Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-03 21:54:06 (28028): Detected: vboxwrapper 26206
2025-06-03 21:54:06 (28028): Detected: BOINC client v8.0.2
2025-06-03 21:54:06 (28028): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-06-03 21:54:07 (28028): Successfully copied 'init_data.xml' to the shared directory.
2025-06-03 21:54:07 (28028): Create VM. (boinc_109fc7744b3241cc, slot#4)
2025-06-03 21:54:08 (28028): Setting Memory Size for VM. (4400MB)
2025-06-03 21:54:08 (28028): Setting CPU Count for VM. (4)
2025-06-03 21:54:08 (28028): Setting Chipset Options for VM.
2025-06-03 21:54:09 (28028): Setting Graphics Controller Options for VM.
2025-06-03 21:54:09 (28028): Setting Boot Options for VM.
2025-06-03 21:54:09 (28028): Setting Network Configuration for NAT.
2025-06-03 21:54:09 (28028): Enabling VM Network Access.
2025-06-03 21:54:10 (28028): Disabling USB Support for VM.
2025-06-03 21:54:10 (28028): Disabling COM Port Support for VM.
2025-06-03 21:54:10 (28028): Disabling LPT Port Support for VM.
2025-06-03 21:54:10 (28028): Disabling Audio Support for VM.
2025-06-03 21:54:11 (28028): Disabling Clipboard Support for VM.
2025-06-03 21:54:11 (28028): Disabling Drag and Drop Support for VM.
2025-06-03 21:54:11 (28028): Adding storage controller(s) to VM.
2025-06-03 21:54:11 (28028): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-03 21:54:14 (28028): Adding VirtualBox Guest Additions to VM.
2025-06-03 21:54:15 (28028): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-03 21:54:15 (28028): forwarding host port 56734 to guest port 80
2025-06-03 21:54:15 (28028): Enabling remote desktop for VM.
2025-06-03 21:54:15 (28028): Required extension pack not installed, remote desktop not enabled.
2025-06-03 21:54:15 (28028): Enabling shared directory for VM.
2025-06-03 21:54:16 (28028): Starting VM using VBoxManage interface. (boinc_109fc7744b3241cc, slot#4)
2025-06-03 21:54:20 (28028): Successfully started VM. (PID = '44768')
2025-06-03 21:54:20 (28028): Reporting VM Process ID to BOINC.
2025-06-03 21:54:20 (28028): Guest Log: BIOS: VirtualBox 7.1.8
2025-06-03 21:54:20 (28028): Guest Log: CPUID EDX: 0x178bfbff
2025-06-03 21:54:20 (28028): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-03 21:54:20 (28028): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-03 21:54:20 (28028): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-03 21:54:20 (28028): Detected: Web Application Enabled (http://localhost:56734)
2025-06-03 21:54:20 (28028): Preference change detected
2025-06-03 21:54:20 (28028): Setting CPU throttle for VM. (100%)
2025-06-03 21:54:20 (28028): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-03 21:54:22 (28028): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-03 21:54:22 (28028): Guest Log: BIOS: Booting from Hard Disk...
2025-06-03 21:54:24 (28028): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-03 21:54:24 (28028): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-03 21:54:24 (28028): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-03 21:54:29 (28028): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-03 21:54:29 (28028): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-03 21:54:31 (28028): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-03 21:54:31 (28028): Guest Log: 00:00:00.000089 main     Log opened 2025-06-03T21:54:30.091408000Z
2025-06-03 21:54:31 (28028): Guest Log: 00:00:00.000164 main     OS Product: Linux
2025-06-03 21:54:31 (28028): Guest Log: 00:00:00.000192 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-03 21:54:31 (28028): Guest Log: 00:00:00.000202 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-03 21:54:31 (28028): Guest Log: 00:00:00.000212 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-03 21:54:31 (28028): Guest Log: 00:00:00.000212 main     Process ID: 954
2025-06-03 21:54:31 (28028): Guest Log: 00:00:00.000213 main     Package type: LINUX_64BITS_GENERIC
2025-06-03 21:54:31 (28028): Guest Log: 00:00:00.000597 main     5.2.32 r132073 started. Verbose level = 0
2025-06-03 21:54:32 (28028): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-03 21:54:32 (28028): Guest Log: [INFO] Mounting shared directory
2025-06-03 21:54:32 (28028): Guest Log: [INFO] Checking for init_data.xml
2025-06-03 21:54:35 (28028): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-03 21:54:35 (28028): Guest Log: [INFO] Detected branch: prod
2025-06-03 21:54:36 (28028): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-03 21:54:36 (28028): Guest Log: Copying input files
2025-06-03 21:54:36 (28028): Guest Log: Copied input files into RunAtlas.
2025-06-03 21:54:36 (28028): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.233:3128 - will set in /etc/cvmfs/default.local
2025-06-03 21:54:41 (28028): Guest Log: 00:00:10.015339 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 211 283 894 000ns (GuestNow=1 749 012 881 376 757 000 ns GuestLast=1 748 987 670 092 863 000 ns fSetTimeLastLoop=true )
2025-06-03 21:54:44 (28028): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-03 21:54:44 (28028): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-03 21:54:44 (28028): Guest Log: 2.6.3.0 1582 0 31520 146768 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.0.233:3128 1
2025-06-03 21:54:44 (28028): Guest Log: copied the webapp to /var/www
2025-06-03 21:54:44 (28028): Guest Log: ATHENA_PROC_NUMBER=4
2025-06-03 21:54:44 (28028): Guest Log: ATHENA_CORE_NUMBER=4
2025-06-03 21:54:44 (28028): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-03 21:54:44 (28028): Guest Log:  *** Starting ATLAS job. (PandaID=6667103864 taskID=44871837) ***
2025-06-03 22:46:25 (28028): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 22:46:45 (28028): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 22:56:07 (28028): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 22:56:27 (28028): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 23:27:50 (28028): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 23:28:10 (28028): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 23:35:26 (28028): Status Report: Elapsed Time: '6000.000000'
2025-06-03 23:35:26 (28028): Status Report: CPU Time: '23082.187500'
2025-06-03 23:46:31 (28028): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 23:46:51 (28028): VM state change detected. (old = 'paused', new = 'running')
2025-06-03 23:58:23 (28028): VM state change detected. (old = 'running', new = 'paused')
2025-06-03 23:58:43 (28028): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 00:02:43 (28028): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 00:03:03 (28028): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 00:24:58 (28028): Guest Log:  *** Job finished ***
2025-06-04 00:24:58 (28028): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:48,032 | INFO     | [job] validate thread has finished
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:48,119 | INFO     | [payload] failed_post thread has finished
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:51,096 | INFO     | [data] queue_monitor thread has finished
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:52,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140609758611264)>', '<ExcThread(monitor, started 140608966485760)>']
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:52,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:52,701 | INFO     | [monitor] control thread has ended
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,523 | INFO     | all workflow threads have been joined
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,523 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,523 | INFO     | traces error code: 0
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,523 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,625 [wrapper] ==== pilot stdout END ====
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,628 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,631 [wrapper] pilotpid: 5876
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,633 [wrapper] Pilot exit status: 0
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,656 [wrapper] pandaids: 6667103864
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,674 [wrapper] cleanup supervisor_pilot  7566 5877
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,676 [wrapper] Test setup, not cleaning
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,679 [wrapper] apfmon messages muted
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,681 [wrapper] ==== wrapper stdout END ====
2025-06-04 00:24:58 (28028): Guest Log: 2025-06-04 07:22:57,684 [wrapper] ==== wrapper stderr END ====
2025-06-04 00:24:58 (28028): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 00:24:58 (28028): Guest Log:     "exeErrorCode": 0,
2025-06-04 00:24:58 (28028): Guest Log:     "exeErrorDiag": "",
2025-06-04 00:24:58 (28028): Guest Log:     "pilotErrorCode": 0,
2025-06-04 00:24:58 (28028): Guest Log:     "pilotErrorDiag": "",
2025-06-04 00:24:58 (28028): Guest Log:  *** Listing of results directory ***
2025-06-04 00:24:58 (28028): Guest Log: total 189888
2025-06-04 00:24:58 (28028): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 14:41 pilot3.tar.gz
2025-06-04 00:24:58 (28028): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 14:55 queuedata.json
2025-06-04 00:24:58 (28028): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 14:56 runpilot2-wrapper.sh
2025-06-04 00:24:58 (28028): Guest Log: -rwxr-xr-x. 1 atlas atlas     11928 Jun  4 04:54 init_data.xml
2025-06-04 00:24:58 (28028): Guest Log: -rwxr-xr-x. 1 atlas atlas    508879 Jun  4 04:54 input.tar.gz
2025-06-04 00:24:58 (28028): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 04:54 start_atlas.sh
2025-06-04 00:24:58 (28028): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 04:54 EVNT.44871834._002718.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 00:24:58 (28028): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  4 04:54 pandaJob.out
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas    986745 Jun  4 04:55 agis_schedconf.cvmfs.json
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  4 04:55 agis_ddmendpoints.agis.ALL.json
2025-06-04 00:24:58 (28028): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 04:55 pilot3
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas 188589141 Jun  4 07:22 HITS.44871837._069102.pool.root.1
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 07:22 pilot_heartbeat.json
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas      1038 Jun  4 07:22 memory_monitor_summary.json
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas    269783 Jun  4 07:22 log.44871837._069102.job.log.tgz.1
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas      7669 Jun  4 07:22 heartbeat.json
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas      4722 Jun  4 07:22 pilotlog.txt
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas    776137 Jun  4 07:22 log.44871837._069102.job.log.1
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 07:22 output.list
2025-06-04 00:24:58 (28028): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 07:22 runtime_log
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas   1064960 Jun  4 07:22 result.tar.gz
2025-06-04 00:24:58 (28028): Guest Log: -rw-r--r--. 1 atlas atlas      8585 Jun  4 07:22 runtime_log.err
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas       653 Jun  4 07:22 MuuLDmNuAe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmPyRKDmv4fR8m.diag
2025-06-04 00:24:58 (28028): Guest Log: Looking for outputfile HITS.44871837._069102.pool.root.1
2025-06-04 00:24:58 (28028): Guest Log: HITS file was successfully produced
2025-06-04 00:24:58 (28028): Guest Log: -rw-------. 1 atlas atlas 188589141 Jun  4 07:22 /home/atlas/RunAtlas/HITS.44871837._069102.pool.root.1
2025-06-04 00:24:58 (28028): Guest Log: Successfully finished the ATLAS job!
2025-06-04 00:24:58 (28028): Guest Log: Copying the results back to the shared directory!
2025-06-04 00:24:58 (28028): Guest Log:  *** Contents of shared directory: ***
2025-06-04 00:24:58 (28028): Guest Log: total 404732
2025-06-04 00:24:58 (28028): Guest Log: -rwxrwxrwx. 1 root root 224246926 Jun  4 04:54 ATLAS.root_0
2025-06-04 00:24:58 (28028): Guest Log: -rwxrwxrwx. 1 root root 188589141 Jun  4  2025 HITS.pool.root.1
2025-06-04 00:24:58 (28028): Guest Log: -rwxrwxrwx. 1 root root     11928 Jun  4 04:54 init_data.xml
2025-06-04 00:24:58 (28028): Guest Log: -rwxrwxrwx. 1 root root    508879 Jun  4 00:23 input.tar.gz
2025-06-04 00:24:58 (28028): Guest Log: -rwxrwxrwx. 1 root root   1064960 Jun  4  2025 result.tar.gz
2025-06-04 00:24:58 (28028): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 00:23 start_atlas.sh
2025-06-04 00:24:58 (28028): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 00:24:58 (28028): VM Completion File Detected.
2025-06-04 00:24:58 (28028): Powering off VM.
2025-06-04 00:24:58 (28028): Successfully stopped VM.
2025-06-04 00:24:58 (28028): Deregistering VM. (boinc_109fc7744b3241cc, slot#4)
2025-06-04 00:24:58 (28028): Removing network bandwidth throttle group from VM.
2025-06-04 00:24:58 (28028): Removing VM from VirtualBox.
00:25:04 (28028): called boinc_finish(0)

</stderr_txt>
]]>

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