Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:56:27 (3901): wrapper (7.7.26015): starting
19:56:27 (3901): wrapper: running run_atlas (--nthreads 8)
[2025-06-03 19:56:27] Arguments: --nthreads 8
[2025-06-03 19:56:27] Threads: 8
[2025-06-03 19:56:27] Checking for CVMFS
[2025-06-03 19:56:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 19:56:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 19:56:27] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 19:56:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 19:56:27] 2.11.2.0 2924 14904 99720 146761 3 56 16243302 20275201 1 130560 0 6530685 99.955 2915210 4553 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-03 19:56:27] CVMFS is ok
[2025-06-03 19:56:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 19:56:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 19:56:27] Further information can be found at the LHC@home message board.
[2025-06-03 19:56:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 19:56:27] Checking for apptainer binary...
[2025-06-03 19:56:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 19:56:27] Running /usr/bin/apptainer --version
[2025-06-03 19:56:27] apptainer version 1.3.2-1.el7
[2025-06-03 19:56:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 19:56:29] c-204-30.aglt2.org
[2025-06-03 19:56:29] apptainer works
[2025-06-03 19:56:29] Set ATHENA_PROC_NUMBER=8
[2025-06-03 19:56:29] Set ATHENA_CORE_NUMBER=8
[2025-06-03 19:56:29] Starting ATLAS job with PandaID=6678014598
[2025-06-03 19:56:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 21:46:40]  *** The last 200 lines of the pilot log: ***
[2025-06-03 21:46:40] 2025-06-04 01:46:27,140 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678014598/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:46:40] 2025-06-04 01:46:27,141 | INFO     | extracted standard info from prmon json
[2025-06-03 21:46:40] 2025-06-04 01:46:27,141 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 21:46:40] 2025-06-04 01:46:27,142 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 21:46:40] 2025-06-04 01:46:27,142 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 21:46:40] 2025-06-04 01:46:27,142 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 21:46:40] 2025-06-04 01:46:27,144 | INFO     | fitting pss+swap vs Time
[2025-06-03 21:46:40] 2025-06-04 01:46:27,145 | INFO     | sum of square deviations: 390582207.0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,145 | INFO     | sum of deviations: -1732550060.0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,145 | INFO     | mean x: 1748998301.5
[2025-06-03 21:46:40] 2025-06-04 01:46:27,146 | INFO     | mean y: 2463061.277777778
[2025-06-03 21:46:40] 2025-06-04 01:46:27,146 | INFO     | -- intersect: 7760694383.381304
[2025-06-03 21:46:40] 2025-06-04 01:46:27,146 | INFO     | intersect: 7760694383.381304
[2025-06-03 21:46:40] 2025-06-04 01:46:27,146 | INFO     | chi2: 2.36477574349328
[2025-06-03 21:46:40] 2025-06-04 01:46:27,146 | INFO     | sum of square deviations: 338804492.0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,147 | INFO     | sum of deviations: 5304479175.0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,147 | INFO     | mean x: 1748998149.0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,147 | INFO     | mean y: 2483009.368932039
[2025-06-03 21:46:40] 2025-06-04 01:46:27,147 | INFO     | -- intersect: -27380637573.589714
[2025-06-03 21:46:40] 2025-06-04 01:46:27,147 | INFO     | intersect: -27380637573.589714
[2025-06-03 21:46:40] 2025-06-04 01:46:27,148 | INFO     | chi2: 1.607781349352847
[2025-06-03 21:46:40] 2025-06-04 01:46:27,148 | INFO     | current chi2=1.607781349352847 (change=32.01125503013619 %)
[2025-06-03 21:46:40] 2025-06-04 01:46:27,148 | INFO     | sum of square deviations: 291817564.5
[2025-06-03 21:46:40] 2025-06-04 01:46:27,148 | INFO     | sum of deviations: 5147567167.000002
[2025-06-03 21:46:40] 2025-06-04 01:46:27,149 | INFO     | mean x: 1748997996.5
[2025-06-03 21:46:40] 2025-06-04 01:46:27,149 | INFO     | mean y: 2482499.8163265307
[2025-06-03 21:46:40] 2025-06-04 01:46:27,149 | INFO     | -- intersect: -30849274752.554905
[2025-06-03 21:46:40] 2025-06-04 01:46:27,149 | INFO     | intersect: -30849274752.554905
[2025-06-03 21:46:40] 2025-06-04 01:46:27,149 | INFO     | chi2: 1.6111432226297475
[2025-06-03 21:46:40] 2025-06-04 01:46:27,149 | INFO     | current chi2=1.6111432226297475 (change=-0.2091001539639526 %)
[2025-06-03 21:46:40] 2025-06-04 01:46:27,149 | INFO     | right removable region: 97
[2025-06-03 21:46:40] 2025-06-04 01:46:27,150 | INFO     | sum of square deviations: 338804492.0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,150 | INFO     | sum of deviations: -17379377691.0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,150 | INFO     | mean x: 1748998454.0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,150 | INFO     | mean y: 2508116.844660194
[2025-06-03 21:46:40] 2025-06-04 01:46:27,151 | INFO     | -- intersect: 89719455296.63911
[2025-06-03 21:46:40] 2025-06-04 01:46:27,151 | INFO     | intersect: 89719455296.63911
[2025-06-03 21:46:40] 2025-06-04 01:46:27,151 | INFO     | chi2: 0.899869934387548
[2025-06-03 21:46:40] 2025-06-04 01:46:27,151 | INFO     | current chi2=0.899869934387548 (change=61.94692300681977 %)
[2025-06-03 21:46:40] 2025-06-04 01:46:27,151 | INFO     | sum of square deviations: 291817564.5
[2025-06-03 21:46:40] 2025-06-04 01:46:27,152 | INFO     | sum of deviations: -15043727005.5
[2025-06-03 21:46:40] 2025-06-04 01:46:27,152 | INFO     | mean x: 1748998606.5
[2025-06-03 21:46:40] 2025-06-04 01:46:27,152 | INFO     | mean y: 2500393.6428571427
[2025-06-03 21:46:40] 2025-06-04 01:46:27,152 | INFO     | -- intersect: 90166564418.60294
[2025-06-03 21:46:40] 2025-06-04 01:46:27,152 | INFO     | intersect: 90166564418.60294
[2025-06-03 21:46:40] 2025-06-04 01:46:27,152 | INFO     | chi2: 0.8891881977273411
[2025-06-03 21:46:40] 2025-06-04 01:46:27,153 | INFO     | current chi2=0.8891881977273411 (change=1.1870311755083673 %)
[2025-06-03 21:46:40] 2025-06-04 01:46:27,153 | INFO     | left removable region: 20
[2025-06-03 21:46:40] 2025-06-04 01:46:27,153 | INFO     | sum of square deviations: 141539398.0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,153 | INFO     | sum of deviations: -1459497163.0000002
[2025-06-03 21:46:40] 2025-06-04 01:46:27,153 | INFO     | mean x: 1748998576.0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,154 | INFO     | mean y: 2496887.4025974027
[2025-06-03 21:46:40] 2025-06-04 01:46:27,154 | INFO     | -- intersect: 18037464506.545925
[2025-06-03 21:46:40] 2025-06-04 01:46:27,154 | INFO     | intersect: 18037464506.545925
[2025-06-03 21:46:40] 2025-06-04 01:46:27,154 | INFO     | chi2: 0.032569864365366095
[2025-06-03 21:46:40] 2025-06-04 01:46:27,154 | INFO     | -- intersect: 18037464506.545925
[2025-06-03 21:46:40] 2025-06-04 01:46:27,154 | INFO     | current memory leak: -10.31 B/s (using 77 data points, chi2=0.03)
[2025-06-03 21:46:40] 2025-06-04 01:46:27,155 | INFO     | ..............................
[2025-06-03 21:46:40] 2025-06-04 01:46:27,155 | INFO     | . Timing measurements:
[2025-06-03 21:46:40] 2025-06-04 01:46:27,155 | INFO     | . get job = 0 s
[2025-06-03 21:46:40] 2025-06-04 01:46:27,155 | INFO     | . initial setup = 2 s
[2025-06-03 21:46:40] 2025-06-04 01:46:27,155 | INFO     | . payload setup = 11 s
[2025-06-03 21:46:40] 2025-06-04 01:46:27,155 | INFO     | . stage-in = 0 s
[2025-06-03 21:46:40] 2025-06-04 01:46:27,155 | INFO     | . payload execution = 6540 s
[2025-06-03 21:46:40] 2025-06-04 01:46:27,156 | INFO     | . stage-out = 0 s
[2025-06-03 21:46:40] 2025-06-04 01:46:27,156 | INFO     | . log creation = 0 s
[2025-06-03 21:46:40] 2025-06-04 01:46:27,156 | INFO     | ..............................
[2025-06-03 21:46:40] 2025-06-04 01:46:27,250 | INFO     | 
[2025-06-03 21:46:40] 2025-06-04 01:46:27,250 | INFO     | job summary report
[2025-06-03 21:46:40] 2025-06-04 01:46:27,251 | INFO     | --------------------------------------------------
[2025-06-03 21:46:40] 2025-06-04 01:46:27,251 | INFO     | PanDA job id: 6678014598
[2025-06-03 21:46:40] 2025-06-04 01:46:27,251 | INFO     | task id: 45006595
[2025-06-03 21:46:40] 2025-06-04 01:46:27,251 | INFO     | errors: (none)
[2025-06-03 21:46:40] 2025-06-04 01:46:27,251 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 21:46:40] 2025-06-04 01:46:27,251 | INFO     | pilot state: finished 
[2025-06-03 21:46:40] 2025-06-04 01:46:27,252 | INFO     | transexitcode: 0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,252 | INFO     | exeerrorcode: 0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,252 | INFO     | exeerrordiag: 
[2025-06-03 21:46:40] 2025-06-04 01:46:27,252 | INFO     | exitcode: 0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,252 | INFO     | exitmsg: OK
[2025-06-03 21:46:40] 2025-06-04 01:46:27,252 | INFO     | cpuconsumptiontime: 48657 s
[2025-06-03 21:46:40] 2025-06-04 01:46:27,253 | INFO     | nevents: 400
[2025-06-03 21:46:40] 2025-06-04 01:46:27,253 | INFO     | neventsw: 0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,253 | INFO     | pid: 14068
[2025-06-03 21:46:40] 2025-06-04 01:46:27,253 | INFO     | pgrp: 14068
[2025-06-03 21:46:40] 2025-06-04 01:46:27,253 | INFO     | corecount: 8
[2025-06-03 21:46:40] 2025-06-04 01:46:27,253 | INFO     | event service: False
[2025-06-03 21:46:40] 2025-06-04 01:46:27,254 | INFO     | sizes: {0: 2405184, 6: 2405390, 11: 2405418, 6555: 2432315, 6556: 2441256, 6557: 2441312, 6565: 2441610}
[2025-06-03 21:46:40] 2025-06-04 01:46:27,254 | INFO     | --------------------------------------------------
[2025-06-03 21:46:40] 2025-06-04 01:46:27,254 | INFO     | 
[2025-06-03 21:46:40] 2025-06-04 01:46:27,254 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 21:46:40] 2025-06-04 01:46:27,281 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,282 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,282 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,282 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,282 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,282 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,283 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,283 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,283 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,283 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,283 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,283 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,284 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,284 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,284 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,284 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,284 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,284 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 21:46:40] 2025-06-04 01:46:27,285 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,285 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 21:46:40] 2025-06-04 01:46:27,285 | INFO     | job 6678014598 has completed (purged errors)
[2025-06-03 21:46:40] 2025-06-04 01:46:27,285 | INFO     | overall cleanup function is called
[2025-06-03 21:46:40] 2025-06-04 01:46:27,778 | INFO     | PID=7526 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-03 21:46:40] 2025-06-04 01:46:28,293 | INFO     | --- collectZombieJob: --- 10, [14068]
[2025-06-03 21:46:40] 2025-06-04 01:46:28,293 | INFO     | zombie collector waiting for pid 14068
[2025-06-03 21:46:40] 2025-06-04 01:46:28,294 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 21:46:40] 2025-06-04 01:46:28,294 | INFO     | collected zombie processes
[2025-06-03 21:46:40] 2025-06-04 01:46:28,294 | INFO     | will attempt to kill all subprocesses of pid=14068
[2025-06-03 21:46:40] 2025-06-04 01:46:28,380 | INFO     | process IDs to be killed: [14068] (in reverse order)
[2025-06-03 21:46:40] 2025-06-04 01:46:28,433 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 21:46:40] 2025-06-04 01:46:28,434 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 21:46:40] 2025-06-04 01:46:28,438 | INFO     | did not find any defunct processes belonging to 14068
[2025-06-03 21:46:40] 2025-06-04 01:46:28,440 | INFO     | did not find any defunct processes belonging to 14068
[2025-06-03 21:46:40] 2025-06-04 01:46:28,440 | INFO     | ready for new job
[2025-06-03 21:46:40] 2025-06-04 01:46:28,440 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 21:46:40] 2025-06-04 01:46:28,442 | INFO     | **************************************
[2025-06-03 21:46:40] 2025-06-04 01:46:28,442 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 21:46:40] 2025-06-04 01:46:28,442 | INFO     | **************************************
[2025-06-03 21:46:40] 2025-06-04 01:46:28,442 | INFO     | 
[2025-06-03 21:46:40] 2025-06-04 01:46:28,443 | INFO     | architecture information:
[2025-06-03 21:46:40] 2025-06-04 01:46:28,443 | INFO     | executing command: cat /etc/os-release
[2025-06-03 21:46:40] 2025-06-04 01:46:28,462 | INFO     | cat /etc/os-release:
[2025-06-03 21:46:40] NAME="CentOS Linux"
[2025-06-03 21:46:40] VERSION="7 (Core)"
[2025-06-03 21:46:40] ID="centos"
[2025-06-03 21:46:40] ID_LIKE="rhel fedora"
[2025-06-03 21:46:40] VERSION_ID="7"
[2025-06-03 21:46:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 21:46:40] ANSI_COLOR="0;31"
[2025-06-03 21:46:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 21:46:40] HOME_URL="https://www.centos.org/"
[2025-06-03 21:46:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 21:46:40] 
[2025-06-03 21:46:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 21:46:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 21:46:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 21:46:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 21:46:40] 
[2025-06-03 21:46:40] 2025-06-04 01:46:28,462 | INFO     | **************************************
[2025-06-03 21:46:40] 2025-06-04 01:46:28,966 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 21:46:40] 2025-06-04 01:46:28,984 | INFO     | sufficient remaining disk space (18617466880 B)
[2025-06-03 21:46:40] 2025-06-04 01:46:28,985 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 21:46:40] 2025-06-04 01:46:28,985 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 21:46:40] 2025-06-04 01:46:28,985 | INFO     | update_server=False
[2025-06-03 21:46:40] 2025-06-04 01:46:28,985 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 21:46:40] 2025-06-04 01:46:28,986 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:46:40] 2025-06-04 01:46:28,986 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:46:40] 2025-06-04 01:46:28,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 21:46:40] 2025-06-04 01:46:28,987 | INFO     | aborting loop
[2025-06-03 21:46:40] 2025-06-04 01:46:29,022 | INFO     | all payload control threads have been joined
[2025-06-03 21:46:40] 2025-06-04 01:46:29,219 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 21:46:40] 2025-06-04 01:46:29,672 | INFO     | all data control threads have been joined
[2025-06-03 21:46:40] 2025-06-04 01:46:29,784 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 21:46:40] 2025-06-04 01:46:29,784 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 21:46:40] 2025-06-04 01:46:29,784 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 21:46:40] 2025-06-04 01:46:29,991 | INFO     | [job] retrieve thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:29,992 | INFO     | [job] queue monitor thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:29,993 | INFO     | [job] job monitor thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:30,028 | INFO     | [payload] control thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:30,149 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:30,151 | INFO     | [data] copytool_in thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:30,420 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:30,523 | INFO     | all job control threads have been joined
[2025-06-03 21:46:40] 2025-06-04 01:46:30,579 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:30,678 | INFO     | [data] control thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:30,712 | INFO     | [payload] validate_post thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:30,748 | INFO     | [payload] failed_post thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:30,993 | INFO     | [data] copytool_out thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:31,361 | INFO     | [job] validate thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:31,366 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:31,528 | INFO     | [job] control thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:33,225 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 21:46:40] 2025-06-04 01:46:34,964 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139948948174656)>', '<ExcThread(monitor, started 139948187432704)>']
[2025-06-03 21:46:40] 2025-06-04 01:46:35,811 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 21:46:40] 2025-06-04 01:46:35,812 | INFO     | [monitor] control thread has ended
[2025-06-03 21:46:40] 2025-06-04 01:46:39,989 | INFO     | all workflow threads have been joined
[2025-06-03 21:46:40] 2025-06-04 01:46:39,990 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 21:46:40] 2025-06-04 01:46:39,990 | INFO     | traces error code: 0
[2025-06-03 21:46:40] 2025-06-04 01:46:39,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 21:46:40] 2025-06-04 01:46:40,110 [wrapper] ==== pilot stdout END ====
[2025-06-03 21:46:40] 2025-06-04 01:46:40,115 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 21:46:40] 2025-06-04 01:46:40,120 [wrapper] pilotpid: 7526
[2025-06-03 21:46:40] 2025-06-04 01:46:40,124 [wrapper] Pilot exit status: 0
[2025-06-03 21:46:40] 2025-06-04 01:46:40,144 [wrapper] pandaids: 6678014598
[2025-06-03 21:46:40] 2025-06-04 01:46:40,186 [wrapper] cleanup supervisor_pilot 18185 7527
[2025-06-03 21:46:40] 2025-06-04 01:46:40,191 [wrapper] Test setup, not cleaning
[2025-06-03 21:46:40] 2025-06-04 01:46:40,195 [wrapper] apfmon messages muted
[2025-06-03 21:46:40] 2025-06-04 01:46:40,199 [wrapper] ==== wrapper stdout END ====
[2025-06-03 21:46:40] 2025-06-04 01:46:40,204 [wrapper] ==== wrapper stderr END ====
[2025-06-03 21:46:40]  *** Error codes and diagnostics ***
[2025-06-03 21:46:40]     "exeErrorCode": 0,
[2025-06-03 21:46:40]     "exeErrorDiag": "",
[2025-06-03 21:46:40]     "pilotErrorCode": 0,
[2025-06-03 21:46:40]     "pilotErrorDiag": "",
[2025-06-03 21:46:40]  *** Listing of results directory ***
[2025-06-03 21:46:40] total 383124
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 15:41 pilot3.tar.gz
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 15:57 queuedata.json
[2025-06-03 21:46:40] -rwx------ 1 boincer umatlas     37140 Jun  3 15:57 runpilot2-wrapper.sh
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas       100 Jun  3 19:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 21:46:40] -rwxr-xr-x 1 boincer umatlas      7986 Jun  3 19:56 run_atlas
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas       105 Jun  3 19:56 job.xml
[2025-06-03 21:46:40] -rw-r--r-- 2 boincer umatlas 214401212 Jun  3 19:56 EVNT.45006593._001771.pool.root.1
[2025-06-03 21:46:40] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 19:56 start_atlas.sh
[2025-06-03 21:46:40] drwxrwx--x 2 boincer umatlas      4096 Jun  3 19:56 shared
[2025-06-03 21:46:40] -rw-r--r-- 2 boincer umatlas    508879 Jun  3 19:56 input.tar.gz
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas         0 Jun  3 19:56 boinc_lockfile
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas      2525 Jun  3 19:56 pandaJob.out
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas    986077 Jun  3 19:56 agis_schedconf.cvmfs.json
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas   1603667 Jun  3 19:56 agis_ddmendpoints.agis.ALL.json
[2025-06-03 21:46:40] drwx------ 4 boincer umatlas      4096 Jun  3 19:56 pilot3
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas      5905 Jun  3 21:45 init_data.xml
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas 172218071 Jun  3 21:45 HITS.45006595._044201.pool.root.1
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas      8192 Jun  3 21:46 boinc_mmap_file
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas        27 Jun  3 21:46 wrapper_checkpoint.txt
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas       529 Jun  3 21:46 boinc_task_state.xml
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas      1063 Jun  3 21:46 memory_monitor_summary.json
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas        95 Jun  3 21:46 pilot_heartbeat.json
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas    321720 Jun  3 21:46 log.45006595._044201.job.log.tgz.1
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas      7750 Jun  3 21:46 heartbeat.json
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas      4353 Jun  3 21:46 pilotlog.txt
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas    607747 Jun  3 21:46 log.45006595._044201.job.log.1
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas       357 Jun  3 21:46 output.list
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas       620 Jun  3 21:46 runtime_log
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas    952320 Jun  3 21:46 result.tar.gz
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas      8659 Jun  3 21:46 runtime_log.err
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas       658 Jun  3 21:46 Bx7MDmRwmg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYxlKDmj7e7nm.diag
[2025-06-03 21:46:40] -rw-r--r-- 1 boincer umatlas     20875 Jun  3 21:46 stderr.txt
[2025-06-03 21:46:40] HITS file was successfully produced:
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas 172218071 Jun  3 21:45 shared/HITS.pool.root.1
[2025-06-03 21:46:40]  *** Contents of shared directory: ***
[2025-06-03 21:46:40] total 379016
[2025-06-03 21:46:40] -rw-r--r-- 2 boincer umatlas 214401212 Jun  3 19:56 ATLAS.root_0
[2025-06-03 21:46:40] -rw-r--r-- 2 boincer umatlas     15093 Jun  3 19:56 start_atlas.sh
[2025-06-03 21:46:40] -rw-r--r-- 2 boincer umatlas    508879 Jun  3 19:56 input.tar.gz
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas 172218071 Jun  3 21:45 HITS.pool.root.1
[2025-06-03 21:46:40] -rw------- 1 boincer umatlas    952320 Jun  3 21:46 result.tar.gz
21:46:41 (3901): run_atlas exited; CPU time 48615.412369
21:46:41 (3901): called boinc_finish(0)

</stderr_txt>
]]>

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