Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
11:30:25 (76598): wrapper (7.7.26015): starting
11:30:25 (76598): wrapper: running run_atlas (--nthreads 3)
[2025-06-04 11:30:25] Arguments: --nthreads 3
[2025-06-04 11:30:25] Threads: 3
[2025-06-04 11:30:25] Checking for CVMFS
[2025-06-04 11:30:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:30:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:30:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:30:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:30:25] 2.9.2.0 3016 214 58508 146775 2 55 30501643 36864000 0 130560 0 199986 99.993 76532 49439 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 11:30:25] CVMFS is ok
[2025-06-04 11:30:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 11:30:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 11:30:25] Further information can be found at the LHC@home message board.
[2025-06-04 11:30:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:30:25] Checking for apptainer binary...
[2025-06-04 11:30:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:30:25] Running /usr/bin/apptainer --version
[2025-06-04 11:30:25] apptainer version 1.3.6-6.1
[2025-06-04 11:30:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:30:25] magicA252
[2025-06-04 11:30:25] apptainer works
[2025-06-04 11:30:25] Set ATHENA_PROC_NUMBER=3
[2025-06-04 11:30:25] Set ATHENA_CORE_NUMBER=3
[2025-06-04 11:30:25] Starting ATLAS job with PandaID=6678070874
[2025-06-04 11:30:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:40:24]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:40:24]  domain=
[2025-06-04 12:40:24]  filesize=227212
[2025-06-04 12:40:24]  filetype=log
[2025-06-04 12:40:24]  guid=00fcde2c-60e7-4bff-bc01-40a1f7cf5c4e
[2025-06-04 12:40:24]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 12:40:24]  is_altstaged=None
[2025-06-04 12:40:24]  is_tar=False
[2025-06-04 12:40:24]  lfn=log.45006595._044749.job.log.tgz.1
[2025-06-04 12:40:24]  mtime=0
[2025-06-04 12:40:24]  protocol_id=None
[2025-06-04 12:40:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 12:40:24]  replicas=None
[2025-06-04 12:40:24]  scope=mc23_13p6TeV
[2025-06-04 12:40:24]  status=None
[2025-06-04 12:40:24]  status_code=0
[2025-06-04 12:40:24]  storage_token=
[2025-06-04 12:40:24]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6678070874/log.45006595._044749.job.log.tgz.1
[2025-06-04 12:40:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/6a/log.45006595._044749.job.log.tgz.1
[2025-06-04 12:40:24]  workdir=None
[2025-06-04 12:40:24] ]
[2025-06-04 12:40:24] 2025-06-04 10:40:03,101 | INFO     | transferring file log.45006595._044749.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6678070874/log.45006595._044749.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 12:40:24] 2025-06-04 10:40:03,101 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6678070874/log.45006595._044749.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0447
[2025-06-04 12:40:24] 2025-06-04 10:40:03,115 | INFO     | adding to output.list: log.45006595._044749.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/6a/log.45006595._044749.job.log.tg
[2025-06-04 12:40:24] 2025-06-04 10:40:03,115 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 12:40:24] 2025-06-04 10:40:03,115 | INFO     | summary of transferred files:
[2025-06-04 12:40:24] 2025-06-04 10:40:03,115 | INFO     |  -- lfn=log.45006595._044749.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 12:40:24] 2025-06-04 10:40:03,116 | INFO     | stage-out finished correctly
[2025-06-04 12:40:24] 2025-06-04 10:40:03,146 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 12:40:24] 2025-06-04 10:40:03,173 | INFO     | job 6678070874 has state=finished
[2025-06-04 12:40:24] 2025-06-04 10:40:03,174 | INFO     | preparing for final server update for job 6678070874 in state='finished'
[2025-06-04 12:40:24] 2025-06-04 10:40:03,174 | INFO     | this job has now completed (state=finished)
[2025-06-04 12:40:24] 2025-06-04 10:40:03,174 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 12:40:24] 2025-06-04 10:40:03,174 | INFO     | log transfer has been attempted: DONE
[2025-06-04 12:40:24] 2025-06-04 10:40:03,174 | INFO     | job 6678070874 has finished - writing final server update
[2025-06-04 12:40:24] 2025-06-04 10:40:03,174 | INFO     | total number of processed events: 400 (read)
[2025-06-04 12:40:24] 2025-06-04 10:40:03,175 | INFO     | executing command: lscpu
[2025-06-04 12:40:24] 2025-06-04 10:40:03,188 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 12:40:24] 2025-06-04 10:40:03,809 | INFO     | monitor loop #323: job 0:6678070874 is in state 'finished'
[2025-06-04 12:40:24] 2025-06-04 10:40:03,809 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 12:40:24] 2025-06-04 10:40:05,607 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 12:40:24] 2025-06-04 10:40:05,608 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678070874/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 12:40:24] 2025-06-04 10:40:05,608 | INFO     | extracted standard info from prmon json
[2025-06-04 12:40:24] 2025-06-04 10:40:05,608 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 12:40:24] 2025-06-04 10:40:05,608 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 12:40:24] 2025-06-04 10:40:05,608 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 12:40:24] 2025-06-04 10:40:05,608 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 12:40:24] 2025-06-04 10:40:05,609 | INFO     | fitting pss+swap vs Time
[2025-06-04 12:40:24] 2025-06-04 10:40:05,609 | INFO     | sum of square deviations: 70364110.0
[2025-06-04 12:40:24] 2025-06-04 10:40:05,609 | INFO     | sum of deviations: -4834937958.0
[2025-06-04 12:40:24] 2025-06-04 10:40:05,609 | INFO     | mean x: 1749031587.0
[2025-06-04 12:40:24] 2025-06-04 10:40:05,609 | INFO     | mean y: 2569529.2622950817
[2025-06-04 12:40:24] 2025-06-04 10:40:05,609 | INFO     | -- intersect: 120183997386.83456
[2025-06-04 12:40:24] 2025-06-04 10:40:05,609 | INFO     | intersect: 120183997386.83456
[2025-06-04 12:40:24] 2025-06-04 10:40:05,609 | INFO     | chi2: 0.0416152304184458
[2025-06-04 12:40:24] 2025-06-04 10:40:05,609 | INFO     | -- intersect: 120183997386.83456
[2025-06-04 12:40:24] 2025-06-04 10:40:05,610 | INFO     | current memory leak: -68.71 B/s (using 61 data points, chi2=0.04)
[2025-06-04 12:40:24] 2025-06-04 10:40:05,610 | INFO     | ..............................
[2025-06-04 12:40:24] 2025-06-04 10:40:05,610 | INFO     | . Timing measurements:
[2025-06-04 12:40:24] 2025-06-04 10:40:05,610 | INFO     | . get job = 0 s
[2025-06-04 12:40:24] 2025-06-04 10:40:05,610 | INFO     | . initial setup = 1 s
[2025-06-04 12:40:24] 2025-06-04 10:40:05,610 | INFO     | . payload setup = 3 s
[2025-06-04 12:40:24] 2025-06-04 10:40:05,610 | INFO     | . stage-in = 0 s
[2025-06-04 12:40:24] 2025-06-04 10:40:05,610 | INFO     | . payload execution = 4151 s
[2025-06-04 12:40:24] 2025-06-04 10:40:05,610 | INFO     | . stage-out = 0 s
[2025-06-04 12:40:24] 2025-06-04 10:40:05,610 | INFO     | . log creation = 0 s
[2025-06-04 12:40:24] 2025-06-04 10:40:05,610 | INFO     | ..............................
[2025-06-04 12:40:24] 2025-06-04 10:40:05,736 | INFO     | 
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | job summary report
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | --------------------------------------------------
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | PanDA job id: 6678070874
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | task id: 45006595
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | errors: (none)
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | pilot state: finished 
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | transexitcode: 0
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | exeerrorcode: 0
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | exeerrordiag: 
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | exitcode: 0
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | exitmsg: OK
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | cpuconsumptiontime: 11852 s
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | nevents: 400
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | neventsw: 0
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | pid: 86731
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | pgrp: 86731
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | corecount: 3
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | event service: False
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | sizes: {0: 2405187, 3: 2405393, 11: 2405421, 4158: 2431317, 4159: 2440320, 4161: 2440434}
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | --------------------------------------------------
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | 
[2025-06-04 12:40:24] 2025-06-04 10:40:05,737 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 12:40:24] 2025-06-04 10:40:05,751 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | job 6678070874 has completed (purged errors)
[2025-06-04 12:40:24] 2025-06-04 10:40:05,752 | INFO     | overall cleanup function is called
[2025-06-04 12:40:24] 2025-06-04 10:40:06,759 | INFO     | --- collectZombieJob: --- 10, [86731]
[2025-06-04 12:40:24] 2025-06-04 10:40:06,759 | INFO     | zombie collector waiting for pid 86731
[2025-06-04 12:40:24] 2025-06-04 10:40:06,759 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:40:24] 2025-06-04 10:40:06,759 | INFO     | collected zombie processes
[2025-06-04 12:40:24] 2025-06-04 10:40:06,759 | INFO     | will attempt to kill all subprocesses of pid=86731
[2025-06-04 12:40:24] 2025-06-04 10:40:06,799 | INFO     | process IDs to be killed: [86731] (in reverse order)
[2025-06-04 12:40:24] 2025-06-04 10:40:06,823 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:40:24] 2025-06-04 10:40:06,823 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:40:24] 2025-06-04 10:40:06,824 | INFO     | did not find any defunct processes belonging to 86731
[2025-06-04 12:40:24] 2025-06-04 10:40:06,825 | INFO     | did not find any defunct processes belonging to 86731
[2025-06-04 12:40:24] 2025-06-04 10:40:06,825 | INFO     | ready for new job
[2025-06-04 12:40:24] 2025-06-04 10:40:06,826 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:40:24] 2025-06-04 10:40:06,826 | INFO     | **************************************
[2025-06-04 12:40:24] 2025-06-04 10:40:06,826 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:40:24] 2025-06-04 10:40:06,826 | INFO     | **************************************
[2025-06-04 12:40:24] 2025-06-04 10:40:06,826 | INFO     | 
[2025-06-04 12:40:24] 2025-06-04 10:40:06,827 | INFO     | architecture information:
[2025-06-04 12:40:24] 2025-06-04 10:40:06,827 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:40:24] 2025-06-04 10:40:06,836 | INFO     | cat /etc/os-release:
[2025-06-04 12:40:24] NAME="CentOS Linux"
[2025-06-04 12:40:24] VERSION="7 (Core)"
[2025-06-04 12:40:24] ID="centos"
[2025-06-04 12:40:24] ID_LIKE="rhel fedora"
[2025-06-04 12:40:24] VERSION_ID="7"
[2025-06-04 12:40:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:40:24] ANSI_COLOR="0;31"
[2025-06-04 12:40:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:40:24] HOME_URL="https://www.centos.org/"
[2025-06-04 12:40:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:40:24] 
[2025-06-04 12:40:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:40:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:40:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:40:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:40:24] 
[2025-06-04 12:40:24] 2025-06-04 10:40:06,836 | INFO     | **************************************
[2025-06-04 12:40:24] 2025-06-04 10:40:07,337 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 12:40:24] 2025-06-04 10:40:07,349 | INFO     | sufficient remaining disk space (369833803776 B)
[2025-06-04 12:40:24] 2025-06-04 10:40:07,349 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:40:24] 2025-06-04 10:40:07,350 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:40:24] 2025-06-04 10:40:07,350 | INFO     | update_server=False
[2025-06-04 12:40:24] 2025-06-04 10:40:07,350 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:40:24] 2025-06-04 10:40:07,350 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:40:24] 2025-06-04 10:40:07,350 | INFO     | aborting loop
[2025-06-04 12:40:24] 2025-06-04 10:40:07,350 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:40:24] 2025-06-04 10:40:07,350 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 12:40:24] 2025-06-04 10:40:07,350 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:40:24] 2025-06-04 10:40:07,350 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:40:24] 2025-06-04 10:40:07,350 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:40:24] 2025-06-04 10:40:07,822 | INFO     | all job control threads have been joined
[2025-06-04 12:40:24] 2025-06-04 10:40:08,034 | INFO     | all data control threads have been joined
[2025-06-04 12:40:24] 2025-06-04 10:40:08,119 | INFO     | all payload control threads have been joined
[2025-06-04 12:40:24] 2025-06-04 10:40:08,350 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:08,355 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:08,355 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:08,441 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:08,644 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:08,655 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:40:24] 2025-06-04 10:40:08,827 | INFO     | [job] control thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:09,040 | INFO     | [data] control thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:09,124 | INFO     | [payload] control thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:09,180 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:40:24] 2025-06-04 10:40:09,427 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:09,535 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:09,719 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:09,785 | INFO     | [job] validate thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:09,840 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:10,661 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:13,187 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:17,434 | INFO     | job.realtimelogging is not enabled
[2025-06-04 12:40:24] 2025-06-04 10:40:18,440 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:40:24] 2025-06-04 10:40:19,790 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140706480281408)>', '<ExcThread(monitor, started 140705460639488)>']
[2025-06-04 12:40:24] 2025-06-04 10:40:20,417 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:40:24] 2025-06-04 10:40:20,418 | INFO     | [monitor] control thread has ended
[2025-06-04 12:40:24] 2025-06-04 10:40:24,816 | INFO     | all workflow threads have been joined
[2025-06-04 12:40:24] 2025-06-04 10:40:24,816 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:40:24] 2025-06-04 10:40:24,816 | INFO     | traces error code: 0
[2025-06-04 12:40:24] 2025-06-04 10:40:24,816 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:40:24] 2025-06-04 10:40:24,863 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:40:24] 2025-06-04 10:40:24,866 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:40:24] 2025-06-04 10:40:24,869 [wrapper] pilotpid: 80232
[2025-06-04 12:40:24] 2025-06-04 10:40:24,871 [wrapper] Pilot exit status: 0
[2025-06-04 12:40:24] 2025-06-04 10:40:24,879 [wrapper] pandaids: 6678070874
[2025-06-04 12:40:24] 2025-06-04 10:40:24,896 [wrapper] cleanup supervisor_pilot   96114 80233
[2025-06-04 12:40:24] 2025-06-04 10:40:24,898 [wrapper] Test setup, not cleaning
[2025-06-04 12:40:24] 2025-06-04 10:40:24,901 [wrapper] apfmon messages muted
[2025-06-04 12:40:24] 2025-06-04 10:40:24,903 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:40:24] 2025-06-04 10:40:24,906 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:40:24]  *** Error codes and diagnostics ***
[2025-06-04 12:40:24]     "exeErrorCode": 0,
[2025-06-04 12:40:24]     "exeErrorDiag": "",
[2025-06-04 12:40:24]     "pilotErrorCode": 0,
[2025-06-04 12:40:24]     "pilotErrorDiag": "",
[2025-06-04 12:40:24]  *** Listing of results directory ***
[2025-06-04 12:40:24] total 382080
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc    495897 Jun  3 22:09 pilot3.tar.gz
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc      5111 Jun  3 22:16 queuedata.json
[2025-06-04 12:40:24] -rwx------ 1 boinc boinc     37140 Jun  3 22:17 runpilot2-wrapper.sh
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc       100 Jun  4 11:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:40:24] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 11:30 run_atlas
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc       105 Jun  4 11:30 job.xml
[2025-06-04 12:40:24] -rw-r--r-- 2 boinc boinc 212968513 Jun  4 11:30 EVNT.45006593._001794.pool.root.1
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc      6931 Jun  4 11:30 init_data.xml
[2025-06-04 12:40:24] drwxrwx--x 2 boinc boinc      4096 Jun  4 11:30 shared
[2025-06-04 12:40:24] -rw-r--r-- 2 boinc boinc    508884 Jun  4 11:30 input.tar.gz
[2025-06-04 12:40:24] -rw-r--r-- 2 boinc boinc     15093 Jun  4 11:30 start_atlas.sh
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc         0 Jun  4 11:30 boinc_lockfile
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc      2525 Jun  4 11:30 pandaJob.out
[2025-06-04 12:40:24] -rw------- 1 boinc boinc    986766 Jun  4 11:30 agis_schedconf.cvmfs.json
[2025-06-04 12:40:24] -rw------- 1 boinc boinc   1603667 Jun  4 11:30 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:40:24] drwx------ 4 boinc boinc      4096 Jun  4 11:30 pilot3
[2025-06-04 12:40:24] -rw------- 1 boinc boinc 173169537 Jun  4 12:39 HITS.45006595._044749.pool.root.1
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc       529 Jun  4 12:39 boinc_task_state.xml
[2025-06-04 12:40:24] -rw------- 1 boinc boinc        95 Jun  4 12:39 pilot_heartbeat.json
[2025-06-04 12:40:24] -rw------- 1 boinc boinc      1019 Jun  4 12:39 memory_monitor_summary.json
[2025-06-04 12:40:24] -rw------- 1 boinc boinc    227212 Jun  4 12:40 log.45006595._044749.job.log.tgz.1
[2025-06-04 12:40:24] -rw------- 1 boinc boinc      7654 Jun  4 12:40 heartbeat.json
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc      8192 Jun  4 12:40 boinc_mmap_file
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc        27 Jun  4 12:40 wrapper_checkpoint.txt
[2025-06-04 12:40:24] -rw------- 1 boinc boinc      4552 Jun  4 12:40 pilotlog.txt
[2025-06-04 12:40:24] -rw------- 1 boinc boinc    412041 Jun  4 12:40 log.45006595._044749.job.log.1
[2025-06-04 12:40:24] -rw------- 1 boinc boinc       357 Jun  4 12:40 output.list
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc       620 Jun  4 12:40 runtime_log
[2025-06-04 12:40:24] -rw------- 1 boinc boinc    655360 Jun  4 12:40 result.tar.gz
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc      8748 Jun  4 12:40 runtime_log.err
[2025-06-04 12:40:24] -rw------- 1 boinc boinc       661 Jun  4 12:40 GLKMDmNFng7n9Rq4apOajLDm4fhM0noT9bVof3QYDmrrZKDmvbqUIn.diag
[2025-06-04 12:40:24] -rw-r--r-- 1 boinc boinc     20958 Jun  4 12:40 stderr.txt
[2025-06-04 12:40:24] HITS file was successfully produced:
[2025-06-04 12:40:24] -rw------- 1 boinc boinc 173169537 Jun  4 12:39 shared/HITS.pool.root.1
[2025-06-04 12:40:24]  *** Contents of shared directory: ***
[2025-06-04 12:40:24] total 378256
[2025-06-04 12:40:24] -rw-r--r-- 2 boinc boinc 212968513 Jun  4 11:30 ATLAS.root_0
[2025-06-04 12:40:24] -rw-r--r-- 2 boinc boinc    508884 Jun  4 11:30 input.tar.gz
[2025-06-04 12:40:24] -rw-r--r-- 2 boinc boinc     15093 Jun  4 11:30 start_atlas.sh
[2025-06-04 12:40:24] -rw------- 1 boinc boinc 173169537 Jun  4 12:39 HITS.pool.root.1
[2025-06-04 12:40:24] -rw------- 1 boinc boinc    655360 Jun  4 12:40 result.tar.gz
12:40:26 (76598): run_atlas exited; CPU time 11858.534229
12:40:26 (76598): called boinc_finish(0)

</stderr_txt>
]]>

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