcThread(monitor, started 140124515989248)>']
[2025-06-04 15:45:41] 2025-06-04 13:34:33,010 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 15:45:41] 2025-06-04 13:34:33,010 | INFO     | [monitor] control thread has ended
[2025-06-04 15:45:41] 2025-06-04 13:34:37,357 | INFO     | all workflow threads have been joined
[2025-06-04 15:45:41] 2025-06-04 13:34:37,357 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 15:45:41] 2025-06-04 13:34:37,358 | INFO     | traces error code: 0
[2025-06-04 15:45:41] 2025-06-04 13:34:37,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 15:45:41] 2025-06-04 13:34:37,787 [wrapper] ==== pilot stdout END ====
[2025-06-04 15:45:41] 2025-06-04 13:34:37,888 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 15:45:41] 2025-06-04 13:34:37,938 [wrapper] pilotpid: 4016
[2025-06-04 15:45:41] 2025-06-04 13:34:37,994 [wrapper] Pilot exit status: 0
[2025-06-04 15:45:41] 2025-06-04 13:34:38,340 [wrapper] pandaids: 6678071234
[2025-06-04 15:45:41] 2025-06-04 13:34:38,849 [wrapper] cleanup supervisor_pilot 19068 4017
[2025-06-04 15:45:41] 2025-06-04 13:34:38,864 [wrapper] Test setup, not cleaning
[2025-06-04 15:45:41] 2025-06-04 13:34:38,868 [wrapper] apfmon messages muted
[2025-06-04 15:45:41] 2025-06-04 13:34:38,888 [wrapper] ==== wrapper stdout END ====
[2025-06-04 15:45:41] 2025-06-04 13:34:38,945 [wrapper] ==== wrapper stderr END ====
[2025-06-04 15:45:41]  *** Error codes and diagnostics ***
[2025-06-04 15:45:41]     "exeErrorCode": 0,
[2025-06-04 15:45:41]     "exeErrorDiag": "",
[2025-06-04 15:45:41]     "pilotErrorCode": 0,
[2025-06-04 15:45:41]     "pilotErrorDiag": "",
[2025-06-04 15:45:41]  *** Listing of results directory ***
[2025-06-04 15:45:41] total 391104
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc    495897 Jun  3 22:36 pilot3.tar.gz
[2025-06-04 15:45:41] -rwx------. 1 boinc boinc     37140 Jun  3 22:39 runpilot2-wrapper.sh
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc      5111 Jun  3 22:39 queuedata.json
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc       100 Jun  4 11:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 15:45:41] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 11:40 run_atlas
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc       105 Jun  4 11:40 job.xml
[2025-06-04 15:45:41] -rw-r--r--. 2 boinc boinc 213386422 Jun  4 11:40 EVNT.45006593._001809.pool.root.1
[2025-06-04 15:45:41] drwxrwx--x. 2 boinc boinc        68 Jun  4 11:40 shared
[2025-06-04 15:45:41] -rw-r--r--. 2 boinc boinc    508880 Jun  4 11:40 input.tar.gz
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc      6392 Jun  4 11:40 init_data.xml
[2025-06-04 15:45:41] -rw-r--r--. 2 boinc boinc     15093 Jun  4 11:40 start_atlas.sh
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc         0 Jun  4 11:40 boinc_lockfile
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc      2525 Jun  4 11:40 pandaJob.out
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc    986766 Jun  4 11:43 agis_schedconf.cvmfs.json
[2025-06-04 15:45:41] drwx------. 4 boinc boinc      4096 Jun  4 11:43 pilot3
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc 180175958 Jun  4 15:31 HITS.45006595._045096.pool.root.1
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc       531 Jun  4 15:31 boinc_task_state.xml
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc      1016 Jun  4 15:32 memory_monitor_summary.json
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc   1598969 Jun  4 15:32 agis_ddmendpoints.agis.ALL.json
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc    380788 Jun  4 15:32 log.45006595._045096.job.log.tgz.1
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc        95 Jun  4 15:34 pilot_heartbeat.json
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc      7689 Jun  4 15:34 heartbeat.json
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc      4539 Jun  4 15:34 pilotlog.txt
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc   1175229 Jun  4 15:34 log.45006595._045096.job.log.1
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc       357 Jun  4 15:34 output.list
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc       620 Jun  4 15:34 runtime_log
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc   1576960 Jun  4 15:34 result.tar.gz
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc       657 Jun  4 15:34 TAMLDmPbng7n9Rq4apOajLDm4fhM0noT9bVof3QYDmQuZKDmsxtGyn.diag
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc      8659 Jun  4 15:34 runtime_log.err
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc      8192 Jun  4 15:45 boinc_mmap_file
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc        28 Jun  4 15:45 wrapper_checkpoint.txt
[2025-06-04 15:45:41] -rw-r--r--. 1 boinc boinc     20505 Jun  4 15:45 stderr.txt
[2025-06-04 15:45:41] HITS file was successfully produced:
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc 180175958 Jun  4 15:31 shared/HITS.pool.root.1
[2025-06-04 15:45:41]  *** Contents of shared directory: ***
[2025-06-04 15:45:41] total 386400
[2025-06-04 15:45:41] -rw-r--r--. 2 boinc boinc 213386422 Jun  4 11:40 ATLAS.root_0
[2025-06-04 15:45:41] -rw-r--r--. 2 boinc boinc    508880 Jun  4 11:40 input.tar.gz
[2025-06-04 15:45:41] -rw-r--r--. 2 boinc boinc     15093 Jun  4 11:40 start_atlas.sh
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc 180175958 Jun  4 15:31 HITS.pool.root.1
[2025-06-04 15:45:41] -rw-------. 1 boinc boinc   1576960 Jun  4 15:34 result.tar.gz
15:45:43 (30573): run_atlas exited; CPU time 49843.909910
15:45:43 (30573): called boinc_finish(0)

</stderr_txt>
]]>

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