Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:29:05 (32278): wrapper (7.7.26015): starting
08:29:05 (32278): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:29:05] Arguments: --nthreads 8
[2025-06-04 08:29:05] Threads: 8
[2025-06-04 08:29:05] Checking for CVMFS
[2025-06-04 08:29:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:29:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:29:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:29:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:29:07] 2.11.2.0 27863 33030 92608 146770 2 16 20386231 25165824 4298 130560 0 16111492 99.764 19407425 4724 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 08:29:07] CVMFS is ok
[2025-06-04 08:29:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:29:07] Checking for apptainer binary...
[2025-06-04 08:29:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:29:07] Running /usr/bin/apptainer --version
[2025-06-04 08:29:08] apptainer version 1.3.2-1.el7
[2025-06-04 08:29:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:59:42] cg-vwn495.simple-grid.lan
[2025-06-04 08:59:42] apptainer works
[2025-06-04 08:59:42] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:59:42] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:59:42] Starting ATLAS job with PandaID=6677920737
[2025-06-04 08:59:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:04:44]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:04:45] 2025-06-04 10:38:17,930 | INFO     | extracted standard info from prmon json
[2025-06-04 13:04:45] 2025-06-04 10:38:17,930 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 13:04:45] 2025-06-04 10:38:17,930 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 13:04:45] 2025-06-04 10:38:17,931 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 13:04:45] 2025-06-04 10:38:17,931 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 13:04:45] 2025-06-04 10:38:17,935 | INFO     | fitting pss+swap vs Time
[2025-06-04 13:04:45] 2025-06-04 10:38:17,936 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 13:04:45] 2025-06-04 10:38:17,937 | INFO     | sum of deviations: 77478630768.0
[2025-06-04 13:04:45] 2025-06-04 10:38:17,937 | INFO     | mean x: 1749027225.0
[2025-06-04 13:04:45] 2025-06-04 10:38:17,937 | INFO     | mean y: 2415546.369458128
[2025-06-04 13:04:45] 2025-06-04 10:38:17,937 | INFO     | -- intersect: -52239910825.65406
[2025-06-04 13:04:45] 2025-06-04 10:38:17,937 | INFO     | intersect: -52239910825.65406
[2025-06-04 13:04:45] 2025-06-04 10:38:17,938 | INFO     | chi2: 6.31501399848624
[2025-06-04 13:04:45] 2025-06-04 10:38:17,938 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 13:04:45] 2025-06-04 10:38:17,940 | INFO     | sum of deviations: 88680778128.0
[2025-06-04 13:04:45] 2025-06-04 10:38:17,940 | INFO     | mean x: 1749027072.5
[2025-06-04 13:04:45] 2025-06-04 10:38:17,940 | INFO     | mean y: 2424465.777777778
[2025-06-04 13:04:45] 2025-06-04 10:38:17,940 | INFO     | -- intersect: -64438700019.04028
[2025-06-04 13:04:45] 2025-06-04 10:38:17,940 | INFO     | intersect: -64438700019.04028
[2025-06-04 13:04:45] 2025-06-04 10:38:17,940 | INFO     | chi2: 5.595745712641681
[2025-06-04 13:04:45] 2025-06-04 10:38:17,941 | INFO     | current chi2=5.595745712641681 (change=11.389813007809224 %)
[2025-06-04 13:04:45] 2025-06-04 10:38:17,941 | INFO     | right removable region: 197
[2025-06-04 13:04:45] 2025-06-04 10:38:17,941 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 13:04:45] 2025-06-04 10:38:17,942 | INFO     | sum of deviations: 9354954418.500004
[2025-06-04 13:04:45] 2025-06-04 10:38:17,943 | INFO     | mean x: 1749027377.5
[2025-06-04 13:04:45] 2025-06-04 10:38:17,943 | INFO     | mean y: 2471035.8232323234
[2025-06-04 13:04:45] 2025-06-04 10:38:17,943 | INFO     | -- intersect: -6795438275.343723
[2025-06-04 13:04:45] 2025-06-04 10:38:17,943 | INFO     | intersect: -6795438275.343723
[2025-06-04 13:04:45] 2025-06-04 10:38:17,943 | INFO     | chi2: 1.7141920543972966
[2025-06-04 13:04:45] 2025-06-04 10:38:17,943 | INFO     | current chi2=1.7141920543972966 (change=72.85529288124773 %)
[2025-06-04 13:04:45] 2025-06-04 10:38:17,944 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 13:04:45] 2025-06-04 10:38:17,945 | INFO     | sum of deviations: -16437959444.999998
[2025-06-04 13:04:45] 2025-06-04 10:38:17,945 | INFO     | mean x: 1749027530.0
[2025-06-04 13:04:45] 2025-06-04 10:38:17,945 | INFO     | mean y: 2492991.082901554
[2025-06-04 13:04:45] 2025-06-04 10:38:17,951 | INFO     | -- intersect: 12900002550.259285
[2025-06-04 13:04:45] 2025-06-04 10:38:17,952 | INFO     | intersect: 12900002550.259285
[2025-06-04 13:04:45] 2025-06-04 10:38:17,952 | INFO     | chi2: 0.8759706039409901
[2025-06-04 13:04:45] 2025-06-04 10:38:17,952 | INFO     | current chi2=0.8759706039409901 (change=48.898922866085854 %)
[2025-06-04 13:04:45] 2025-06-04 10:38:17,953 | INFO     | sum of square deviations: 2060343747.0
[2025-06-04 13:04:45] 2025-06-04 10:38:17,954 | INFO     | sum of deviations: -23732250812.000008
[2025-06-04 13:04:45] 2025-06-04 10:38:17,954 | INFO     | mean x: 1749027682.5
[2025-06-04 13:04:45] 2025-06-04 10:38:17,954 | INFO     | mean y: 2499551.7978723403
[2025-06-04 13:04:45] 2025-06-04 10:38:17,954 | INFO     | -- intersect: 20148828871.19426
[2025-06-04 13:04:45] 2025-06-04 10:38:17,954 | INFO     | intersect: 20148828871.19426
[2025-06-04 13:04:45] 2025-06-04 10:38:17,955 | INFO     | chi2: 0.8041638618661431
[2025-06-04 13:04:45] 2025-06-04 10:38:17,955 | INFO     | current chi2=0.8041638618661431 (change=8.197391756274543 %)
[2025-06-04 13:04:45] 2025-06-04 10:38:17,955 | INFO     | left removable region: 30
[2025-06-04 13:04:45] 2025-06-04 10:38:17,955 | INFO     | sum of square deviations: 1444149868.0
[2025-06-04 13:04:45] 2025-06-04 10:38:17,956 | INFO     | sum of deviations: -9864429438.000004
[2025-06-04 13:04:45] 2025-06-04 10:38:17,956 | INFO     | mean x: 1749027957.0
[2025-06-04 13:04:45] 2025-06-04 10:38:17,957 | INFO     | mean y: 2510420.8143712576
[2025-06-04 13:04:45] 2025-06-04 10:38:17,957 | INFO     | -- intersect: 11949444218.488482
[2025-06-04 13:04:45] 2025-06-04 10:38:17,957 | INFO     | intersect: 11949444218.488482
[2025-06-04 13:04:45] 2025-06-04 10:38:17,957 | INFO     | chi2: 0.011095125331246193
[2025-06-04 13:04:45] 2025-06-04 10:38:17,957 | INFO     | -- intersect: 11949444218.488482
[2025-06-04 13:04:45] 2025-06-04 10:38:17,957 | INFO     | current memory leak: -6.83 B/s (using 167 data points, chi2=0.01)
[2025-06-04 13:04:45] 2025-06-04 10:38:17,958 | INFO     | ..............................
[2025-06-04 13:04:45] 2025-06-04 10:38:17,958 | INFO     | . Timing measurements:
[2025-06-04 13:04:45] 2025-06-04 10:38:17,958 | INFO     | . get job = 0 s
[2025-06-04 13:04:45] 2025-06-04 10:38:17,959 | INFO     | . initial setup = 7 s
[2025-06-04 13:04:45] 2025-06-04 10:38:17,959 | INFO     | . payload setup = 163 s
[2025-06-04 13:04:45] 2025-06-04 10:38:17,959 | INFO     | . stage-in = 0 s
[2025-06-04 13:04:45] 2025-06-04 10:38:17,959 | INFO     | . payload execution = 12490 s
[2025-06-04 13:04:45] 2025-06-04 10:38:17,959 | INFO     | . stage-out = 4 s
[2025-06-04 13:04:45] 2025-06-04 10:38:17,959 | INFO     | . log creation = 1 s
[2025-06-04 13:04:45] 2025-06-04 10:38:17,959 | INFO     | ..............................
[2025-06-04 13:04:45] 2025-06-04 10:38:18,197 | INFO     | 
[2025-06-04 13:04:45] 2025-06-04 10:38:18,198 | INFO     | job summary report
[2025-06-04 13:04:45] 2025-06-04 10:38:18,198 | INFO     | --------------------------------------------------
[2025-06-04 13:04:45] 2025-06-04 10:38:18,198 | INFO     | PanDA job id: 6677920737
[2025-06-04 13:04:45] 2025-06-04 10:38:18,198 | INFO     | task id: 45006595
[2025-06-04 13:04:45] 2025-06-04 10:38:18,198 | INFO     | errors: (none)
[2025-06-04 13:04:45] 2025-06-04 10:38:18,198 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:04:45] 2025-06-04 10:38:18,198 | INFO     | pilot state: finished 
[2025-06-04 13:04:45] 2025-06-04 10:38:18,205 | INFO     | transexitcode: 0
[2025-06-04 13:04:45] 2025-06-04 10:38:18,205 | INFO     | exeerrorcode: 0
[2025-06-04 13:04:45] 2025-06-04 10:38:18,205 | INFO     | exeerrordiag: 
[2025-06-04 13:04:45] 2025-06-04 10:38:18,205 | INFO     | exitcode: 0
[2025-06-04 13:04:45] 2025-06-04 10:38:18,205 | INFO     | exitmsg: OK
[2025-06-04 13:04:45] 2025-06-04 10:38:18,205 | INFO     | cpuconsumptiontime: 45783 s
[2025-06-04 13:04:45] 2025-06-04 10:38:18,205 | INFO     | nevents: 400
[2025-06-04 13:04:45] 2025-06-04 10:38:18,205 | INFO     | neventsw: 0
[2025-06-04 13:04:45] 2025-06-04 10:38:18,205 | INFO     | pid: 29551
[2025-06-04 13:04:45] 2025-06-04 10:38:18,205 | INFO     | pgrp: 29551
[2025-06-04 13:04:45] 2025-06-04 10:38:18,205 | INFO     | corecount: 8
[2025-06-04 13:04:45] 2025-06-04 10:38:18,206 | INFO     | event service: False
[2025-06-04 13:04:45] 2025-06-04 10:38:18,206 | INFO     | sizes: {0: 2405008, 1: 2405207, 12: 2405207, 22: 2405235, 33: 2405263, 44: 2405319, 54: 2405475, 65: 2405503, 76: 2405531, 87: 2405587, 94: 2405821, 97: 2406129, 1
[2025-06-04 13:04:45] 2025-06-04 10:38:18,206 | INFO     | --------------------------------------------------
[2025-06-04 13:04:45] 2025-06-04 10:38:18,206 | INFO     | 
[2025-06-04 13:04:45] 2025-06-04 10:38:18,206 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-04 13:04:45] 2025-06-04 10:38:18,646 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,647 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,647 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,647 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,647 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,647 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,647 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,647 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,648 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,648 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,648 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,648 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,648 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,648 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,648 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,648 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,648 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,648 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:04:45] 2025-06-04 10:38:18,649 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,649 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:04:45] 2025-06-04 10:38:18,649 | INFO     | job 6677920737 has completed (purged errors)
[2025-06-04 13:04:45] 2025-06-04 10:38:18,649 | INFO     | overall cleanup function is called
[2025-06-04 13:04:45] 2025-06-04 10:38:19,662 | INFO     | --- collectZombieJob: --- 10, [29551]
[2025-06-04 13:04:45] 2025-06-04 10:38:19,663 | INFO     | zombie collector waiting for pid 29551
[2025-06-04 13:04:45] 2025-06-04 10:38:19,663 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:04:45] 2025-06-04 10:38:19,663 | INFO     | collected zombie processes
[2025-06-04 13:04:45] 2025-06-04 10:38:19,663 | INFO     | will attempt to kill all subprocesses of pid=29551
[2025-06-04 13:04:45] 2025-06-04 10:38:19,782 | INFO     | process IDs to be killed: [29551] (in reverse order)
[2025-06-04 13:04:45] 2025-06-04 10:38:20,387 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:04:45] 2025-06-04 10:38:20,388 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:04:45] 2025-06-04 10:38:20,391 | INFO     | did not find any defunct processes belonging to 29551
[2025-06-04 13:04:45] 2025-06-04 10:38:20,394 | INFO     | did not find any defunct processes belonging to 29551
[2025-06-04 13:04:45] 2025-06-04 10:38:20,394 | INFO     | ready for new job
[2025-06-04 13:04:45] 2025-06-04 10:38:20,395 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:04:45] 2025-06-04 10:38:20,396 | INFO     | **************************************
[2025-06-04 13:04:45] 2025-06-04 10:38:20,397 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:04:45] 2025-06-04 10:38:20,397 | INFO     | **************************************
[2025-06-04 13:04:45] 2025-06-04 10:38:20,397 | INFO     | 
[2025-06-04 13:04:45] 2025-06-04 10:38:20,397 | INFO     | pilot is running in a VM
[2025-06-04 13:04:45] 2025-06-04 10:38:20,397 | INFO     | architecture information:
[2025-06-04 13:04:45] 2025-06-04 10:38:20,403 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:04:45] 2025-06-04 10:38:20,733 | INFO     | cat /etc/os-release:
[2025-06-04 13:04:45] NAME="CentOS Linux"
[2025-06-04 13:04:45] VERSION="7 (Core)"
[2025-06-04 13:04:45] ID="centos"
[2025-06-04 13:04:45] ID_LIKE="rhel fedora"
[2025-06-04 13:04:45] VERSION_ID="7"
[2025-06-04 13:04:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:04:45] ANSI_COLOR="0;31"
[2025-06-04 13:04:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:04:45] HOME_URL="https://www.centos.org/"
[2025-06-04 13:04:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:04:45] 
[2025-06-04 13:04:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:04:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:04:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:04:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:04:45] 
[2025-06-04 13:04:45] 2025-06-04 10:38:20,733 | INFO     | **************************************
[2025-06-04 13:04:45] 2025-06-04 10:38:21,236 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-04 13:04:45] 2025-06-04 10:38:21,475 | INFO     | sufficient remaining disk space (496514367488 B)
[2025-06-04 13:04:45] 2025-06-04 10:38:21,475 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:04:45] 2025-06-04 10:38:21,476 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:04:45] 2025-06-04 10:38:21,476 | INFO     | update_server=False
[2025-06-04 13:04:45] 2025-06-04 10:38:21,476 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:04:45] 2025-06-04 10:38:21,476 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 13:04:45] 2025-06-04 10:38:21,476 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:04:45] 2025-06-04 10:38:21,476 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:04:45] 2025-06-04 10:38:21,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:04:45] 2025-06-04 10:38:21,480 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:04:45] 2025-06-04 10:38:21,483 | INFO     | all data control threads have been joined
[2025-06-04 13:04:45] 2025-06-04 10:38:21,647 | INFO     | all payload control threads have been joined
[2025-06-04 13:04:45] 2025-06-04 10:38:22,334 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:04:45] 2025-06-04 10:38:22,335 | INFO     | aborting loop
[2025-06-04 13:04:45] 2025-06-04 10:38:22,482 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:22,490 | INFO     | [data] control thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:22,654 | INFO     | [payload] control thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:22,791 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:22,820 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:23,054 | INFO     | all job control threads have been joined
[2025-06-04 13:04:45] 2025-06-04 10:38:23,058 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:23,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:04:45] 2025-06-04 10:38:23,236 | INFO     | [job] validate thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:23,341 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:23,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:04:45] 2025-06-04 10:38:23,489 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:23,834 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:23,847 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:23,882 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:23,941 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:24,061 | INFO     | [job] control thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:24,117 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:27,354 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:04:45] 2025-06-04 10:38:28,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140046336681792)>', '<ExcThread(monitor, started 140045369460480)>']
[2025-06-04 13:04:45] 2025-06-04 10:38:29,523 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:04:45] 2025-06-04 10:38:29,524 | INFO     | [monitor] control thread has ended
[2025-06-04 13:04:45] 2025-06-04 10:38:33,671 | INFO     | all workflow threads have been joined
[2025-06-04 13:04:45] 2025-06-04 10:38:33,672 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:04:45] 2025-06-04 10:38:33,672 | INFO     | traces error code: 0
[2025-06-04 13:04:45] 2025-06-04 10:38:33,672 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:04:45] 2025-06-04 10:38:34,087 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:04:45] 2025-06-04 10:38:34,211 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:04:45] 2025-06-04 10:38:34,309 [wrapper] pilotpid: 20930
[2025-06-04 13:04:45] 2025-06-04 10:38:34,377 [wrapper] Pilot exit status: 0
[2025-06-04 13:04:45] 2025-06-04 10:38:34,652 [wrapper] pandaids: 6677920737
[2025-06-04 13:04:45] 2025-06-04 10:38:35,588 [wrapper] cleanup supervisor_pilot 26753 20931
[2025-06-04 13:04:45] 2025-06-04 10:38:35,714 [wrapper] Test setup, not cleaning
[2025-06-04 13:04:45] 2025-06-04 10:38:35,814 [wrapper] apfmon messages muted
[2025-06-04 13:04:45] 2025-06-04 10:38:35,864 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:04:45] 2025-06-04 10:38:35,920 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:04:45]  *** Error codes and diagnostics ***
[2025-06-04 13:04:45]     "exeErrorCode": 0,
[2025-06-04 13:04:45]     "exeErrorDiag": "",
[2025-06-04 13:04:45]     "pilotErrorCode": 0,
[2025-06-04 13:04:45]     "pilotErrorDiag": "",
[2025-06-04 13:04:45]  *** Listing of results directory ***
[2025-06-04 13:04:45] total 394220
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc    495897 Jun  3 19:46 pilot3.tar.gz
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc      5111 Jun  3 20:26 queuedata.json
[2025-06-04 13:04:45] -rwx------. 1 boinc boinc     37140 Jun  3 20:27 runpilot2-wrapper.sh
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc       100 Jun  4 08:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:04:45] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 08:29 run_atlas
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc       105 Jun  4 08:29 job.xml
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc      6392 Jun  4 08:29 init_data.xml
[2025-06-04 13:04:45] -rw-r--r--. 2 boinc boinc 216585673 Jun  4 08:29 EVNT.45006593._001695.pool.root.1
[2025-06-04 13:04:45] -rw-r--r--. 2 boinc boinc     15093 Jun  4 08:29 start_atlas.sh
[2025-06-04 13:04:45] drwxrwx--x. 2 boinc boinc        68 Jun  4 08:29 shared
[2025-06-04 13:04:45] -rw-r--r--. 2 boinc boinc    508877 Jun  4 08:29 input.tar.gz
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc         0 Jun  4 08:29 boinc_lockfile
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc      2522 Jun  4 08:59 pandaJob.out
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc    986745 Jun  4 09:02 agis_schedconf.cvmfs.json
[2025-06-04 13:04:45] drwx------. 4 boinc boinc      4096 Jun  4 09:02 pilot3
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc 180338030 Jun  4 12:35 HITS.45006595._042247.pool.root.1
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc       531 Jun  4 12:35 boinc_task_state.xml
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc      1018 Jun  4 12:36 memory_monitor_summary.json
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc   1603667 Jun  4 12:36 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc    358134 Jun  4 12:36 log.45006595._042247.job.log.tgz.1
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc        95 Jun  4 12:37 pilot_heartbeat.json
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc      7692 Jun  4 12:38 heartbeat.json
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc      4540 Jun  4 12:38 pilotlog.txt
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc   1110350 Jun  4 12:38 log.45006595._042247.job.log.1
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc       357 Jun  4 12:38 output.list
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc       620 Jun  4 12:38 runtime_log
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc   1484800 Jun  4 12:38 result.tar.gz
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc      8673 Jun  4 12:38 runtime_log.err
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc       657 Jun  4 12:38 aqkLDmOXlg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpelKDmUj8dfn.diag
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc      8192 Jun  4 13:04 boinc_mmap_file
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc        28 Jun  4 13:04 wrapper_checkpoint.txt
[2025-06-04 13:04:45] -rw-r--r--. 1 boinc boinc     20517 Jun  4 13:04 stderr.txt
[2025-06-04 13:04:45] HITS file was successfully produced:
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc 180338030 Jun  4 12:35 shared/HITS.pool.root.1
[2025-06-04 13:04:45]  *** Contents of shared directory: ***
[2025-06-04 13:04:45] total 389592
[2025-06-04 13:04:45] -rw-r--r--. 2 boinc boinc 216585673 Jun  4 08:29 ATLAS.root_0
[2025-06-04 13:04:45] -rw-r--r--. 2 boinc boinc     15093 Jun  4 08:29 start_atlas.sh
[2025-06-04 13:04:45] -rw-r--r--. 2 boinc boinc    508877 Jun  4 08:29 input.tar.gz
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc 180338030 Jun  4 12:35 HITS.pool.root.1
[2025-06-04 13:04:45] -rw-------. 1 boinc boinc   1484800 Jun  4 12:38 result.tar.gz
13:04:46 (32278): run_atlas exited; CPU time 45954.375844
13:04:46 (32278): called boinc_finish(0)

</stderr_txt>
]]>

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