Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:51:55 (4145730): wrapper (7.7.26015): starting
13:51:55 (4145730): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 13:51:55] Arguments: --nthreads 4
[2025-06-05 13:51:55] Threads: 4
[2025-06-05 13:51:55] Checking for CVMFS
[2025-06-05 13:51:55] No cvmfs_config command found, will try listing directly
[2025-06-05 13:51:55] CVMFS is ok
[2025-06-05 13:51:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 13:51:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 13:51:55] Further information can be found at the LHC@home message board.
[2025-06-05 13:51:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 13:51:55] Checking for apptainer binary...
[2025-06-05 13:51:55] which: no apptainer in ((null))
[2025-06-05 13:51:55] apptainer is not installed, using version from CVMFS
[2025-06-05 13:51:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 13:51:55] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-06-05 13:51:55] apptainer works
[2025-06-05 13:51:55] Set ATHENA_PROC_NUMBER=4
[2025-06-05 13:51:55] Set ATHENA_CORE_NUMBER=4
[2025-06-05 13:51:55] Starting ATLAS job with PandaID=6677921532
[2025-06-05 13:51:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 16:12:33]  *** The last 200 lines of the pilot log: ***
[2025-06-05 16:12:33] 2025-06-05 14:11:48,011 | INFO     | mean y: 2330226.765151515
[2025-06-05 16:12:33] 2025-06-05 14:11:48,011 | INFO     | -- intersect: 5269123510.177983
[2025-06-05 16:12:33] 2025-06-05 14:11:48,011 | INFO     | intersect: 5269123510.177983
[2025-06-05 16:12:33] 2025-06-05 14:11:48,012 | INFO     | chi2: 0.010904297336437302
[2025-06-05 16:12:33] 2025-06-05 14:11:48,012 | INFO     | current chi2=0.010904297336437302 (change=99.36780018004796 %)
[2025-06-05 16:12:33] 2025-06-05 14:11:48,012 | INFO     | sum of square deviations: 635130048.0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,013 | INFO     | sum of deviations: -2303606989.0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,013 | INFO     | mean x: 1749128818.0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,013 | INFO     | mean y: 2330490.929133858
[2025-06-05 16:12:33] 2025-06-05 14:11:48,013 | INFO     | -- intersect: 6346394013.815881
[2025-06-05 16:12:33] 2025-06-05 14:11:48,013 | INFO     | intersect: 6346394013.815881
[2025-06-05 16:12:33] 2025-06-05 14:11:48,013 | INFO     | chi2: 0.007381917703882961
[2025-06-05 16:12:33] 2025-06-05 14:11:48,013 | INFO     | current chi2=0.007381917703882961 (change=32.30267410981283 %)
[2025-06-05 16:12:33] 2025-06-05 14:11:48,014 | INFO     | sum of square deviations: 563026370.5
[2025-06-05 16:12:33] 2025-06-05 14:11:48,014 | INFO     | sum of deviations: -1228660169.9999995
[2025-06-05 16:12:33] 2025-06-05 14:11:48,014 | INFO     | mean x: 1749128970.5
[2025-06-05 16:12:33] 2025-06-05 14:11:48,015 | INFO     | mean y: 2328206.0327868853
[2025-06-05 16:12:33] 2025-06-05 14:11:48,015 | INFO     | -- intersect: 3819352080.665767
[2025-06-05 16:12:33] 2025-06-05 14:11:48,015 | INFO     | intersect: 3819352080.665767
[2025-06-05 16:12:33] 2025-06-05 14:11:48,015 | INFO     | chi2: 0.005356214494159107
[2025-06-05 16:12:33] 2025-06-05 14:11:48,015 | INFO     | current chi2=0.005356214494159107 (change=27.44142228324104 %)
[2025-06-05 16:12:33] 2025-06-05 14:11:48,015 | INFO     | sum of square deviations: 496597218.0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,016 | INFO     | sum of deviations: -96503097.99999978
[2025-06-05 16:12:33] 2025-06-05 14:11:48,016 | INFO     | mean x: 1749129123.0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,016 | INFO     | mean y: 2325607.8547008545
[2025-06-05 16:12:33] 2025-06-05 14:11:48,016 | INFO     | -- intersect: 342231618.3058562
[2025-06-05 16:12:33] 2025-06-05 14:11:48,016 | INFO     | intersect: 342231618.3058562
[2025-06-05 16:12:33] 2025-06-05 14:11:48,017 | INFO     | chi2: 0.0022816410706073295
[2025-06-05 16:12:33] 2025-06-05 14:11:48,017 | INFO     | current chi2=0.0022816410706073295 (change=57.40198468348431 %)
[2025-06-05 16:12:33] 2025-06-05 14:11:48,017 | INFO     | sum of square deviations: 435610028.0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,017 | INFO     | sum of deviations: 540129593.5
[2025-06-05 16:12:33] 2025-06-05 14:11:48,018 | INFO     | mean x: 1749129275.5
[2025-06-05 16:12:33] 2025-06-05 14:11:48,018 | INFO     | mean y: 2324045.4375
[2025-06-05 16:12:33] 2025-06-05 14:11:48,018 | INFO     | -- intersect: -2166488479.1326747
[2025-06-05 16:12:33] 2025-06-05 14:11:48,018 | INFO     | intersect: -2166488479.1326747
[2025-06-05 16:12:33] 2025-06-05 14:11:48,018 | INFO     | chi2: 2.536991610329326e-05
[2025-06-05 16:12:33] 2025-06-05 14:11:48,018 | INFO     | current chi2=2.536991610329326e-05 (change=98.8880847022735 %)
[2025-06-05 16:12:33] 2025-06-05 14:11:48,018 | INFO     | sum of square deviations: 379832238.0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,019 | INFO     | sum of deviations: 465497893.0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,019 | INFO     | mean x: 1749129428.0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,019 | INFO     | mean y: 2324249.570093458
[2025-06-05 16:12:33] 2025-06-05 14:11:48,019 | INFO     | -- intersect: -2141295964.4631743
[2025-06-05 16:12:33] 2025-06-05 14:11:48,019 | INFO     | intersect: -2141295964.4631743
[2025-06-05 16:12:33] 2025-06-05 14:11:48,020 | INFO     | chi2: 2.524793484352641e-05
[2025-06-05 16:12:33] 2025-06-05 14:11:48,020 | INFO     | current chi2=2.524793484352641e-05 (change=0.4808106549119207 %)
[2025-06-05 16:12:33] 2025-06-05 14:11:48,020 | INFO     | left removable region: 60
[2025-06-05 16:12:33] 2025-06-05 14:11:48,020 | INFO     | sum of square deviations: 110960220.0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,020 | INFO     | sum of deviations: 95462559.99999997
[2025-06-05 16:12:33] 2025-06-05 14:11:48,020 | INFO     | mean x: 1749130160.0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,021 | INFO     | mean y: 2325216.1549295774
[2025-06-05 16:12:33] 2025-06-05 14:11:48,021 | INFO     | -- intersect: -1502506360.8445532
[2025-06-05 16:12:33] 2025-06-05 14:11:48,021 | INFO     | intersect: -1502506360.8445532
[2025-06-05 16:12:33] 2025-06-05 14:11:48,021 | INFO     | chi2: 1.2206439775133722e-05
[2025-06-05 16:12:33] 2025-06-05 14:11:48,021 | INFO     | -- intersect: -1502506360.8445532
[2025-06-05 16:12:33] 2025-06-05 14:11:48,021 | INFO     | current memory leak: 0.86 B/s (using 71 data points, chi2=0.00)
[2025-06-05 16:12:33] 2025-06-05 14:11:48,022 | INFO     | ..............................
[2025-06-05 16:12:33] 2025-06-05 14:11:48,022 | INFO     | . Timing measurements:
[2025-06-05 16:12:33] 2025-06-05 14:11:48,022 | INFO     | . get job = 0 s
[2025-06-05 16:12:33] 2025-06-05 14:11:48,022 | INFO     | . initial setup = 1 s
[2025-06-05 16:12:33] 2025-06-05 14:11:48,022 | INFO     | . payload setup = 10 s
[2025-06-05 16:12:33] 2025-06-05 14:11:48,022 | INFO     | . stage-in = 0 s
[2025-06-05 16:12:33] 2025-06-05 14:11:48,022 | INFO     | . payload execution = 8338 s
[2025-06-05 16:12:33] 2025-06-05 14:11:48,022 | INFO     | . stage-out = 0 s
[2025-06-05 16:12:33] 2025-06-05 14:11:48,022 | INFO     | . log creation = 0 s
[2025-06-05 16:12:33] 2025-06-05 14:11:48,022 | INFO     | ..............................
[2025-06-05 16:12:33] 2025-06-05 14:11:48,118 | INFO     | 
[2025-06-05 16:12:33] 2025-06-05 14:11:48,118 | INFO     | job summary report
[2025-06-05 16:12:33] 2025-06-05 14:11:48,118 | INFO     | --------------------------------------------------
[2025-06-05 16:12:33] 2025-06-05 14:11:48,118 | INFO     | PanDA job id: 6677921532
[2025-06-05 16:12:33] 2025-06-05 14:11:48,118 | INFO     | task id: 45006595
[2025-06-05 16:12:33] 2025-06-05 14:11:48,119 | INFO     | errors: (none)
[2025-06-05 16:12:33] 2025-06-05 14:11:48,119 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 16:12:33] 2025-06-05 14:11:48,119 | INFO     | pilot state: finished 
[2025-06-05 16:12:33] 2025-06-05 14:11:48,119 | INFO     | transexitcode: 0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,119 | INFO     | exeerrorcode: 0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,119 | INFO     | exeerrordiag: 
[2025-06-05 16:12:33] 2025-06-05 14:11:48,119 | INFO     | exitcode: 0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,119 | INFO     | exitmsg: OK
[2025-06-05 16:12:33] 2025-06-05 14:11:48,119 | INFO     | cpuconsumptiontime: 31497 s
[2025-06-05 16:12:33] 2025-06-05 14:11:48,119 | INFO     | nevents: 400
[2025-06-05 16:12:33] 2025-06-05 14:11:48,119 | INFO     | neventsw: 0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,119 | INFO     | pid: 4186941
[2025-06-05 16:12:33] 2025-06-05 14:11:48,120 | INFO     | pgrp: 4186941
[2025-06-05 16:12:33] 2025-06-05 14:11:48,120 | INFO     | corecount: 4
[2025-06-05 16:12:33] 2025-06-05 14:11:48,120 | INFO     | event service: False
[2025-06-05 16:12:33] 2025-06-05 14:11:48,120 | INFO     | sizes: {0: 2397182, 1: 2397381, 8: 2397587, 11: 2397615, 8352: 2425714, 8354: 2434679, 8355: 2434863, 8361: 2435033}
[2025-06-05 16:12:33] 2025-06-05 14:11:48,120 | INFO     | --------------------------------------------------
[2025-06-05 16:12:33] 2025-06-05 14:11:48,120 | INFO     | 
[2025-06-05 16:12:33] 2025-06-05 14:11:48,120 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-06-05 16:12:33] 2025-06-05 14:11:48,147 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,147 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,147 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,147 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,147 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,147 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,148 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,148 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,148 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,148 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,148 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,148 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,148 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,148 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,148 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,148 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,148 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,148 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 16:12:33] 2025-06-05 14:11:48,149 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,149 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 16:12:33] 2025-06-05 14:11:48,149 | INFO     | job 6677921532 has completed (purged errors)
[2025-06-05 16:12:33] 2025-06-05 14:11:48,149 | INFO     | overall cleanup function is called
[2025-06-05 16:12:33] 2025-06-05 14:11:49,158 | INFO     | --- collectZombieJob: --- 10, [4186941]
[2025-06-05 16:12:33] 2025-06-05 14:11:49,159 | INFO     | zombie collector waiting for pid 4186941
[2025-06-05 16:12:33] 2025-06-05 14:11:49,159 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 16:12:33] 2025-06-05 14:11:49,159 | INFO     | collected zombie processes
[2025-06-05 16:12:33] 2025-06-05 14:11:49,159 | INFO     | will attempt to kill all subprocesses of pid=4186941
[2025-06-05 16:12:33] 2025-06-05 14:11:51,265 | INFO     | PID=4155278 has CPU usage=27.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-05 16:12:33] 2025-06-05 14:11:51,266 | INFO     | .. there are 12 such processes running
[2025-06-05 16:12:33] 2025-06-05 14:11:51,302 | INFO     | process IDs to be killed: [4186941] (in reverse order)
[2025-06-05 16:12:33] 2025-06-05 14:11:51,531 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 16:12:33] 2025-06-05 14:11:51,532 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 16:12:33] 2025-06-05 14:11:51,561 | INFO     | did not find any defunct processes belonging to 4186941
[2025-06-05 16:12:33] 2025-06-05 14:11:51,589 | INFO     | did not find any defunct processes belonging to 4186941
[2025-06-05 16:12:33] 2025-06-05 14:11:51,590 | INFO     | ready for new job
[2025-06-05 16:12:33] 2025-06-05 14:11:51,590 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 16:12:33] 2025-06-05 14:11:51,592 | INFO     | **************************************
[2025-06-05 16:12:33] 2025-06-05 14:11:51,592 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 16:12:33] 2025-06-05 14:11:51,592 | INFO     | **************************************
[2025-06-05 16:12:33] 2025-06-05 14:11:51,592 | INFO     | 
[2025-06-05 16:12:33] 2025-06-05 14:11:51,600 | INFO     | architecture information:
[2025-06-05 16:12:33] 2025-06-05 14:11:51,600 | INFO     | executing command: cat /etc/os-release
[2025-06-05 16:12:33] 2025-06-05 14:11:51,627 | INFO     | cat /etc/os-release:
[2025-06-05 16:12:33] NAME="CentOS Linux"
[2025-06-05 16:12:33] VERSION="7 (Core)"
[2025-06-05 16:12:33] ID="centos"
[2025-06-05 16:12:33] ID_LIKE="rhel fedora"
[2025-06-05 16:12:33] VERSION_ID="7"
[2025-06-05 16:12:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 16:12:33] ANSI_COLOR="0;31"
[2025-06-05 16:12:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 16:12:33] HOME_URL="https://www.centos.org/"
[2025-06-05 16:12:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 16:12:33] 
[2025-06-05 16:12:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 16:12:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 16:12:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 16:12:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 16:12:33] 
[2025-06-05 16:12:33] 2025-06-05 14:11:51,628 | INFO     | **************************************
[2025-06-05 16:12:33] 2025-06-05 14:11:52,131 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-06-05 16:12:33] 2025-06-05 14:11:52,155 | INFO     | sufficient remaining disk space (3273352282112 B)
[2025-06-05 16:12:33] 2025-06-05 14:11:52,155 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 16:12:33] 2025-06-05 14:11:52,156 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 16:12:33] 2025-06-05 14:11:52,156 | INFO     | update_server=False
[2025-06-05 16:12:33] 2025-06-05 14:11:52,156 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 16:12:33] 2025-06-05 14:11:52,156 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 16:12:33] 2025-06-05 14:11:52,157 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 16:12:33] 2025-06-05 14:11:52,157 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 16:12:33] 2025-06-05 14:11:52,157 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 16:12:33] 2025-06-05 14:11:52,158 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 16:12:33] 2025-06-05 14:11:52,157 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 16:12:33] 2025-06-05 14:11:52,346 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 16:12:33] 2025-06-05 14:11:52,347 | INFO     | aborting loop
[2025-06-05 16:12:33] 2025-06-05 14:11:53,130 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 16:12:33] 2025-06-05 14:11:53,161 | INFO     | [job] retrieve thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:53,188 | INFO     | [payload] failed_post thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:53,229 | INFO     | all data control threads have been joined
[2025-06-05 16:12:33] 2025-06-05 14:11:53,348 | INFO     | [job] job monitor thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:53,425 | INFO     | all payload control threads have been joined
[2025-06-05 16:12:33] 2025-06-05 14:11:53,466 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:53,681 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:53,690 | INFO     | [job] validate thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:53,754 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:53,828 | INFO     | all job control threads have been joined
[2025-06-05 16:12:33] 2025-06-05 14:11:53,858 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:54,135 | INFO     | [job] queue monitor thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:54,163 | INFO     | [data] copytool_out thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:54,234 | INFO     | [data] control thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:54,428 | INFO     | [payload] control thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:54,496 | INFO     | [data] copytool_in thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:54,649 | INFO     | [payload] validate_post thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:54,834 | INFO     | [job] control thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:56,164 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 16:12:33] 2025-06-05 14:11:57,450 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22792078747456)>', '<ExcThread(monitor, started 22791774521088)>']
[2025-06-05 16:12:33] 2025-06-05 14:11:58,172 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 16:12:33] 2025-06-05 14:11:58,172 | INFO     | [monitor] control thread has ended
[2025-06-05 16:12:33] 2025-06-05 14:12:02,476 | INFO     | all workflow threads have been joined
[2025-06-05 16:12:33] 2025-06-05 14:12:02,476 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 16:12:33] 2025-06-05 14:12:02,476 | INFO     | traces error code: 0
[2025-06-05 16:12:33] 2025-06-05 14:12:02,476 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 16:12:33] 2025-06-05 14:12:02,674 [wrapper] ==== pilot stdout END ====
[2025-06-05 16:12:33] 2025-06-05 14:12:02,678 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 16:12:33] 2025-06-05 14:12:02,682 [wrapper] pilotpid: 4155278
[2025-06-05 16:12:33] 2025-06-05 14:12:02,687 [wrapper] Pilot exit status: 0
[2025-06-05 16:12:33] 2025-06-05 14:12:02,703 [wrapper] pandaids: 6677921532
[2025-06-05 16:12:33] 2025-06-05 14:12:02,859 [wrapper] cleanup supervisor_pilot  472647 4155279
[2025-06-05 16:12:33] 2025-06-05 14:12:02,864 [wrapper] Test setup, not cleaning
[2025-06-05 16:12:33] 2025-06-05 14:12:02,869 [wrapper] apfmon messages muted
[2025-06-05 16:12:33] 2025-06-05 14:12:02,873 [wrapper] ==== wrapper stdout END ====
[2025-06-05 16:12:33] 2025-06-05 14:12:02,877 [wrapper] ==== wrapper stderr END ====
[2025-06-05 16:12:33]  *** Error codes and diagnostics ***
[2025-06-05 16:12:33]     "exeErrorCode": 0,
[2025-06-05 16:12:33]     "exeErrorDiag": "",
[2025-06-05 16:12:33]     "pilotErrorCode": 0,
[2025-06-05 16:12:33]     "pilotErrorDiag": "",
[2025-06-05 16:12:33]  *** Listing of results directory ***
[2025-06-05 16:12:33] total 390512
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc    495897 Jun  3 20:41 pilot3.tar.gz
[2025-06-05 16:12:33] -rwx------ 1 boinc boinc     37140 Jun  3 20:47 runpilot2-wrapper.sh
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc      5111 Jun  3 20:47 queuedata.json
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc       100 Jun  5 13:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 16:12:33] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 13:51 run_atlas
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc       105 Jun  5 13:51 job.xml
[2025-06-05 16:12:33] -rw-r--r-- 2 boinc boinc 212610329 Jun  5 13:51 EVNT.45006593._001714.pool.root.1
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc      6687 Jun  5 13:51 init_data.xml
[2025-06-05 16:12:33] -rw-r--r-- 2 boinc boinc     15093 Jun  5 13:51 start_atlas.sh
[2025-06-05 16:12:33] drwxrwx--x 2 boinc boinc      4096 Jun  5 13:51 shared
[2025-06-05 16:12:33] -rw-r--r-- 2 boinc boinc    508880 Jun  5 13:51 input.tar.gz
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc         0 Jun  5 13:51 boinc_lockfile
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc      2524 Jun  5 13:51 pandaJob.out
[2025-06-05 16:12:33] -rw------- 1 boinc boinc    982836 Jun  5 13:52 agis_schedconf.cvmfs.json
[2025-06-05 16:12:33] -rw------- 1 boinc boinc   1598969 Jun  5 13:52 agis_ddmendpoints.agis.ALL.json
[2025-06-05 16:12:33] drwx------ 4 boinc boinc      4096 Jun  5 13:52 pilot3
[2025-06-05 16:12:33] -rw------- 1 boinc boinc 181274154 Jun  5 16:11 HITS.45006595._042743.pool.root.1
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc       529 Jun  5 16:11 boinc_task_state.xml
[2025-06-05 16:12:33] -rw------- 1 boinc boinc      1029 Jun  5 16:11 memory_monitor_summary.json
[2025-06-05 16:12:33] -rw------- 1 boinc boinc    289814 Jun  5 16:11 log.45006595._042743.job.log.tgz.1
[2025-06-05 16:12:33] -rw------- 1 boinc boinc        95 Jun  5 16:11 pilot_heartbeat.json
[2025-06-05 16:12:33] -rw------- 1 boinc boinc      7689 Jun  5 16:11 heartbeat.json
[2025-06-05 16:12:33] -rw------- 1 boinc boinc      4488 Jun  5 16:12 pilotlog.txt
[2025-06-05 16:12:33] -rw------- 1 boinc boinc    795795 Jun  5 16:12 log.45006595._042743.job.log.1
[2025-06-05 16:12:33] -rw------- 1 boinc boinc       357 Jun  5 16:12 output.list
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc       620 Jun  5 16:12 runtime_log
[2025-06-05 16:12:33] -rw------- 1 boinc boinc   1105920 Jun  5 16:12 result.tar.gz
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc      9040 Jun  5 16:12 runtime_log.err
[2025-06-05 16:12:33] -rw------- 1 boinc boinc       662 Jun  5 16:12 n4FMDmIqlg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmAcZKDmq4d3Fm.diag
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc        27 Jun  5 16:12 wrapper_checkpoint.txt
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc      8192 Jun  5 16:12 boinc_mmap_file
[2025-06-05 16:12:33] -rw-r--r-- 1 boinc boinc     20728 Jun  5 16:12 stderr.txt
[2025-06-05 16:12:33] HITS file was successfully produced:
[2025-06-05 16:12:33] -rw------- 1 boinc boinc 181274154 Jun  5 16:11 shared/HITS.pool.root.1
[2025-06-05 16:12:33]  *** Contents of shared directory: ***
[2025-06-05 16:12:33] total 386260
[2025-06-05 16:12:33] -rw-r--r-- 2 boinc boinc 212610329 Jun  5 13:51 ATLAS.root_0
[2025-06-05 16:12:33] -rw-r--r-- 2 boinc boinc     15093 Jun  5 13:51 start_atlas.sh
[2025-06-05 16:12:33] -rw-r--r-- 2 boinc boinc    508880 Jun  5 13:51 input.tar.gz
[2025-06-05 16:12:33] -rw------- 1 boinc boinc 181274154 Jun  5 16:11 HITS.pool.root.1
[2025-06-05 16:12:33] -rw------- 1 boinc boinc   1105920 Jun  5 16:12 result.tar.gz
16:12:34 (4145730): run_atlas exited; CPU time 31980.663586
16:12:34 (4145730): called boinc_finish(0)

</stderr_txt>
]]>

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