Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:38:37 (844): wrapper (7.7.26015): starting
20:38:37 (844): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 20:38:37] Arguments: --nthreads 8
[2025-06-03 20:38:37] Threads: 8
[2025-06-03 20:38:37] Checking for CVMFS
[2025-06-03 20:38:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:38:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:38:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:38:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:38:37] 2.11.2.0 2979 34925 73252 146762 3 57 13041040 20275201 1 130560 0 11056968 99.981 5685333 7123 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 20:38:37] CVMFS is ok
[2025-06-03 20:38:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 20:38:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 20:38:37] Further information can be found at the LHC@home message board.
[2025-06-03 20:38:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:38:37] Checking for apptainer binary...
[2025-06-03 20:38:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:38:37] Running /usr/bin/apptainer --version
[2025-06-03 20:38:37] apptainer version 1.3.2-1.el7
[2025-06-03 20:38:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:38:39] c-115-8.aglt2.org
[2025-06-03 20:38:39] apptainer works
[2025-06-03 20:38:39] Set ATHENA_PROC_NUMBER=8
[2025-06-03 20:38:39] Set ATHENA_CORE_NUMBER=8
[2025-06-03 20:38:39] Starting ATLAS job with PandaID=6677920669
[2025-06-03 20:38:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 22:18:27]  *** The last 200 lines of the pilot log: ***
[2025-06-03 22:18:27]  lfn=log.45006595._042221.job.log.tgz.1
[2025-06-03 22:18:27]  mtime=0
[2025-06-03 22:18:27]  protocol_id=None
[2025-06-03 22:18:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 22:18:27]  replicas=None
[2025-06-03 22:18:27]  scope=mc23_13p6TeV
[2025-06-03 22:18:27]  status=None
[2025-06-03 22:18:27]  status_code=0
[2025-06-03 22:18:27]  storage_token=
[2025-06-03 22:18:27]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6677920669/log.45006595._042221.job.log.tgz.1
[2025-06-03 22:18:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/00/log.45006595._042221.job.log.tgz.1
[2025-06-03 22:18:27]  workdir=None
[2025-06-03 22:18:27] ]
[2025-06-03 22:18:27] 2025-06-04 02:17:57,632 | INFO     | transferring file log.45006595._042221.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6677920669/log.45006595._042221.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 22:18:27] 2025-06-04 02:17:57,633 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6677920669/log.45006595._042221.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._042221.job
[2025-06-03 22:18:27] 2025-06-04 02:17:57,658 | INFO     | adding to output.list: log.45006595._042221.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ba/00/log.45006595._042221.job.log.tg
[2025-06-03 22:18:27] 2025-06-04 02:17:57,659 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 22:18:27] 2025-06-04 02:17:57,659 | INFO     | summary of transferred files:
[2025-06-03 22:18:27] 2025-06-04 02:17:57,659 | INFO     |  -- lfn=log.45006595._042221.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 22:18:27] 2025-06-04 02:17:57,660 | INFO     | stage-out finished correctly
[2025-06-03 22:18:27] 2025-06-04 02:17:58,088 | INFO     | monitor loop #440: job 0:6677920669 is in state 'finished'
[2025-06-03 22:18:27] 2025-06-04 02:17:58,088 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 22:18:27] 2025-06-04 02:18:00,592 | INFO     | monitor loop #441: job 0:6677920669 is in state 'finished'
[2025-06-03 22:18:27] 2025-06-04 02:18:00,592 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 22:18:27] 2025-06-04 02:18:00,792 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 22:18:27] 2025-06-04 02:18:01,074 | INFO     | job 6677920669 has state=finished
[2025-06-03 22:18:27] 2025-06-04 02:18:01,075 | INFO     | preparing for final server update for job 6677920669 in state='finished'
[2025-06-03 22:18:27] 2025-06-04 02:18:01,075 | INFO     | this job has now completed (state=finished)
[2025-06-03 22:18:27] 2025-06-04 02:18:01,075 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 22:18:27] 2025-06-04 02:18:01,076 | INFO     | log transfer has been attempted: DONE
[2025-06-03 22:18:27] 2025-06-04 02:18:01,076 | INFO     | job 6677920669 has finished - writing final server update
[2025-06-03 22:18:27] 2025-06-04 02:18:01,076 | INFO     | total number of processed events: 400 (read)
[2025-06-03 22:18:27] 2025-06-04 02:18:01,080 | INFO     | executing command: lscpu
[2025-06-03 22:18:27] 2025-06-04 02:18:01,113 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 22:18:27] 2025-06-04 02:18:03,095 | INFO     | monitor loop #442: job 0:6677920669 is in state 'finished'
[2025-06-03 22:18:27] 2025-06-04 02:18:03,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 22:18:27] 2025-06-04 02:18:05,599 | INFO     | monitor loop #443: job 0:6677920669 is in state 'finished'
[2025-06-03 22:18:27] 2025-06-04 02:18:05,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 22:18:27] 2025-06-04 02:18:06,615 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-03 22:18:27] 2025-06-04 02:18:06,615 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677920669/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 22:18:27] 2025-06-04 02:18:06,616 | INFO     | extracted standard info from prmon json
[2025-06-03 22:18:27] 2025-06-04 02:18:06,617 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 22:18:27] 2025-06-04 02:18:06,617 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 22:18:27] 2025-06-04 02:18:06,617 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 22:18:27] 2025-06-04 02:18:06,618 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 22:18:27] 2025-06-04 02:18:06,621 | INFO     | fitting pss+swap vs Time
[2025-06-03 22:18:27] 2025-06-04 02:18:06,621 | INFO     | sum of square deviations: 226022842.5
[2025-06-03 22:18:27] 2025-06-04 02:18:06,621 | INFO     | sum of deviations: -14365101547.999994
[2025-06-03 22:18:27] 2025-06-04 02:18:06,622 | INFO     | mean x: 1749000586.5
[2025-06-03 22:18:27] 2025-06-04 02:18:06,622 | INFO     | mean y: 2577423.9777777777
[2025-06-03 22:18:27] 2025-06-04 02:18:06,622 | INFO     | -- intersect: 111162010491.38577
[2025-06-03 22:18:27] 2025-06-04 02:18:06,622 | INFO     | intersect: 111162010491.38577
[2025-06-03 22:18:27] 2025-06-04 02:18:06,622 | INFO     | chi2: 0.08722800948642098
[2025-06-03 22:18:27] 2025-06-04 02:18:06,623 | INFO     | -- intersect: 111162010491.38577
[2025-06-03 22:18:27] 2025-06-04 02:18:06,623 | INFO     | current memory leak: -63.56 B/s (using 90 data points, chi2=0.09)
[2025-06-03 22:18:27] 2025-06-04 02:18:06,623 | INFO     | ..............................
[2025-06-03 22:18:27] 2025-06-04 02:18:06,624 | INFO     | . Timing measurements:
[2025-06-03 22:18:27] 2025-06-04 02:18:06,624 | INFO     | . get job = 0 s
[2025-06-03 22:18:27] 2025-06-04 02:18:06,624 | INFO     | . initial setup = 2 s
[2025-06-03 22:18:27] 2025-06-04 02:18:06,624 | INFO     | . payload setup = 10 s
[2025-06-03 22:18:27] 2025-06-04 02:18:06,624 | INFO     | . stage-in = 0 s
[2025-06-03 22:18:27] 2025-06-04 02:18:06,624 | INFO     | . payload execution = 5911 s
[2025-06-03 22:18:27] 2025-06-04 02:18:06,624 | INFO     | . stage-out = 0 s
[2025-06-03 22:18:27] 2025-06-04 02:18:06,624 | INFO     | . log creation = 0 s
[2025-06-03 22:18:27] 2025-06-04 02:18:06,625 | INFO     | ..............................
[2025-06-03 22:18:27] 2025-06-04 02:18:06,713 | INFO     | 
[2025-06-03 22:18:27] 2025-06-04 02:18:06,713 | INFO     | job summary report
[2025-06-03 22:18:27] 2025-06-04 02:18:06,713 | INFO     | --------------------------------------------------
[2025-06-03 22:18:27] 2025-06-04 02:18:06,713 | INFO     | PanDA job id: 6677920669
[2025-06-03 22:18:27] 2025-06-04 02:18:06,714 | INFO     | task id: 45006595
[2025-06-03 22:18:27] 2025-06-04 02:18:06,714 | INFO     | errors: (none)
[2025-06-03 22:18:27] 2025-06-04 02:18:06,714 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 22:18:27] 2025-06-04 02:18:06,714 | INFO     | pilot state: finished 
[2025-06-03 22:18:27] 2025-06-04 02:18:06,714 | INFO     | transexitcode: 0
[2025-06-03 22:18:27] 2025-06-04 02:18:06,714 | INFO     | exeerrorcode: 0
[2025-06-03 22:18:27] 2025-06-04 02:18:06,715 | INFO     | exeerrordiag: 
[2025-06-03 22:18:27] 2025-06-04 02:18:06,715 | INFO     | exitcode: 0
[2025-06-03 22:18:27] 2025-06-04 02:18:06,715 | INFO     | exitmsg: OK
[2025-06-03 22:18:27] 2025-06-04 02:18:06,715 | INFO     | cpuconsumptiontime: 43845 s
[2025-06-03 22:18:27] 2025-06-04 02:18:06,715 | INFO     | nevents: 400
[2025-06-03 22:18:27] 2025-06-04 02:18:06,715 | INFO     | neventsw: 0
[2025-06-03 22:18:27] 2025-06-04 02:18:06,716 | INFO     | pid: 11242
[2025-06-03 22:18:27] 2025-06-04 02:18:06,716 | INFO     | pgrp: 11242
[2025-06-03 22:18:27] 2025-06-04 02:18:06,716 | INFO     | corecount: 8
[2025-06-03 22:18:27] 2025-06-04 02:18:06,716 | INFO     | event service: False
[2025-06-03 22:18:27] 2025-06-04 02:18:06,716 | INFO     | sizes: {0: 2404356, 1: 2405212, 7: 2405418, 12: 2405446, 5925: 2431991, 5926: 2431990, 5927: 2441115, 5930: 2441171, 5936: 2441341}
[2025-06-03 22:18:27] 2025-06-04 02:18:06,716 | INFO     | --------------------------------------------------
[2025-06-03 22:18:27] 2025-06-04 02:18:06,717 | INFO     | 
[2025-06-03 22:18:27] 2025-06-04 02:18:06,717 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 22:18:27] 2025-06-04 02:18:06,746 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,746 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,746 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,746 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,747 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,747 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,747 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,747 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,747 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,748 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,748 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,748 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,748 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,748 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,749 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,749 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,749 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,749 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 22:18:27] 2025-06-04 02:18:06,749 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,749 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 22:18:27] 2025-06-04 02:18:06,750 | INFO     | job 6677920669 has completed (purged errors)
[2025-06-03 22:18:27] 2025-06-04 02:18:06,750 | INFO     | overall cleanup function is called
[2025-06-03 22:18:27] 2025-06-04 02:18:07,758 | INFO     | --- collectZombieJob: --- 10, [11242]
[2025-06-03 22:18:27] 2025-06-04 02:18:07,758 | INFO     | zombie collector waiting for pid 11242
[2025-06-03 22:18:27] 2025-06-04 02:18:07,758 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 22:18:27] 2025-06-04 02:18:07,758 | INFO     | collected zombie processes
[2025-06-03 22:18:27] 2025-06-04 02:18:07,759 | INFO     | will attempt to kill all subprocesses of pid=11242
[2025-06-03 22:18:27] 2025-06-04 02:18:07,841 | INFO     | process IDs to be killed: [11242] (in reverse order)
[2025-06-03 22:18:27] 2025-06-04 02:18:07,896 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 22:18:27] 2025-06-04 02:18:07,897 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 22:18:27] 2025-06-04 02:18:07,900 | INFO     | did not find any defunct processes belonging to 11242
[2025-06-03 22:18:27] 2025-06-04 02:18:07,903 | INFO     | did not find any defunct processes belonging to 11242
[2025-06-03 22:18:27] 2025-06-04 02:18:07,903 | INFO     | ready for new job
[2025-06-03 22:18:27] 2025-06-04 02:18:07,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 22:18:27] 2025-06-04 02:18:07,904 | INFO     | **************************************
[2025-06-03 22:18:27] 2025-06-04 02:18:07,904 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 22:18:27] 2025-06-04 02:18:07,904 | INFO     | **************************************
[2025-06-03 22:18:27] 2025-06-04 02:18:07,905 | INFO     | 
[2025-06-03 22:18:27] 2025-06-04 02:18:07,905 | INFO     | architecture information:
[2025-06-03 22:18:27] 2025-06-04 02:18:07,906 | INFO     | executing command: cat /etc/os-release
[2025-06-03 22:18:27] 2025-06-04 02:18:07,923 | INFO     | cat /etc/os-release:
[2025-06-03 22:18:27] NAME="CentOS Linux"
[2025-06-03 22:18:27] VERSION="7 (Core)"
[2025-06-03 22:18:27] ID="centos"
[2025-06-03 22:18:27] ID_LIKE="rhel fedora"
[2025-06-03 22:18:27] VERSION_ID="7"
[2025-06-03 22:18:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 22:18:27] ANSI_COLOR="0;31"
[2025-06-03 22:18:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 22:18:27] HOME_URL="https://www.centos.org/"
[2025-06-03 22:18:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 22:18:27] 
[2025-06-03 22:18:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 22:18:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 22:18:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 22:18:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 22:18:27] 
[2025-06-03 22:18:27] 2025-06-04 02:18:07,924 | INFO     | **************************************
[2025-06-03 22:18:27] 2025-06-04 02:18:08,080 | INFO     | PID=4673 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-03 22:18:27] 2025-06-04 02:18:08,427 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 22:18:27] 2025-06-04 02:18:08,448 | INFO     | sufficient remaining disk space (18654167040 B)
[2025-06-03 22:18:27] 2025-06-04 02:18:08,449 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 22:18:27] 2025-06-04 02:18:08,449 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 22:18:27] 2025-06-04 02:18:08,450 | INFO     | update_server=False
[2025-06-03 22:18:27] 2025-06-04 02:18:08,450 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 22:18:27] 2025-06-04 02:18:08,450 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 22:18:27] 2025-06-04 02:18:08,450 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 22:18:27] 2025-06-04 02:18:08,451 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 22:18:27] 2025-06-04 02:18:08,451 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 22:18:27] 2025-06-04 02:18:08,452 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 22:18:27] 2025-06-04 02:18:08,452 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 22:18:27] 2025-06-04 02:18:09,105 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 22:18:27] 2025-06-04 02:18:09,106 | INFO     | aborting loop
[2025-06-03 22:18:27] 2025-06-04 02:18:09,282 | INFO     | all job control threads have been joined
[2025-06-03 22:18:27] 2025-06-04 02:18:09,296 | INFO     | all payload control threads have been joined
[2025-06-03 22:18:27] 2025-06-04 02:18:09,455 | INFO     | [job] queue monitor thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:09,455 | INFO     | [job] retrieve thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:09,524 | INFO     | all data control threads have been joined
[2025-06-03 22:18:27] 2025-06-04 02:18:10,063 | INFO     | [job] validate thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:10,099 | INFO     | [payload] failed_post thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:10,107 | INFO     | [job] job monitor thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:10,131 | INFO     | [data] copytool_in thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:10,165 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:10,284 | INFO     | [job] control thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:10,301 | INFO     | [payload] control thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:10,354 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:10,458 | INFO     | [data] copytool_out thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:10,526 | INFO     | [data] control thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:10,692 | INFO     | [payload] validate_post thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:10,750 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:11,384 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 22:18:27] 2025-06-04 02:18:15,390 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:18,772 | INFO     | job.realtimelogging is not enabled
[2025-06-03 22:18:27] 2025-06-04 02:18:19,776 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 22:18:27] 2025-06-04 02:18:21,705 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140067924924224)>', '<ExcThread(monitor, started 140067272128256)>']
[2025-06-03 22:18:27] 2025-06-04 02:18:22,517 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 22:18:27] 2025-06-04 02:18:22,518 | INFO     | [monitor] control thread has ended
[2025-06-03 22:18:27] 2025-06-04 02:18:26,731 | INFO     | all workflow threads have been joined
[2025-06-03 22:18:27] 2025-06-04 02:18:26,731 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 22:18:27] 2025-06-04 02:18:26,732 | INFO     | traces error code: 0
[2025-06-03 22:18:27] 2025-06-04 02:18:26,732 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 22:18:27] 2025-06-04 02:18:26,840 [wrapper] ==== pilot stdout END ====
[2025-06-03 22:18:27] 2025-06-04 02:18:26,845 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 22:18:27] 2025-06-04 02:18:26,850 [wrapper] pilotpid: 4673
[2025-06-03 22:18:27] 2025-06-04 02:18:26,855 [wrapper] Pilot exit status: 0
[2025-06-03 22:18:27] 2025-06-04 02:18:26,872 [wrapper] pandaids: 6677920669
[2025-06-03 22:18:27] 2025-06-04 02:18:26,916 [wrapper] cleanup supervisor_pilot  3696 4674
[2025-06-03 22:18:27] 2025-06-04 02:18:26,920 [wrapper] Test setup, not cleaning
[2025-06-03 22:18:27] 2025-06-04 02:18:26,925 [wrapper] apfmon messages muted
[2025-06-03 22:18:27] 2025-06-04 02:18:26,929 [wrapper] ==== wrapper stdout END ====
[2025-06-03 22:18:27] 2025-06-04 02:18:26,934 [wrapper] ==== wrapper stderr END ====
[2025-06-03 22:18:27]  *** Error codes and diagnostics ***
[2025-06-03 22:18:27]     "exeErrorCode": 0,
[2025-06-03 22:18:27]     "exeErrorDiag": "",
[2025-06-03 22:18:27]     "pilotErrorCode": 0,
[2025-06-03 22:18:27]     "pilotErrorDiag": "",
[2025-06-03 22:18:27]  *** Listing of results directory ***
[2025-06-03 22:18:27] total 383344
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 13:46 pilot3.tar.gz
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 14:26 queuedata.json
[2025-06-03 22:18:27] -rwx------ 1 boincer umatlas     37140 Jun  3 14:27 runpilot2-wrapper.sh
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas       100 Jun  3 20:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 22:18:27] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 20:38 run_atlas
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas       105 Jun  3 20:38 job.xml
[2025-06-03 22:18:27] -rw-r--r-- 2 boincer umatlas 213426457 Jun  3 20:38 EVNT.45006593._001693.pool.root.1
[2025-06-03 22:18:27] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 20:38 start_atlas.sh
[2025-06-03 22:18:27] drwxrwx--x 2 boincer umatlas      4096 Jun  3 20:38 shared
[2025-06-03 22:18:27] -rw-r--r-- 2 boincer umatlas    508882 Jun  3 20:38 input.tar.gz
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas         0 Jun  3 20:38 boinc_lockfile
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 20:38 pandaJob.out
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas    986069 Jun  3 20:38 agis_schedconf.cvmfs.json
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas   1603667 Jun  3 20:38 agis_ddmendpoints.agis.ALL.json
[2025-06-03 22:18:27] drwx------ 4 boincer umatlas      4096 Jun  3 20:38 pilot3
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas      5824 Jun  3 22:09 init_data.xml
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas        95 Jun  3 22:17 pilot_heartbeat.json
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas 173514814 Jun  3 22:17 HITS.45006595._042221.pool.root.1
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas       529 Jun  3 22:17 boinc_task_state.xml
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas      1049 Jun  3 22:17 memory_monitor_summary.json
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas    333143 Jun  3 22:17 log.45006595._042221.job.log.tgz.1
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas      7749 Jun  3 22:18 heartbeat.json
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 22:18 boinc_mmap_file
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas        27 Jun  3 22:18 wrapper_checkpoint.txt
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas      4864 Jun  3 22:18 pilotlog.txt
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas    552431 Jun  3 22:18 log.45006595._042221.job.log.1
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas       357 Jun  3 22:18 output.list
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas       620 Jun  3 22:18 runtime_log
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas    901120 Jun  3 22:18 result.tar.gz
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas      8654 Jun  3 22:18 runtime_log.err
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas       657 Jun  3 22:18 9PiLDmOXlg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnelKDmZifYqm.diag
[2025-06-03 22:18:27] -rw-r--r-- 1 boincer umatlas     21679 Jun  3 22:18 stderr.txt
[2025-06-03 22:18:27] HITS file was successfully produced:
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas 173514814 Jun  3 22:17 shared/HITS.pool.root.1
[2025-06-03 22:18:27]  *** Contents of shared directory: ***
[2025-06-03 22:18:27] total 379280
[2025-06-03 22:18:27] -rw-r--r-- 2 boincer umatlas 213426457 Jun  3 20:38 ATLAS.root_0
[2025-06-03 22:18:27] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 20:38 start_atlas.sh
[2025-06-03 22:18:27] -rw-r--r-- 2 boincer umatlas    508882 Jun  3 20:38 input.tar.gz
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas 173514814 Jun  3 22:17 HITS.pool.root.1
[2025-06-03 22:18:27] -rw------- 1 boincer umatlas    901120 Jun  3 22:18 result.tar.gz
22:18:28 (844): run_atlas exited; CPU time 43794.860285
22:18:28 (844): called boinc_finish(0)

</stderr_txt>
]]>

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