Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:56:44 (25957): wrapper (7.7.26015): starting
19:56:44 (25957): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 19:56:44] Arguments: --nthreads 12
[2025-06-03 19:56:44] Threads: 12
[2025-06-03 19:56:44] Checking for CVMFS
[2025-06-03 19:56:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 19:56:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 19:56:44] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 19:56:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 19:56:44] 2.11.2.0 2925 34930 85624 146761 2 56 13985019 20275201 1 130560 0 14937227 99.985 6028898 7262 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 19:56:44] CVMFS is ok
[2025-06-03 19:56:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 19:56:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 19:56:44] Further information can be found at the LHC@home message board.
[2025-06-03 19:56:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 19:56:44] Checking for apptainer binary...
[2025-06-03 19:56:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 19:56:44] Running /usr/bin/apptainer --version
[2025-06-03 19:56:44] apptainer version 1.3.2-1.el7
[2025-06-03 19:56:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 19:56:45] c-205-10.aglt2.org
[2025-06-03 19:56:45] apptainer works
[2025-06-03 19:56:45] Set ATHENA_PROC_NUMBER=12
[2025-06-03 19:56:45] Set ATHENA_CORE_NUMBER=12
[2025-06-03 19:56:45] Starting ATLAS job with PandaID=6678014811
[2025-06-03 19:56:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 21:03:30]  *** The last 200 lines of the pilot log: ***
[2025-06-03 21:03:30]  is_altstaged=None
[2025-06-03 21:03:30]  is_tar=False
[2025-06-03 21:03:30]  lfn=log.45006595._044406.job.log.tgz.1
[2025-06-03 21:03:30]  mtime=0
[2025-06-03 21:03:30]  protocol_id=None
[2025-06-03 21:03:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-03 21:03:30]  replicas=None
[2025-06-03 21:03:30]  scope=mc23_13p6TeV
[2025-06-03 21:03:30]  status=None
[2025-06-03 21:03:30]  status_code=0
[2025-06-03 21:03:30]  storage_token=
[2025-06-03 21:03:30]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678014811/log.45006595._044406.job.log.tgz.1
[2025-06-03 21:03:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/be/21/log.45006595._044406.job.log.tgz.1
[2025-06-03 21:03:30]  workdir=None
[2025-06-03 21:03:30] ]
[2025-06-03 21:03:30] 2025-06-04 01:03:08,632 | INFO     | transferring file log.45006595._044406.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678014811/log.45006595._044406.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-03 21:03:30] 2025-06-04 01:03:08,632 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678014811/log.45006595._044406.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._044406.job
[2025-06-03 21:03:30] 2025-06-04 01:03:08,656 | INFO     | adding to output.list: log.45006595._044406.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/be/21/log.45006595._044406.job.log.tg
[2025-06-03 21:03:30] 2025-06-04 01:03:08,657 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-03 21:03:30] 2025-06-04 01:03:08,657 | INFO     | summary of transferred files:
[2025-06-03 21:03:30] 2025-06-04 01:03:08,657 | INFO     |  -- lfn=log.45006595._044406.job.log.tgz.1, status_code=0, status=transferred
[2025-06-03 21:03:30] 2025-06-04 01:03:08,658 | INFO     | stage-out finished correctly
[2025-06-03 21:03:30] 2025-06-04 01:03:09,060 | WARNING  | process 4625 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 21:03:30] 2025-06-04 01:03:09,060 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678014811/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:03:30] 2025-06-04 01:03:09,147 | INFO     | number of running child processes to parent process 4625: 1
[2025-06-03 21:03:30] 2025-06-04 01:03:09,147 | INFO     | maximum number of monitored processes: 6
[2025-06-03 21:03:30] 2025-06-04 01:03:09,676 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-03 21:03:30] 2025-06-04 01:03:11,384 | INFO     | job 6678014811 has state=finished
[2025-06-03 21:03:30] 2025-06-04 01:03:11,384 | INFO     | preparing for final server update for job 6678014811 in state='finished'
[2025-06-03 21:03:30] 2025-06-04 01:03:11,385 | INFO     | this job has now completed (state=finished)
[2025-06-03 21:03:30] 2025-06-04 01:03:11,385 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-03 21:03:30] 2025-06-04 01:03:11,385 | INFO     | log transfer has been attempted: DONE
[2025-06-03 21:03:30] 2025-06-04 01:03:11,385 | INFO     | job 6678014811 has finished - writing final server update
[2025-06-03 21:03:30] 2025-06-04 01:03:11,386 | INFO     | total number of processed events: 400 (read)
[2025-06-03 21:03:30] 2025-06-04 01:03:11,387 | INFO     | executing command: lscpu
[2025-06-03 21:03:30] 2025-06-04 01:03:11,415 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 21:03:30] 2025-06-04 01:03:11,650 | INFO     | monitor loop #298: job 0:6678014811 is in state 'finished'
[2025-06-03 21:03:30] 2025-06-04 01:03:11,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 21:03:30] 2025-06-04 01:03:14,153 | INFO     | monitor loop #299: job 0:6678014811 is in state 'finished'
[2025-06-03 21:03:30] 2025-06-04 01:03:14,154 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 21:03:30] 2025-06-04 01:03:16,113 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-03 21:03:30] 2025-06-04 01:03:16,114 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678014811/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:03:30] 2025-06-04 01:03:16,115 | INFO     | extracted standard info from prmon json
[2025-06-03 21:03:30] 2025-06-04 01:03:16,115 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 21:03:30] 2025-06-04 01:03:16,115 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 21:03:30] 2025-06-04 01:03:16,116 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 21:03:30] 2025-06-04 01:03:16,116 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 21:03:30] 2025-06-04 01:03:16,117 | INFO     | fitting pss+swap vs Time
[2025-06-03 21:03:30] 2025-06-04 01:03:16,118 | INFO     | sum of square deviations: 60482994.5
[2025-06-03 21:03:30] 2025-06-04 01:03:16,118 | INFO     | sum of deviations: -3969482158.0
[2025-06-03 21:03:30] 2025-06-04 01:03:16,118 | INFO     | mean x: 1748997093.5
[2025-06-03 21:03:30] 2025-06-04 01:03:16,118 | INFO     | mean y: 2731910.103448276
[2025-06-03 21:03:30] 2025-06-04 01:03:16,118 | INFO     | -- intersect: 114788926185.62181
[2025-06-03 21:03:30] 2025-06-04 01:03:16,118 | INFO     | intersect: 114788926185.62181
[2025-06-03 21:03:30] 2025-06-04 01:03:16,119 | INFO     | chi2: 0.07676963056218604
[2025-06-03 21:03:30] 2025-06-04 01:03:16,119 | INFO     | -- intersect: 114788926185.62181
[2025-06-03 21:03:30] 2025-06-04 01:03:16,119 | INFO     | current memory leak: -65.63 B/s (using 58 data points, chi2=0.08)
[2025-06-03 21:03:30] 2025-06-04 01:03:16,119 | INFO     | ..............................
[2025-06-03 21:03:30] 2025-06-04 01:03:16,119 | INFO     | . Timing measurements:
[2025-06-03 21:03:30] 2025-06-04 01:03:16,119 | INFO     | . get job = 0 s
[2025-06-03 21:03:30] 2025-06-04 01:03:16,120 | INFO     | . initial setup = 2 s
[2025-06-03 21:03:30] 2025-06-04 01:03:16,120 | INFO     | . payload setup = 9 s
[2025-06-03 21:03:30] 2025-06-04 01:03:16,120 | INFO     | . stage-in = 0 s
[2025-06-03 21:03:30] 2025-06-04 01:03:16,120 | INFO     | . payload execution = 3939 s
[2025-06-03 21:03:30] 2025-06-04 01:03:16,120 | INFO     | . stage-out = 0 s
[2025-06-03 21:03:30] 2025-06-04 01:03:16,120 | INFO     | . log creation = 0 s
[2025-06-03 21:03:30] 2025-06-04 01:03:16,120 | INFO     | ..............................
[2025-06-03 21:03:30] 2025-06-04 01:03:16,204 | INFO     | 
[2025-06-03 21:03:30] 2025-06-04 01:03:16,204 | INFO     | job summary report
[2025-06-03 21:03:30] 2025-06-04 01:03:16,204 | INFO     | --------------------------------------------------
[2025-06-03 21:03:30] 2025-06-04 01:03:16,204 | INFO     | PanDA job id: 6678014811
[2025-06-03 21:03:30] 2025-06-04 01:03:16,204 | INFO     | task id: 45006595
[2025-06-03 21:03:30] 2025-06-04 01:03:16,205 | INFO     | errors: (none)
[2025-06-03 21:03:30] 2025-06-04 01:03:16,205 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 21:03:30] 2025-06-04 01:03:16,205 | INFO     | pilot state: finished 
[2025-06-03 21:03:30] 2025-06-04 01:03:16,205 | INFO     | transexitcode: 0
[2025-06-03 21:03:30] 2025-06-04 01:03:16,205 | INFO     | exeerrorcode: 0
[2025-06-03 21:03:30] 2025-06-04 01:03:16,205 | INFO     | exeerrordiag: 
[2025-06-03 21:03:30] 2025-06-04 01:03:16,205 | INFO     | exitcode: 0
[2025-06-03 21:03:30] 2025-06-04 01:03:16,205 | INFO     | exitmsg: OK
[2025-06-03 21:03:30] 2025-06-04 01:03:16,205 | INFO     | cpuconsumptiontime: 40904 s
[2025-06-03 21:03:30] 2025-06-04 01:03:16,206 | INFO     | nevents: 400
[2025-06-03 21:03:30] 2025-06-04 01:03:16,206 | INFO     | neventsw: 0
[2025-06-03 21:03:30] 2025-06-04 01:03:16,206 | INFO     | pid: 4625
[2025-06-03 21:03:30] 2025-06-04 01:03:16,206 | INFO     | pgrp: 4625
[2025-06-03 21:03:30] 2025-06-04 01:03:16,206 | INFO     | corecount: 12
[2025-06-03 21:03:30] 2025-06-04 01:03:16,206 | INFO     | event service: False
[2025-06-03 21:03:30] 2025-06-04 01:03:16,206 | INFO     | sizes: {0: 2405013, 1: 2405212, 6: 2405418, 12: 2405446, 3953: 2431125, 3954: 2440066, 3955: 2440250, 3961: 2440420}
[2025-06-03 21:03:30] 2025-06-04 01:03:16,206 | INFO     | --------------------------------------------------
[2025-06-03 21:03:30] 2025-06-04 01:03:16,206 | INFO     | 
[2025-06-03 21:03:30] 2025-06-04 01:03:16,207 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 21:03:30] 2025-06-04 01:03:16,229 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,230 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,230 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,230 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,230 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,231 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,231 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,231 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,231 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,231 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,231 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,232 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,232 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,232 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,232 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,232 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,232 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,233 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 21:03:30] 2025-06-04 01:03:16,233 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,233 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 21:03:30] 2025-06-04 01:03:16,233 | INFO     | job 6678014811 has completed (purged errors)
[2025-06-03 21:03:30] 2025-06-04 01:03:16,233 | INFO     | overall cleanup function is called
[2025-06-03 21:03:30] 2025-06-04 01:03:17,242 | INFO     | --- collectZombieJob: --- 10, [4625]
[2025-06-03 21:03:30] 2025-06-04 01:03:17,242 | INFO     | zombie collector waiting for pid 4625
[2025-06-03 21:03:30] 2025-06-04 01:03:17,242 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 21:03:30] 2025-06-04 01:03:17,242 | INFO     | collected zombie processes
[2025-06-03 21:03:30] 2025-06-04 01:03:17,242 | INFO     | will attempt to kill all subprocesses of pid=4625
[2025-06-03 21:03:30] 2025-06-04 01:03:17,336 | INFO     | process IDs to be killed: [4625] (in reverse order)
[2025-06-03 21:03:30] 2025-06-04 01:03:17,432 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 21:03:30] 2025-06-04 01:03:17,432 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 21:03:30] 2025-06-04 01:03:17,436 | INFO     | did not find any defunct processes belonging to 4625
[2025-06-03 21:03:30] 2025-06-04 01:03:17,438 | INFO     | did not find any defunct processes belonging to 4625
[2025-06-03 21:03:30] 2025-06-04 01:03:17,438 | INFO     | ready for new job
[2025-06-03 21:03:30] 2025-06-04 01:03:17,438 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 21:03:30] 2025-06-04 01:03:17,439 | INFO     | **************************************
[2025-06-03 21:03:30] 2025-06-04 01:03:17,439 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 21:03:30] 2025-06-04 01:03:17,440 | INFO     | **************************************
[2025-06-03 21:03:30] 2025-06-04 01:03:17,440 | INFO     | 
[2025-06-03 21:03:30] 2025-06-04 01:03:17,440 | INFO     | architecture information:
[2025-06-03 21:03:30] 2025-06-04 01:03:17,441 | INFO     | executing command: cat /etc/os-release
[2025-06-03 21:03:30] 2025-06-04 01:03:17,455 | INFO     | cat /etc/os-release:
[2025-06-03 21:03:30] NAME="CentOS Linux"
[2025-06-03 21:03:30] VERSION="7 (Core)"
[2025-06-03 21:03:30] ID="centos"
[2025-06-03 21:03:30] ID_LIKE="rhel fedora"
[2025-06-03 21:03:30] VERSION_ID="7"
[2025-06-03 21:03:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 21:03:30] ANSI_COLOR="0;31"
[2025-06-03 21:03:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 21:03:30] HOME_URL="https://www.centos.org/"
[2025-06-03 21:03:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 21:03:30] 
[2025-06-03 21:03:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 21:03:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 21:03:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 21:03:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 21:03:30] 
[2025-06-03 21:03:30] 2025-06-04 01:03:17,455 | INFO     | **************************************
[2025-06-03 21:03:30] 2025-06-04 01:03:17,958 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 21:03:30] 2025-06-04 01:03:17,974 | INFO     | sufficient remaining disk space (29425139712 B)
[2025-06-03 21:03:30] 2025-06-04 01:03:17,974 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 21:03:30] 2025-06-04 01:03:17,974 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 21:03:30] 2025-06-04 01:03:17,974 | INFO     | update_server=False
[2025-06-03 21:03:30] 2025-06-04 01:03:17,974 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 21:03:30] 2025-06-04 01:03:17,975 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:03:30] 2025-06-04 01:03:17,975 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:03:30] 2025-06-04 01:03:17,975 | INFO     | aborting loop
[2025-06-03 21:03:30] 2025-06-04 01:03:17,976 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 21:03:30] 2025-06-04 01:03:17,976 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 21:03:30] 2025-06-04 01:03:17,976 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 21:03:30] 2025-06-04 01:03:17,976 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 21:03:30] 2025-06-04 01:03:18,171 | INFO     | all payload control threads have been joined
[2025-06-03 21:03:30] 2025-06-04 01:03:18,609 | INFO     | all data control threads have been joined
[2025-06-03 21:03:30] 2025-06-04 01:03:18,689 | INFO     | all job control threads have been joined
[2025-06-03 21:03:30] 2025-06-04 01:03:18,980 | INFO     | [job] retrieve thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:18,980 | INFO     | [job] queue monitor thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:18,981 | INFO     | [job] job monitor thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:18,982 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:19,177 | INFO     | [payload] control thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:19,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 21:03:30] 2025-06-04 01:03:19,407 | INFO     | [job] validate thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:19,614 | INFO     | [data] control thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:19,665 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:19,694 | INFO     | [job] control thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:19,771 | INFO     | [payload] validate_post thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:19,805 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:19,956 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:20,161 | INFO     | [data] copytool_in thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:20,272 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 21:03:30] 2025-06-04 01:03:20,496 | INFO     | [payload] failed_post thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:21,264 | INFO     | [data] copytool_out thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:24,273 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 21:03:30] 2025-06-04 01:03:24,811 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140379020232512)>', '<ExcThread(monitor, started 140378422359808)>']
[2025-06-03 21:03:30] 2025-06-04 01:03:25,012 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 21:03:30] 2025-06-04 01:03:25,013 | INFO     | [monitor] control thread has ended
[2025-06-03 21:03:30] 2025-06-04 01:03:29,822 | INFO     | all workflow threads have been joined
[2025-06-03 21:03:30] 2025-06-04 01:03:29,822 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 21:03:30] 2025-06-04 01:03:29,822 | INFO     | traces error code: 0
[2025-06-03 21:03:30] 2025-06-04 01:03:29,822 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 21:03:30] 2025-06-04 01:03:29,917 [wrapper] ==== pilot stdout END ====
[2025-06-03 21:03:30] 2025-06-04 01:03:29,921 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 21:03:30] 2025-06-04 01:03:29,925 [wrapper] pilotpid: 30306
[2025-06-03 21:03:30] 2025-06-04 01:03:29,929 [wrapper] Pilot exit status: 0
[2025-06-03 21:03:30] 2025-06-04 01:03:29,944 [wrapper] pandaids: 6678014811
[2025-06-03 21:03:30] 2025-06-04 01:03:29,980 [wrapper] cleanup supervisor_pilot  7261 30307
[2025-06-03 21:03:30] 2025-06-04 01:03:29,985 [wrapper] Test setup, not cleaning
[2025-06-03 21:03:30] 2025-06-04 01:03:29,989 [wrapper] apfmon messages muted
[2025-06-03 21:03:30] 2025-06-04 01:03:29,993 [wrapper] ==== wrapper stdout END ====
[2025-06-03 21:03:30] 2025-06-04 01:03:29,997 [wrapper] ==== wrapper stderr END ====
[2025-06-03 21:03:30]  *** Error codes and diagnostics ***
[2025-06-03 21:03:30]     "exeErrorCode": 0,
[2025-06-03 21:03:30]     "exeErrorDiag": "",
[2025-06-03 21:03:30]     "pilotErrorCode": 0,
[2025-06-03 21:03:30]     "pilotErrorDiag": "",
[2025-06-03 21:03:30]  *** Listing of results directory ***
[2025-06-03 21:03:30] total 388076
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 15:41 pilot3.tar.gz
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 16:02 queuedata.json
[2025-06-03 21:03:30] -rwx------ 1 boincer umatlas     37140 Jun  3 16:03 runpilot2-wrapper.sh
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas       100 Jun  3 19:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 21:03:30] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 19:56 run_atlas
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas       105 Jun  3 19:56 job.xml
[2025-06-03 21:03:30] -rw-r--r-- 2 boincer umatlas 213886230 Jun  3 19:56 EVNT.45006593._001779.pool.root.1
[2025-06-03 21:03:30] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 19:56 start_atlas.sh
[2025-06-03 21:03:30] drwxrwx--x 2 boincer umatlas      4096 Jun  3 19:56 shared
[2025-06-03 21:03:30] -rw-r--r-- 2 boincer umatlas    508871 Jun  3 19:56 input.tar.gz
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas         0 Jun  3 19:56 boinc_lockfile
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 19:56 pandaJob.out
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas    986077 Jun  3 19:56 agis_schedconf.cvmfs.json
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas   1603667 Jun  3 19:56 agis_ddmendpoints.agis.ALL.json
[2025-06-03 21:03:30] drwx------ 4 boincer umatlas      4096 Jun  3 19:56 pilot3
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas      5868 Jun  3 21:01 init_data.xml
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas 178171134 Jun  3 21:02 HITS.45006595._044406.pool.root.1
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas        95 Jun  3 21:02 pilot_heartbeat.json
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 21:02 boinc_mmap_file
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas        27 Jun  3 21:02 wrapper_checkpoint.txt
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas       529 Jun  3 21:03 boinc_task_state.xml
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas      1049 Jun  3 21:03 memory_monitor_summary.json
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas    363520 Jun  3 21:03 log.45006595._044406.job.log.tgz.1
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas      7750 Jun  3 21:03 heartbeat.json
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas      4476 Jun  3 21:03 pilotlog.txt
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas    387364 Jun  3 21:03 log.45006595._044406.job.log.1
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas       357 Jun  3 21:03 output.list
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas       620 Jun  3 21:03 runtime_log
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas    768000 Jun  3 21:03 result.tar.gz
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas      8661 Jun  3 21:03 runtime_log.err
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas       659 Jun  3 21:03 3aiNDmz1mg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyylKDm0oMEEn.diag
[2025-06-03 21:03:30] -rw-r--r-- 1 boincer umatlas     21420 Jun  3 21:03 stderr.txt
[2025-06-03 21:03:30] HITS file was successfully produced:
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas 178171134 Jun  3 21:02 shared/HITS.pool.root.1
[2025-06-03 21:03:30]  *** Contents of shared directory: ***
[2025-06-03 21:03:30] total 384144
[2025-06-03 21:03:30] -rw-r--r-- 2 boincer umatlas 213886230 Jun  3 19:56 ATLAS.root_0
[2025-06-03 21:03:30] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 19:56 start_atlas.sh
[2025-06-03 21:03:30] -rw-r--r-- 2 boincer umatlas    508871 Jun  3 19:56 input.tar.gz
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas 178171134 Jun  3 21:02 HITS.pool.root.1
[2025-06-03 21:03:30] -rw------- 1 boincer umatlas    768000 Jun  3 21:03 result.tar.gz
21:03:31 (25957): run_atlas exited; CPU time 40824.445837
21:03:31 (25957): called boinc_finish(0)

</stderr_txt>
]]>

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