Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
10:42:46 (2892415): wrapper (7.7.26015): starting
10:42:46 (2892415): wrapper: running run_atlas (--nthreads 3)
[2025-06-04 10:42:46] Arguments: --nthreads 3
[2025-06-04 10:42:46] Threads: 3
[2025-06-04 10:42:46] Checking for CVMFS
[2025-06-04 10:42:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:42:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:42:46] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:42:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:42:47] 2.9.2.0 2190426 2398 66968 146773 0 56 32069600 36864000 0 130560 0 1878313 99.992 529670 30787 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 10:42:47] CVMFS is ok
[2025-06-04 10:42:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 10:42:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 10:42:47] Further information can be found at the LHC@home message board.
[2025-06-04 10:42:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:42:47] Checking for apptainer binary...
[2025-06-04 10:42:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:42:47] Running /usr/bin/apptainer --version
[2025-06-04 10:42:47] apptainer version 1.3.6-6.1
[2025-06-04 10:42:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:42:47] thA312
[2025-06-04 10:42:47] apptainer works
[2025-06-04 10:42:47] Set ATHENA_PROC_NUMBER=3
[2025-06-04 10:42:47] Set ATHENA_CORE_NUMBER=3
[2025-06-04 10:42:47] Starting ATLAS job with PandaID=6677978571
[2025-06-04 10:42:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:05:01]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:05:01]  is_tar=False
[2025-06-04 12:05:01]  lfn=log.45006595._044012.job.log.tgz.1
[2025-06-04 12:05:01]  mtime=0
[2025-06-04 12:05:01]  protocol_id=None
[2025-06-04 12:05:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 12:05:01]  replicas=None
[2025-06-04 12:05:01]  scope=mc23_13p6TeV
[2025-06-04 12:05:01]  status=None
[2025-06-04 12:05:01]  status_code=0
[2025-06-04 12:05:01]  storage_token=
[2025-06-04 12:05:01]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6677978571/log.45006595._044012.job.log.tgz.1
[2025-06-04 12:05:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/a8/log.45006595._044012.job.log.tgz.1
[2025-06-04 12:05:01]  workdir=None
[2025-06-04 12:05:01] ]
[2025-06-04 12:05:01] 2025-06-04 10:04:32,403 | INFO     | transferring file log.45006595._044012.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6677978571/log.45006595._044012.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 12:05:01] 2025-06-04 10:04:32,403 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6677978571/log.45006595._044012.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0440
[2025-06-04 12:05:01] 2025-06-04 10:04:32,416 | INFO     | adding to output.list: log.45006595._044012.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/a8/log.45006595._044012.job.log.tg
[2025-06-04 12:05:01] 2025-06-04 10:04:32,416 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 12:05:01] 2025-06-04 10:04:32,416 | INFO     | summary of transferred files:
[2025-06-04 12:05:01] 2025-06-04 10:04:32,416 | INFO     |  -- lfn=log.45006595._044012.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 12:05:01] 2025-06-04 10:04:32,416 | INFO     | stage-out finished correctly
[2025-06-04 12:05:01] 2025-06-04 10:04:34,343 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 12:05:01] 2025-06-04 10:04:34,501 | INFO     | job 6677978571 has state=finished
[2025-06-04 12:05:01] 2025-06-04 10:04:34,501 | INFO     | preparing for final server update for job 6677978571 in state='finished'
[2025-06-04 12:05:01] 2025-06-04 10:04:34,502 | INFO     | this job has now completed (state=finished)
[2025-06-04 12:05:01] 2025-06-04 10:04:34,502 | INFO     | monitor loop #378: job 0:6677978571 is in state 'finished'
[2025-06-04 12:05:01] 2025-06-04 10:04:34,503 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 12:05:01] 2025-06-04 10:04:34,503 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 12:05:01] 2025-06-04 10:04:34,503 | INFO     | log transfer has been attempted: DONE
[2025-06-04 12:05:01] 2025-06-04 10:04:34,504 | INFO     | job 6677978571 has finished - writing final server update
[2025-06-04 12:05:01] 2025-06-04 10:04:34,504 | INFO     | total number of processed events: 400 (read)
[2025-06-04 12:05:01] 2025-06-04 10:04:34,507 | INFO     | executing command: lscpu
[2025-06-04 12:05:01] 2025-06-04 10:04:34,546 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 12:05:01] 2025-06-04 10:04:37,007 | INFO     | monitor loop #379: job 0:6677978571 is in state 'finished'
[2025-06-04 12:05:01] 2025-06-04 10:04:37,008 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 12:05:01] 2025-06-04 10:04:39,510 | INFO     | monitor loop #380: job 0:6677978571 is in state 'finished'
[2025-06-04 12:05:01] 2025-06-04 10:04:39,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 12:05:01] 2025-06-04 10:04:42,013 | INFO     | monitor loop #381: job 0:6677978571 is in state 'finished'
[2025-06-04 12:05:01] 2025-06-04 10:04:42,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 12:05:01] 2025-06-04 10:04:42,125 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 12:05:01] 2025-06-04 10:04:42,125 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6677978571/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 12:05:01] 2025-06-04 10:04:42,125 | INFO     | extracted standard info from prmon json
[2025-06-04 12:05:01] 2025-06-04 10:04:42,125 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 12:05:01] 2025-06-04 10:04:42,125 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 12:05:01] 2025-06-04 10:04:42,125 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 12:05:01] 2025-06-04 10:04:42,125 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 12:05:01] 2025-06-04 10:04:42,126 | INFO     | fitting pss+swap vs Time
[2025-06-04 12:05:01] 2025-06-04 10:04:42,126 | INFO     | sum of square deviations: 120605052.0
[2025-06-04 12:05:01] 2025-06-04 10:04:42,126 | INFO     | sum of deviations: -12818794309.0
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | mean x: 1749029107.0
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | mean y: 2473325.1369863013
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | -- intersect: 185902184749.22354
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | intersect: 185902184749.22354
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | chi2: 0.06966471053645165
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | -- intersect: 185902184749.22354
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | current memory leak: -106.29 B/s (using 73 data points, chi2=0.07)
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | ..............................
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | . Timing measurements:
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | . get job = 0 s
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | . initial setup = 1 s
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | . payload setup = 7 s
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | . stage-in = 0 s
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | . payload execution = 4865 s
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | . stage-out = 0 s
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | . log creation = 0 s
[2025-06-04 12:05:01] 2025-06-04 10:04:42,127 | INFO     | ..............................
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | 
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | job summary report
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | --------------------------------------------------
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | PanDA job id: 6677978571
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | task id: 45006595
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | errors: (none)
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | pilot state: finished 
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | transexitcode: 0
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | exeerrorcode: 0
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | exeerrordiag: 
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | exitcode: 0
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | exitmsg: OK
[2025-06-04 12:05:01] 2025-06-04 10:04:42,160 | INFO     | cpuconsumptiontime: 13979 s
[2025-06-04 12:05:01] 2025-06-04 10:04:42,161 | INFO     | nevents: 400
[2025-06-04 12:05:01] 2025-06-04 10:04:42,161 | INFO     | neventsw: 0
[2025-06-04 12:05:01] 2025-06-04 10:04:42,161 | INFO     | pid: 2902563
[2025-06-04 12:05:01] 2025-06-04 10:04:42,161 | INFO     | pgrp: 2902563
[2025-06-04 12:05:01] 2025-06-04 10:04:42,161 | INFO     | corecount: 3
[2025-06-04 12:05:01] 2025-06-04 10:04:42,161 | INFO     | event service: False
[2025-06-04 12:05:01] 2025-06-04 10:04:42,161 | INFO     | sizes: {0: 2405187, 4: 2405393, 11: 2405421, 4877: 2440591, 4879: 2440591, 4887: 2440761}
[2025-06-04 12:05:01] 2025-06-04 10:04:42,161 | INFO     | --------------------------------------------------
[2025-06-04 12:05:01] 2025-06-04 10:04:42,161 | INFO     | 
[2025-06-04 12:05:01] 2025-06-04 10:04:42,161 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 12:05:01] 2025-06-04 10:04:42,172 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | job 6677978571 has completed (purged errors)
[2025-06-04 12:05:01] 2025-06-04 10:04:42,173 | INFO     | overall cleanup function is called
[2025-06-04 12:05:01] 2025-06-04 10:04:43,180 | INFO     | --- collectZombieJob: --- 10, [2902563]
[2025-06-04 12:05:01] 2025-06-04 10:04:43,180 | INFO     | zombie collector waiting for pid 2902563
[2025-06-04 12:05:01] 2025-06-04 10:04:43,180 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:05:01] 2025-06-04 10:04:43,181 | INFO     | collected zombie processes
[2025-06-04 12:05:01] 2025-06-04 10:04:43,181 | INFO     | will attempt to kill all subprocesses of pid=2902563
[2025-06-04 12:05:01] 2025-06-04 10:04:43,227 | INFO     | process IDs to be killed: [2902563] (in reverse order)
[2025-06-04 12:05:01] 2025-06-04 10:04:43,255 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:05:01] 2025-06-04 10:04:43,256 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:05:01] 2025-06-04 10:04:43,257 | INFO     | did not find any defunct processes belonging to 2902563
[2025-06-04 12:05:01] 2025-06-04 10:04:43,258 | INFO     | did not find any defunct processes belonging to 2902563
[2025-06-04 12:05:01] 2025-06-04 10:04:43,258 | INFO     | ready for new job
[2025-06-04 12:05:01] 2025-06-04 10:04:43,258 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:05:01] 2025-06-04 10:04:43,259 | INFO     | **************************************
[2025-06-04 12:05:01] 2025-06-04 10:04:43,259 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:05:01] 2025-06-04 10:04:43,259 | INFO     | **************************************
[2025-06-04 12:05:01] 2025-06-04 10:04:43,259 | INFO     | 
[2025-06-04 12:05:01] 2025-06-04 10:04:43,259 | INFO     | architecture information:
[2025-06-04 12:05:01] 2025-06-04 10:04:43,259 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:05:01] 2025-06-04 10:04:43,268 | INFO     | cat /etc/os-release:
[2025-06-04 12:05:01] NAME="CentOS Linux"
[2025-06-04 12:05:01] VERSION="7 (Core)"
[2025-06-04 12:05:01] ID="centos"
[2025-06-04 12:05:01] ID_LIKE="rhel fedora"
[2025-06-04 12:05:01] VERSION_ID="7"
[2025-06-04 12:05:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:05:01] ANSI_COLOR="0;31"
[2025-06-04 12:05:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:05:01] HOME_URL="https://www.centos.org/"
[2025-06-04 12:05:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:05:01] 
[2025-06-04 12:05:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:05:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:05:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:05:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:05:01] 
[2025-06-04 12:05:01] 2025-06-04 10:04:43,268 | INFO     | **************************************
[2025-06-04 12:05:01] 2025-06-04 10:04:43,772 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 12:05:01] 2025-06-04 10:04:43,785 | INFO     | sufficient remaining disk space (824809881600 B)
[2025-06-04 12:05:01] 2025-06-04 10:04:43,785 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:05:01] 2025-06-04 10:04:43,785 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:05:01] 2025-06-04 10:04:43,785 | INFO     | update_server=False
[2025-06-04 12:05:01] 2025-06-04 10:04:43,785 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:05:01] 2025-06-04 10:04:43,785 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:05:01] 2025-06-04 10:04:43,786 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 12:05:01] 2025-06-04 10:04:43,786 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:05:01] 2025-06-04 10:04:43,786 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:05:01] 2025-06-04 10:04:43,786 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:05:01] 2025-06-04 10:04:43,786 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:05:01] 2025-06-04 10:04:43,786 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:05:01] 2025-06-04 10:04:43,786 | INFO     | aborting loop
[2025-06-04 12:05:01] 2025-06-04 10:04:44,019 | INFO     | all data control threads have been joined
[2025-06-04 12:05:01] 2025-06-04 10:04:44,189 | INFO     | all job control threads have been joined
[2025-06-04 12:05:01] 2025-06-04 10:04:44,258 | INFO     | all payload control threads have been joined
[2025-06-04 12:05:01] 2025-06-04 10:04:44,789 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:44,791 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:44,791 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:44,828 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:44,927 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:05:01] 2025-06-04 10:04:45,025 | INFO     | [data] control thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:45,196 | INFO     | [job] control thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:45,264 | INFO     | [payload] control thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:45,370 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:45,514 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:45,791 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:45,949 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:46,127 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:46,131 | INFO     | [job] validate thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:46,195 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:48,935 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:54,040 | INFO     | job.realtimelogging is not enabled
[2025-06-04 12:05:01] 2025-06-04 10:04:55,046 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:05:01] 2025-06-04 10:04:56,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140129723053888)>', '<ExcThread(monitor, started 140129012283136)>']
[2025-06-04 12:05:01] 2025-06-04 10:04:56,848 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:05:01] 2025-06-04 10:04:56,849 | INFO     | [monitor] control thread has ended
[2025-06-04 12:05:01] 2025-06-04 10:05:01,514 | INFO     | all workflow threads have been joined
[2025-06-04 12:05:01] 2025-06-04 10:05:01,515 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:05:01] 2025-06-04 10:05:01,515 | INFO     | traces error code: 0
[2025-06-04 12:05:01] 2025-06-04 10:05:01,516 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:05:01] 2025-06-04 10:05:01,565 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:05:01] 2025-06-04 10:05:01,568 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:05:01] 2025-06-04 10:05:01,571 [wrapper] pilotpid: 2896061
[2025-06-04 12:05:01] 2025-06-04 10:05:01,574 [wrapper] Pilot exit status: 0
[2025-06-04 12:05:01] 2025-06-04 10:05:01,581 [wrapper] pandaids: 6677978571
[2025-06-04 12:05:01] 2025-06-04 10:05:01,599 [wrapper] cleanup supervisor_pilot 2915034 2896062
[2025-06-04 12:05:01] 2025-06-04 10:05:01,601 [wrapper] Test setup, not cleaning
[2025-06-04 12:05:01] 2025-06-04 10:05:01,604 [wrapper] apfmon messages muted
[2025-06-04 12:05:01] 2025-06-04 10:05:01,607 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:05:01] 2025-06-04 10:05:01,609 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:05:01]  *** Error codes and diagnostics ***
[2025-06-04 12:05:01]     "exeErrorCode": 0,
[2025-06-04 12:05:01]     "exeErrorDiag": "",
[2025-06-04 12:05:01]     "pilotErrorCode": 0,
[2025-06-04 12:05:01]     "pilotErrorDiag": "",
[2025-06-04 12:05:01]  *** Listing of results directory ***
[2025-06-04 12:05:01] total 387824
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc    495897 Jun  3 21:41 pilot3.tar.gz
[2025-06-04 12:05:01] -rwx------ 1 boinc boinc     37140 Jun  3 21:48 runpilot2-wrapper.sh
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc      5111 Jun  3 21:48 queuedata.json
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc       100 Jun  4 10:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:05:01] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 10:42 run_atlas
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc       105 Jun  4 10:42 job.xml
[2025-06-04 12:05:01] -rw-r--r-- 2 boinc boinc 216314044 Jun  4 10:42 EVNT.45006593._001764.pool.root.1
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc      6679 Jun  4 10:42 init_data.xml
[2025-06-04 12:05:01] drwxrwx--x 2 boinc boinc      4096 Jun  4 10:42 shared
[2025-06-04 12:05:01] -rw-r--r-- 2 boinc boinc    508879 Jun  4 10:42 input.tar.gz
[2025-06-04 12:05:01] -rw-r--r-- 2 boinc boinc     15093 Jun  4 10:42 start_atlas.sh
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc         0 Jun  4 10:42 boinc_lockfile
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc      2525 Jun  4 10:42 pandaJob.out
[2025-06-04 12:05:01] -rw------- 1 boinc boinc    986774 Jun  4 10:42 agis_schedconf.cvmfs.json
[2025-06-04 12:05:01] -rw------- 1 boinc boinc   1603667 Jun  4 10:42 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:05:01] drwx------ 4 boinc boinc      4096 Jun  4 10:42 pilot3
[2025-06-04 12:05:01] -rw------- 1 boinc boinc 175561391 Jun  4 12:04 HITS.45006595._044012.pool.root.1
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc       529 Jun  4 12:04 boinc_task_state.xml
[2025-06-04 12:05:01] -rw------- 1 boinc boinc        95 Jun  4 12:04 pilot_heartbeat.json
[2025-06-04 12:05:01] -rw------- 1 boinc boinc      1019 Jun  4 12:04 memory_monitor_summary.json
[2025-06-04 12:05:01] -rw------- 1 boinc boinc    233188 Jun  4 12:04 log.45006595._044012.job.log.tgz.1
[2025-06-04 12:05:01] -rw------- 1 boinc boinc      7657 Jun  4 12:04 heartbeat.json
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc      8192 Jun  4 12:04 boinc_mmap_file
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc        27 Jun  4 12:04 wrapper_checkpoint.txt
[2025-06-04 12:05:01] -rw------- 1 boinc boinc      4552 Jun  4 12:05 pilotlog.txt
[2025-06-04 12:05:01] -rw------- 1 boinc boinc    477021 Jun  4 12:05 log.45006595._044012.job.log.1
[2025-06-04 12:05:01] -rw------- 1 boinc boinc       357 Jun  4 12:05 output.list
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc       620 Jun  4 12:05 runtime_log
[2025-06-04 12:05:01] -rw------- 1 boinc boinc    727040 Jun  4 12:05 result.tar.gz
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc      8733 Jun  4 12:05 runtime_log.err
[2025-06-04 12:05:01] -rw------- 1 boinc boinc       658 Jun  4 12:05 PlQLDmynmg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmnmZKDmpBJ1zm.diag
[2025-06-04 12:05:01] -rw-r--r-- 1 boinc boinc     21472 Jun  4 12:05 stderr.txt
[2025-06-04 12:05:01] HITS file was successfully produced:
[2025-06-04 12:05:01] -rw------- 1 boinc boinc 175561391 Jun  4 12:04 shared/HITS.pool.root.1
[2025-06-04 12:05:01]  *** Contents of shared directory: ***
[2025-06-04 12:05:01] total 383932
[2025-06-04 12:05:01] -rw-r--r-- 2 boinc boinc 216314044 Jun  4 10:42 ATLAS.root_0
[2025-06-04 12:05:01] -rw-r--r-- 2 boinc boinc    508879 Jun  4 10:42 input.tar.gz
[2025-06-04 12:05:01] -rw-r--r-- 2 boinc boinc     15093 Jun  4 10:42 start_atlas.sh
[2025-06-04 12:05:01] -rw------- 1 boinc boinc 175561391 Jun  4 12:04 HITS.pool.root.1
[2025-06-04 12:05:01] -rw------- 1 boinc boinc    727040 Jun  4 12:05 result.tar.gz
12:05:03 (2892415): run_atlas exited; CPU time 14006.344375
12:05:03 (2892415): called boinc_finish(0)

</stderr_txt>
]]>

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