Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
09:39:43 (1065616): wrapper (7.7.26015): starting
09:39:43 (1065616): wrapper: running run_atlas (--nthreads 3)
[2025-06-04 09:39:43] Arguments: --nthreads 3
[2025-06-04 09:39:43] Threads: 3
[2025-06-04 09:39:43] Checking for CVMFS
[2025-06-04 09:39:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:39:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:39:43] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:39:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:39:43] 2.9.2.0 360883 2245 71372 146772 2 187 32474269 36864001 0 130560 0 1928044 99.992 526780 38075 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 09:39:43] CVMFS is ok
[2025-06-04 09:39:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:39:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:39:44] Further information can be found at the LHC@home message board.
[2025-06-04 09:39:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:39:44] Checking for apptainer binary...
[2025-06-04 09:39:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:39:44] Running /usr/bin/apptainer --version
[2025-06-04 09:39:44] apptainer version 1.3.6-6.1
[2025-06-04 09:39:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:39:44] thA335
[2025-06-04 09:39:44] apptainer works
[2025-06-04 09:39:44] Set ATHENA_PROC_NUMBER=3
[2025-06-04 09:39:44] Set ATHENA_CORE_NUMBER=3
[2025-06-04 09:39:44] Starting ATLAS job with PandaID=6678014661
[2025-06-04 09:39:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:51:34]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | WARNING  | wrong length of table data, x=[1749023129.0, 1749023190.0], y=[2703729.0, 2705574.0] (must be same and length>=4)
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | ..............................
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . Timing measurements:
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . get job = 0 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . initial setup = 1 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . payload setup = 8 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . stage-in = 0 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . payload execution = 535 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . stage-out = 0 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . log creation = 0 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | ..............................
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6678014661/pilotlog.txt
[2025-06-04 09:51:34] 2025-06-04 07:51:22,048 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-04 09:51:34] - Log from pilotlog.txt -
[2025-06-04 09:51:34] 2025-06-04 07:51:22,037 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 09:51:34] 2025-06-04 07:51:22,037 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678014661/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | INFO     | extracted standard info from prmon json
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | WARNING  | wrong length of table data, x=[1749023129.0, 1749023190.0], y=[2703729.0, 2705574.0] (must be same and length>=4)
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | ..............................
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . Timing measurements:
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . get job = 0 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . initial setup = 1 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . payload setup = 8 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . stage-in = 0 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . payload execution = 535 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . stage-out = 0 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . log creation = 0 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | ..............................
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6678014661/pilotlog.txt
[2025-06-04 09:51:34] 2025-06-04 07:51:22,048 | WARNING  | 
[2025-06-04 09:51:34] [begin log extracts]
[2025-06-04 09:51:34] - Log from pilotlog.txt -
[2025-06-04 09:51:34] 2025-06-04 07:51:22,037 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 09:51:34] 2025-06-04 07:51:22,037 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678014661/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | INFO     | extracted standard info from prmon json
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:51:34] 2025-06-04 07:51:22,038 | WARNING  | wrong length of table data, x=[1749023129.0, 1749023190.0], y=[2703729.0, 2705574.0] (must be same and length>=4)
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | ..............................
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . Timing measurements:
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . get job = 0 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . initial setup = 1 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . payload setup = 8 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . stage-in = 0 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . payload execution = 535 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . stage-out = 0 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | . log creation = 0 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | ..............................
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-04 09:51:34] 2025-06-04 07:51:22,039 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-6678014661/pilotlog.txt
[2025-06-04 09:51:34] [end log extracts]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,048 | WARNING  | pilotErrorCodes = [1305, 1328] (will report primary/first error code)
[2025-06-04 09:51:34] 2025-06-04 07:51:22,049 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | 
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | job summary report
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | --------------------------------------------------
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | PanDA job id: 6678014661
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | task id: 45006595
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-04 07:49:12,254 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | error 2/2: 1328: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "Co
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | pilot error code: 1328
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | pilot error diag: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "C
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | pilot state: failed 
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | transexitcode: 65
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | exeerrorcode: 0
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | exeerrordiag: 
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | exitcode: 65
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | exitmsg: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | cpuconsumptiontime: 915 s
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | nevents: 0
[2025-06-04 09:51:34] 2025-06-04 07:51:22,081 | INFO     | neventsw: 0
[2025-06-04 09:51:34] 2025-06-04 07:51:22,082 | INFO     | pid: 1075769
[2025-06-04 09:51:34] 2025-06-04 07:51:22,082 | INFO     | pgrp: 1075769
[2025-06-04 09:51:34] 2025-06-04 07:51:22,082 | INFO     | corecount: 3
[2025-06-04 09:51:34] 2025-06-04 07:51:22,082 | INFO     | event service: False
[2025-06-04 09:51:34] 2025-06-04 07:51:22,082 | INFO     | sizes: {0: 2405187, 5: 2405393, 10: 2405449, 547: 2432328, 548: 2436625, 669: 2436739}
[2025-06-04 09:51:34] 2025-06-04 07:51:22,082 | INFO     | --------------------------------------------------
[2025-06-04 09:51:34] 2025-06-04 07:51:22,082 | INFO     | 
[2025-06-04 09:51:34] 2025-06-04 07:51:22,082 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 09:51:34] 2025-06-04 07:51:22,094 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,094 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,094 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,094 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,094 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | job 6678014661 has completed (purged errors)
[2025-06-04 09:51:34] 2025-06-04 07:51:22,095 | INFO     | overall cleanup function is called
[2025-06-04 09:51:34] 2025-06-04 07:51:23,101 | INFO     | --- collectZombieJob: --- 10, [1075769]
[2025-06-04 09:51:34] 2025-06-04 07:51:23,102 | INFO     | zombie collector waiting for pid 1075769
[2025-06-04 09:51:34] 2025-06-04 07:51:23,102 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:51:34] 2025-06-04 07:51:23,102 | INFO     | collected zombie processes
[2025-06-04 09:51:34] 2025-06-04 07:51:23,103 | INFO     | will attempt to kill all subprocesses of pid=1075769
[2025-06-04 09:51:34] 2025-06-04 07:51:23,143 | INFO     | process IDs to be killed: [1075769] (in reverse order)
[2025-06-04 09:51:34] 2025-06-04 07:51:23,170 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:51:34] 2025-06-04 07:51:23,170 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:51:34] 2025-06-04 07:51:23,171 | INFO     | did not find any defunct processes belonging to 1075769
[2025-06-04 09:51:34] 2025-06-04 07:51:23,172 | INFO     | did not find any defunct processes belonging to 1075769
[2025-06-04 09:51:34] 2025-06-04 07:51:23,172 | INFO     | ready for new job
[2025-06-04 09:51:34] 2025-06-04 07:51:23,172 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:51:34] 2025-06-04 07:51:23,173 | INFO     | **************************************
[2025-06-04 09:51:34] 2025-06-04 07:51:23,173 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:51:34] 2025-06-04 07:51:23,173 | INFO     | **************************************
[2025-06-04 09:51:34] 2025-06-04 07:51:23,173 | INFO     | 
[2025-06-04 09:51:34] 2025-06-04 07:51:23,173 | INFO     | architecture information:
[2025-06-04 09:51:34] 2025-06-04 07:51:23,174 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:51:34] 2025-06-04 07:51:23,183 | INFO     | cat /etc/os-release:
[2025-06-04 09:51:34] NAME="CentOS Linux"
[2025-06-04 09:51:34] VERSION="7 (Core)"
[2025-06-04 09:51:34] ID="centos"
[2025-06-04 09:51:34] ID_LIKE="rhel fedora"
[2025-06-04 09:51:34] VERSION_ID="7"
[2025-06-04 09:51:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:51:34] ANSI_COLOR="0;31"
[2025-06-04 09:51:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:51:34] HOME_URL="https://www.centos.org/"
[2025-06-04 09:51:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:51:34] 
[2025-06-04 09:51:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:51:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:51:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:51:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:51:34] 
[2025-06-04 09:51:34] 2025-06-04 07:51:23,183 | INFO     | **************************************
[2025-06-04 09:51:34] 2025-06-04 07:51:23,686 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 09:51:34] 2025-06-04 07:51:23,700 | INFO     | sufficient remaining disk space (824731238400 B)
[2025-06-04 09:51:34] 2025-06-04 07:51:23,700 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:51:34] 2025-06-04 07:51:23,701 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:51:34] 2025-06-04 07:51:23,701 | INFO     | update_server=False
[2025-06-04 09:51:34] 2025-06-04 07:51:23,701 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:51:34] 2025-06-04 07:51:23,701 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:51:34] 2025-06-04 07:51:23,701 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:51:34] 2025-06-04 07:51:23,701 | INFO     | aborting loop
[2025-06-04 09:51:34] 2025-06-04 07:51:23,701 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:51:34] 2025-06-04 07:51:23,915 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:51:34] 2025-06-04 07:51:23,916 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:51:34] 2025-06-04 07:51:23,916 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:51:34] 2025-06-04 07:51:24,101 | INFO     | all job control threads have been joined
[2025-06-04 09:51:34] 2025-06-04 07:51:24,160 | INFO     | all data control threads have been joined
[2025-06-04 09:51:34] 2025-06-04 07:51:24,274 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:51:34] 2025-06-04 07:51:24,353 | INFO     | all payload control threads have been joined
[2025-06-04 09:51:34] 2025-06-04 07:51:24,706 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:24,707 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:24,708 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:25,108 | INFO     | [job] control thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:25,165 | INFO     | [data] control thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:25,270 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:25,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:25,358 | INFO     | [payload] control thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:25,406 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:25,601 | INFO     | [job] validate thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:25,647 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:25,707 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:25,733 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:25,785 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:26,148 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:28,281 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:51:34] 2025-06-04 07:51:28,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139958830159680)>', '<ExcThread(monitor, started 139958211831552)>']
[2025-06-04 09:51:34] 2025-06-04 07:51:28,943 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:51:34] 2025-06-04 07:51:28,943 | INFO     | [monitor] control thread has ended
[2025-06-04 09:51:34] 2025-06-04 07:51:33,568 | INFO     | all workflow threads have been joined
[2025-06-04 09:51:34] 2025-06-04 07:51:33,569 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:51:34] 2025-06-04 07:51:33,570 | INFO     | traces error code: 0
[2025-06-04 09:51:34] 2025-06-04 07:51:33,570 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:51:34] 2025-06-04 07:51:33,617 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:51:34] 2025-06-04 07:51:33,620 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:51:34] 2025-06-04 07:51:33,622 [wrapper] pilotpid: 1069267
[2025-06-04 09:51:34] 2025-06-04 07:51:33,625 [wrapper] Pilot exit status: 0
[2025-06-04 09:51:34] 2025-06-04 07:51:33,632 [wrapper] pandaids: 6678014661
[2025-06-04 09:51:34] 2025-06-04 07:51:33,648 [wrapper] cleanup supervisor_pilot 1069273 1069268
[2025-06-04 09:51:34] 2025-06-04 07:51:33,651 [wrapper] Test setup, not cleaning
[2025-06-04 09:51:34] 2025-06-04 07:51:33,653 [wrapper] apfmon messages muted
[2025-06-04 09:51:34] 2025-06-04 07:51:33,656 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:51:34] 2025-06-04 07:51:33,659 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:51:34]  *** Error codes and diagnostics ***
[2025-06-04 09:51:34]     "exeErrorCode": 0,
[2025-06-04 09:51:34]     "exeErrorDiag": "",
[2025-06-04 09:51:34]     "pilotErrorCode": 1305,
[2025-06-04 09:51:34]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2025-06-04 09:51:34]  *** Listing of results directory ***
[2025-06-04 09:51:34] total 212916
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc    495897 Jun  3 21:41 pilot3.tar.gz
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc      5111 Jun  3 22:00 queuedata.json
[2025-06-04 09:51:34] -rwx------ 1 boinc boinc     37140 Jun  3 22:01 runpilot2-wrapper.sh
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc       100 Jun  4 09:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:51:34] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 09:39 run_atlas
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc       105 Jun  4 09:39 job.xml
[2025-06-04 09:51:34] -rw-r--r-- 2 boinc boinc 213593363 Jun  4 09:39 EVNT.45006593._001773.pool.root.1
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc      6678 Jun  4 09:39 init_data.xml
[2025-06-04 09:51:34] drwxrwx--x 2 boinc boinc      4096 Jun  4 09:39 shared
[2025-06-04 09:51:34] -rw-r--r-- 2 boinc boinc    508880 Jun  4 09:39 input.tar.gz
[2025-06-04 09:51:34] -rw-r--r-- 2 boinc boinc     15093 Jun  4 09:39 start_atlas.sh
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc         0 Jun  4 09:39 boinc_lockfile
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc      2525 Jun  4 09:39 pandaJob.out
[2025-06-04 09:51:34] -rw------- 1 boinc boinc    986745 Jun  4 09:39 agis_schedconf.cvmfs.json
[2025-06-04 09:51:34] -rw------- 1 boinc boinc   1603667 Jun  4 09:39 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:51:34] drwx------ 4 boinc boinc      4096 Jun  4 09:39 pilot3
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc       526 Jun  4 09:49 boinc_task_state.xml
[2025-06-04 09:51:34] -rw------- 1 boinc boinc      1001 Jun  4 09:49 memory_monitor_summary.json
[2025-06-04 09:51:34] -rw------- 1 boinc boinc    181739 Jun  4 09:49 log.45006595._044264.job.log.tgz.1
[2025-06-04 09:51:34] -rw------- 1 boinc boinc        95 Jun  4 09:50 pilot_heartbeat.json
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc      8192 Jun  4 09:51 boinc_mmap_file
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc        24 Jun  4 09:51 wrapper_checkpoint.txt
[2025-06-04 09:51:34] -rw------- 1 boinc boinc      9561 Jun  4 09:51 heartbeat.json
[2025-06-04 09:51:34] -rw------- 1 boinc boinc      4357 Jun  4 09:51 pilotlog.txt
[2025-06-04 09:51:34] -rw------- 1 boinc boinc    117344 Jun  4 09:51 log.45006595._044264.job.log.1
[2025-06-04 09:51:34] -rw------- 1 boinc boinc       188 Jun  4 09:51 output.list
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc       620 Jun  4 09:51 runtime_log
[2025-06-04 09:51:34] -rw------- 1 boinc boinc    317440 Jun  4 09:51 result.tar.gz
[2025-06-04 09:51:34] -rw------- 1 boinc boinc       651 Jun  4 09:51 MqEODm1zmg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrxlKDm2vDwgm.diag
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc      8580 Jun  4 09:51 runtime_log.err
[2025-06-04 09:51:34] -rw-r--r-- 1 boinc boinc     22036 Jun  4 09:51 stderr.txt
[2025-06-04 09:51:34] No HITS result produced
[2025-06-04 09:51:34]  *** Contents of shared directory: ***
[2025-06-04 09:51:34] total 209420
[2025-06-04 09:51:34] -rw-r--r-- 2 boinc boinc 213593363 Jun  4 09:39 ATLAS.root_0
[2025-06-04 09:51:34] -rw-r--r-- 2 boinc boinc    508880 Jun  4 09:39 input.tar.gz
[2025-06-04 09:51:34] -rw-r--r-- 2 boinc boinc     15093 Jun  4 09:39 start_atlas.sh
[2025-06-04 09:51:34] -rw------- 1 boinc boinc    317440 Jun  4 09:51 result.tar.gz
09:51:36 (1065616): run_atlas exited; CPU time 913.571165
09:51:36 (1065616): called boinc_finish(0)

</stderr_txt>
]]>

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