Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:10:09 (3803342): wrapper (7.7.26015): starting
20:10:09 (3803342): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 20:10:09] Arguments: --nthreads 8
[2025-06-03 20:10:09] Threads: 8
[2025-06-03 20:10:09] Checking for CVMFS
[2025-06-03 20:10:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 20:10:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 20:10:09] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 20:10:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 20:10:10] 2.12.6.0 7692 36568 163352 146761 2 746 32216081 40960000 40533 16776704 1 456885106 99.768 270029296 34462 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 20:10:10] CVMFS is ok
[2025-06-03 20:10:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 20:10:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 20:10:10] Further information can be found at the LHC@home message board.
[2025-06-03 20:10:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:10:10] Checking for apptainer binary...
[2025-06-03 20:10:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 20:10:10] Running /usr/bin/apptainer --version
[2025-06-03 20:10:10] apptainer version 1.4.1-1.el9
[2025-06-03 20:10:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:10:10] c8-7-4.aglt2.org
[2025-06-03 20:10:10] apptainer works
[2025-06-03 20:10:10] Set ATHENA_PROC_NUMBER=8
[2025-06-03 20:10:10] Set ATHENA_CORE_NUMBER=8
[2025-06-03 20:10:10] Starting ATLAS job with PandaID=6678016510
[2025-06-03 20:10:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 21:03:41]  *** The last 200 lines of the pilot log: ***
[2025-06-03 21:03:41]  status_code=0
[2025-06-03 21:03:41]  storage_token=
[2025-06-03 21:03:41]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6678016510/log.45006595._044636.job.log.tgz.1
[2025-06-03 21:03:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/d1/log.45006595._044636.job.log.tgz.1
[2025-06-03 21:03:41]  workdir=None
[2025-06-03 21:03:41] ]
[2025-06-03 21:03:41] 2025-06-04 01:03:21,063 | INFO     | transferring file log.45006595._044636.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6678016510/log.45006595._044636.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 21:03:41] 2025-06-04 01:03:21,063 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6678016510/log.45006595._044636.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._044636.job
[2025-06-03 21:03:41] 2025-06-04 01:03:21,081 | INFO     | adding to output.list: log.45006595._044636.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/d1/log.45006595._044636.job.log.tg
[2025-06-03 21:03:41] 2025-06-04 01:03:21,082 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 21:03:41] 2025-06-04 01:03:21,082 | INFO     | summary of transferred files:
[2025-06-03 21:03:41] 2025-06-04 01:03:21,082 | INFO     |  -- lfn=log.45006595._044636.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 21:03:41] 2025-06-04 01:03:21,083 | INFO     | stage-out finished correctly
[2025-06-03 21:03:41] 2025-06-04 01:03:21,138 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 21:03:41] 2025-06-04 01:03:23,141 | WARNING  | process 3822613 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 21:03:41] 2025-06-04 01:03:23,141 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678016510/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:03:41] 2025-06-04 01:03:23,142 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3657467 B
[2025-06-03 21:03:41] 2025-06-04 01:03:23,142 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15540 B
[2025-06-03 21:03:41] 2025-06-04 01:03:23,142 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-03 21:03:41] 2025-06-04 01:03:23,155 | INFO     | sufficient remaining disk space (171853217792 B)
[2025-06-03 21:03:41] 2025-06-04 01:03:23,156 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-06-03 21:03:41] 2025-06-04 01:03:23,156 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6678016510: 3946714 B (within 2537553920 B limit)
[2025-06-03 21:03:41] 2025-06-04 01:03:23,156 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6678016510/HITS.45006595._044636.pool.root.1 does not exist (skip from workdir size calculation)
[2025-06-03 21:03:41] 2025-06-04 01:03:23,156 | INFO     | total size of present files: 0 B (workdir size: 3946714 B)
[2025-06-03 21:03:41] 2025-06-04 01:03:23,156 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6678016510/HITS.45006595._044636.pool.root.1 since it does not exist
[2025-06-03 21:03:41] 2025-06-04 01:03:23,497 | INFO     | job 6678016510 has state=finished
[2025-06-03 21:03:41] 2025-06-04 01:03:23,500 | INFO     | preparing for final server update for job 6678016510 in state='finished'
[2025-06-03 21:03:41] 2025-06-04 01:03:23,500 | INFO     | this job has now completed (state=finished)
[2025-06-03 21:03:41] 2025-06-04 01:03:23,500 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 21:03:41] 2025-06-04 01:03:23,500 | INFO     | log transfer has been attempted: DONE
[2025-06-03 21:03:41] 2025-06-04 01:03:23,501 | INFO     | job 6678016510 has finished - writing final server update
[2025-06-03 21:03:41] 2025-06-04 01:03:23,501 | INFO     | total number of processed events: 400 (read)
[2025-06-03 21:03:41] 2025-06-04 01:03:23,521 | INFO     | executing command: lscpu
[2025-06-03 21:03:41] 2025-06-04 01:03:23,575 | INFO     | number of running child processes to parent process 3822613: 1
[2025-06-03 21:03:41] 2025-06-04 01:03:23,576 | INFO     | maximum number of monitored processes: 6
[2025-06-03 21:03:41] 2025-06-04 01:03:23,612 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 21:03:41] 2025-06-04 01:03:24,134 | INFO     | PID=3810862 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-03 21:03:41] 2025-06-04 01:03:24,135 | INFO     | .. there are 55 such processes running
[2025-06-03 21:03:41] 2025-06-04 01:03:26,079 | INFO     | monitor loop #228: job 0:6678016510 is in state 'finished'
[2025-06-03 21:03:41] 2025-06-04 01:03:26,080 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 21:03:41] 2025-06-04 01:03:27,652 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-03 21:03:41] 2025-06-04 01:03:27,653 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678016510/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:03:41] 2025-06-04 01:03:27,653 | INFO     | extracted standard info from prmon json
[2025-06-03 21:03:41] 2025-06-04 01:03:27,653 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 21:03:41] 2025-06-04 01:03:27,653 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 21:03:41] 2025-06-04 01:03:27,654 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 21:03:41] 2025-06-04 01:03:27,654 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 21:03:41] 2025-06-04 01:03:27,655 | INFO     | fitting pss+swap vs Time
[2025-06-03 21:03:41] 2025-06-04 01:03:27,655 | INFO     | sum of square deviations: 28242390.0
[2025-06-03 21:03:41] 2025-06-04 01:03:27,655 | INFO     | sum of deviations: 5088797388.0
[2025-06-03 21:03:41] 2025-06-04 01:03:27,655 | INFO     | mean x: 1748997496.0
[2025-06-03 21:03:41] 2025-06-04 01:03:27,655 | INFO     | mean y: 2401569.2666666666
[2025-06-03 21:03:41] 2025-06-04 01:03:27,655 | INFO     | -- intersect: -315137141835.64136
[2025-06-03 21:03:41] 2025-06-04 01:03:27,655 | INFO     | intersect: -315137141835.64136
[2025-06-03 21:03:41] 2025-06-04 01:03:27,655 | INFO     | chi2: 0.6771402399319635
[2025-06-03 21:03:41] 2025-06-04 01:03:27,655 | INFO     | -- intersect: -315137141835.64136
[2025-06-03 21:03:41] 2025-06-04 01:03:27,655 | INFO     | current memory leak: 180.18 B/s (using 45 data points, chi2=0.68)
[2025-06-03 21:03:41] 2025-06-04 01:03:27,656 | INFO     | ..............................
[2025-06-03 21:03:41] 2025-06-04 01:03:27,656 | INFO     | . Timing measurements:
[2025-06-03 21:03:41] 2025-06-04 01:03:27,656 | INFO     | . get job = 0 s
[2025-06-03 21:03:41] 2025-06-04 01:03:27,656 | INFO     | . initial setup = 2 s
[2025-06-03 21:03:41] 2025-06-04 01:03:27,656 | INFO     | . payload setup = 6 s
[2025-06-03 21:03:41] 2025-06-04 01:03:27,656 | INFO     | . stage-in = 0 s
[2025-06-03 21:03:41] 2025-06-04 01:03:27,656 | INFO     | . payload execution = 3152 s
[2025-06-03 21:03:41] 2025-06-04 01:03:27,656 | INFO     | . stage-out = 0 s
[2025-06-03 21:03:41] 2025-06-04 01:03:27,656 | INFO     | . log creation = 0 s
[2025-06-03 21:03:41] 2025-06-04 01:03:27,656 | INFO     | ..............................
[2025-06-03 21:03:41] 2025-06-04 01:03:28,099 | INFO     | 
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | job summary report
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | --------------------------------------------------
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | PanDA job id: 6678016510
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | task id: 45006595
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | errors: (none)
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | pilot state: finished 
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | transexitcode: 0
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | exeerrorcode: 0
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | exeerrordiag: 
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | exitcode: 0
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | exitmsg: OK
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | cpuconsumptiontime: 19912 s
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | nevents: 400
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | neventsw: 0
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | pid: 3822613
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | pgrp: 3822613
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | corecount: 8
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | event service: False
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | sizes: {0: 2405070, 1: 2405212, 5: 2405418, 11: 2405474, 3162: 2430946, 3163: 2440071, 3170: 2440213}
[2025-06-03 21:03:41] 2025-06-04 01:03:28,100 | INFO     | --------------------------------------------------
[2025-06-03 21:03:41] 2025-06-04 01:03:28,101 | INFO     | 
[2025-06-03 21:03:41] 2025-06-04 01:03:28,101 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-03 21:03:41] 2025-06-04 01:03:28,119 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,119 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,119 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,119 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,119 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,119 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,119 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,119 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,119 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,119 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,120 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,120 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,120 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,120 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,120 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,120 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,120 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,120 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 21:03:41] 2025-06-04 01:03:28,120 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,120 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 21:03:41] 2025-06-04 01:03:28,120 | INFO     | job 6678016510 has completed (purged errors)
[2025-06-03 21:03:41] 2025-06-04 01:03:28,120 | INFO     | overall cleanup function is called
[2025-06-03 21:03:41] 2025-06-04 01:03:29,128 | INFO     | --- collectZombieJob: --- 10, [3822613]
[2025-06-03 21:03:41] 2025-06-04 01:03:29,128 | INFO     | zombie collector waiting for pid 3822613
[2025-06-03 21:03:41] 2025-06-04 01:03:29,128 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 21:03:41] 2025-06-04 01:03:29,128 | INFO     | collected zombie processes
[2025-06-03 21:03:41] 2025-06-04 01:03:29,128 | INFO     | will attempt to kill all subprocesses of pid=3822613
[2025-06-03 21:03:41] 2025-06-04 01:03:29,557 | INFO     | process IDs to be killed: [3822613] (in reverse order)
[2025-06-03 21:03:41] 2025-06-04 01:03:29,732 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 21:03:41] 2025-06-04 01:03:29,733 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 21:03:41] 2025-06-04 01:03:29,757 | INFO     | did not find any defunct processes belonging to 3822613
[2025-06-03 21:03:41] 2025-06-04 01:03:29,780 | INFO     | did not find any defunct processes belonging to 3822613
[2025-06-03 21:03:41] 2025-06-04 01:03:29,781 | INFO     | ready for new job
[2025-06-03 21:03:41] 2025-06-04 01:03:29,781 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 21:03:41] 2025-06-04 01:03:29,782 | INFO     | **************************************
[2025-06-03 21:03:41] 2025-06-04 01:03:29,782 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 21:03:41] 2025-06-04 01:03:29,782 | INFO     | **************************************
[2025-06-03 21:03:41] 2025-06-04 01:03:29,782 | INFO     | 
[2025-06-03 21:03:41] 2025-06-04 01:03:29,787 | INFO     | architecture information:
[2025-06-03 21:03:41] 2025-06-04 01:03:29,787 | INFO     | executing command: cat /etc/os-release
[2025-06-03 21:03:41] 2025-06-04 01:03:29,803 | INFO     | cat /etc/os-release:
[2025-06-03 21:03:41] NAME="CentOS Linux"
[2025-06-03 21:03:41] VERSION="7 (Core)"
[2025-06-03 21:03:41] ID="centos"
[2025-06-03 21:03:41] ID_LIKE="rhel fedora"
[2025-06-03 21:03:41] VERSION_ID="7"
[2025-06-03 21:03:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 21:03:41] ANSI_COLOR="0;31"
[2025-06-03 21:03:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 21:03:41] HOME_URL="https://www.centos.org/"
[2025-06-03 21:03:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 21:03:41] 
[2025-06-03 21:03:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 21:03:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 21:03:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 21:03:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 21:03:41] 
[2025-06-03 21:03:41] 2025-06-04 01:03:29,803 | INFO     | **************************************
[2025-06-03 21:03:41] 2025-06-04 01:03:30,306 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-03 21:03:41] 2025-06-04 01:03:30,321 | INFO     | sufficient remaining disk space (171856363520 B)
[2025-06-03 21:03:41] 2025-06-04 01:03:30,321 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 21:03:41] 2025-06-04 01:03:30,322 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 21:03:41] 2025-06-04 01:03:30,322 | INFO     | update_server=False
[2025-06-03 21:03:41] 2025-06-04 01:03:30,322 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 21:03:41] 2025-06-04 01:03:30,322 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:03:41] 2025-06-04 01:03:30,322 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 21:03:41] 2025-06-04 01:03:30,322 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 21:03:41] 2025-06-04 01:03:30,322 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 21:03:41] 2025-06-04 01:03:30,322 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 21:03:41] 2025-06-04 01:03:30,322 | INFO     | aborting loop
[2025-06-03 21:03:41] 2025-06-04 01:03:31,116 | INFO     | all data control threads have been joined
[2025-06-03 21:03:41] 2025-06-04 01:03:31,224 | INFO     | all payload control threads have been joined
[2025-06-03 21:03:41] 2025-06-04 01:03:31,327 | INFO     | [job] retrieve thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:31,327 | INFO     | [job] job monitor thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:31,404 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:31,410 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:31,656 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:31,659 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 21:03:41] 2025-06-04 01:03:31,700 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 21:03:41] 2025-06-04 01:03:31,927 | INFO     | all job control threads have been joined
[2025-06-03 21:03:41] 2025-06-04 01:03:31,985 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:32,122 | INFO     | [data] control thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:32,158 | INFO     | [payload] validate_post thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:32,230 | INFO     | [payload] control thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:32,291 | INFO     | [job] validate thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:32,360 | INFO     | [payload] failed_post thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:32,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:03:41] 2025-06-04 01:03:32,823 | INFO     | [data] copytool_in thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:32,933 | INFO     | [job] control thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:33,664 | INFO     | [data] copytool_out thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:33,724 | INFO     | [job] queue monitor thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:35,706 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 21:03:41] 2025-06-04 01:03:35,830 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140172263847744)>', '<ExcThread(monitor, started 140171517339392)>']
[2025-06-03 21:03:41] 2025-06-04 01:03:36,353 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 21:03:41] 2025-06-04 01:03:36,354 | INFO     | [monitor] control thread has ended
[2025-06-03 21:03:41] 2025-06-04 01:03:40,855 | INFO     | all workflow threads have been joined
[2025-06-03 21:03:41] 2025-06-04 01:03:40,855 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 21:03:41] 2025-06-04 01:03:40,855 | INFO     | traces error code: 0
[2025-06-03 21:03:41] 2025-06-04 01:03:40,855 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 21:03:41] 2025-06-04 01:03:40,961 [wrapper] ==== pilot stdout END ====
[2025-06-03 21:03:41] 2025-06-04 01:03:40,964 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 21:03:41] 2025-06-04 01:03:40,966 [wrapper] pilotpid: 3810862
[2025-06-03 21:03:41] 2025-06-04 01:03:40,968 [wrapper] Pilot exit status: 0
[2025-06-03 21:03:41] 2025-06-04 01:03:40,984 [wrapper] pandaids: 6678016510
[2025-06-03 21:03:41] 2025-06-04 01:03:41,079 [wrapper] cleanup supervisor_pilot  583493 3810863
[2025-06-03 21:03:41] 2025-06-04 01:03:41,082 [wrapper] Test setup, not cleaning
[2025-06-03 21:03:41] 2025-06-04 01:03:41,084 [wrapper] apfmon messages muted
[2025-06-03 21:03:41] 2025-06-04 01:03:41,086 [wrapper] ==== wrapper stdout END ====
[2025-06-03 21:03:41] 2025-06-04 01:03:41,087 [wrapper] ==== wrapper stderr END ====
[2025-06-03 21:03:41]  *** Error codes and diagnostics ***
[2025-06-03 21:03:41]     "exeErrorCode": 0,
[2025-06-03 21:03:41]     "exeErrorDiag": "",
[2025-06-03 21:03:41]     "pilotErrorCode": 0,
[2025-06-03 21:03:41]     "pilotErrorDiag": "",
[2025-06-03 21:03:41]  *** Listing of results directory ***
[2025-06-03 21:03:41] total 395820
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 16:06 queuedata.json
[2025-06-03 21:03:41] -rwx------. 1 boincer umatlas     37140 Jun  3 16:09 runpilot2-wrapper.sh
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 16:09 pilot3.tar.gz
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas       100 Jun  3 20:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 21:03:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 20:10 run_atlas
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas       105 Jun  3 20:10 job.xml
[2025-06-03 21:03:41] -rw-r--r--. 2 boincer umatlas 217326867 Jun  3 20:10 EVNT.45006593._001790.pool.root.1
[2025-06-03 21:03:41] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 20:10 start_atlas.sh
[2025-06-03 21:03:41] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 20:10 shared
[2025-06-03 21:03:41] -rw-r--r--. 2 boincer umatlas    508879 Jun  3 20:10 input.tar.gz
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas         0 Jun  3 20:10 boinc_lockfile
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas      2525 Jun  3 20:10 pandaJob.out
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas    986077 Jun  3 20:10 agis_schedconf.cvmfs.json
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas   1603667 Jun  3 20:10 agis_ddmendpoints.agis.ALL.json
[2025-06-03 21:03:41] drwx------. 4 boincer umatlas      4096 Jun  3 20:10 pilot3
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas      7160 Jun  3 20:54 init_data.xml
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas 182900571 Jun  3 21:02 HITS.45006595._044636.pool.root.1
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas       529 Jun  3 21:03 boinc_task_state.xml
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas      1042 Jun  3 21:03 memory_monitor_summary.json
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas    298687 Jun  3 21:03 log.45006595._044636.job.log.tgz.1
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas        95 Jun  3 21:03 pilot_heartbeat.json
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas      7708 Jun  3 21:03 heartbeat.json
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas        27 Jun  3 21:03 wrapper_checkpoint.txt
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 21:03 boinc_mmap_file
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas      4477 Jun  3 21:03 pilotlog.txt
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas    328866 Jun  3 21:03 log.45006595._044636.job.log.1
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas       357 Jun  3 21:03 output.list
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas       620 Jun  3 21:03 runtime_log
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas    645120 Jun  3 21:03 result.tar.gz
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas      8649 Jun  3 21:03 runtime_log.err
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas       655 Jun  3 21:03 LCXLDmW8mg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmx1lKDmd2nKAn.diag
[2025-06-03 21:03:41] -rw-r--r--. 1 boincer umatlas     22374 Jun  3 21:03 stderr.txt
[2025-06-03 21:03:41] HITS file was successfully produced:
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas 182900571 Jun  3 21:02 shared/HITS.pool.root.1
[2025-06-03 21:03:41]  *** Contents of shared directory: ***
[2025-06-03 21:03:41] total 392008
[2025-06-03 21:03:41] -rw-r--r--. 2 boincer umatlas 217326867 Jun  3 20:10 ATLAS.root_0
[2025-06-03 21:03:41] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 20:10 start_atlas.sh
[2025-06-03 21:03:41] -rw-r--r--. 2 boincer umatlas    508879 Jun  3 20:10 input.tar.gz
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas 182900571 Jun  3 21:02 HITS.pool.root.1
[2025-06-03 21:03:41] -rw-------. 1 boincer umatlas    645120 Jun  3 21:03 result.tar.gz
21:03:42 (3803342): run_atlas exited; CPU time 19966.310667
21:03:42 (3803342): called boinc_finish(0)

</stderr_txt>
]]>

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