Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:06:57 (11977): wrapper (7.7.26015): starting
09:06:57 (11977): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:06:57] Arguments: --nthreads 8
[2025-06-04 09:06:57] Threads: 8
[2025-06-04 09:06:57] Checking for CVMFS
[2025-06-04 09:06:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:06:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:06:58] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:06:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:06:58] 2.11.2.0 13101 32902 93056 146771 3 60 15580455 25165824 3909 130560 0 17576102 99.783 19761609 2165 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 09:06:58] CVMFS is ok
[2025-06-04 09:06:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:06:58] Checking for apptainer binary...
[2025-06-04 09:06:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:06:58] Running /usr/bin/apptainer --version
[2025-06-04 09:06:58] apptainer version 1.3.2-1.el7
[2025-06-04 09:06:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:37:24] cg-vwn269.simple-grid.lan
[2025-06-04 09:37:24] apptainer works
[2025-06-04 09:37:24] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:37:24] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:37:24] Starting ATLAS job with PandaID=6678150155
[2025-06-04 09:37:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 14:05:02]  *** The last 200 lines of the pilot log: ***
[2025-06-04 14:05:02] 2025-06-04 11:45:35,693 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 14:05:02] 2025-06-04 11:45:35,694 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 14:05:02] 2025-06-04 11:45:35,694 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 14:05:02] 2025-06-04 11:45:35,699 | INFO     | fitting pss+swap vs Time
[2025-06-04 14:05:02] 2025-06-04 11:45:35,700 | INFO     | sum of square deviations: 3871990738.0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,702 | INFO     | sum of deviations: 89121338977.0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,702 | INFO     | mean x: 1749030393.5
[2025-06-04 14:05:02] 2025-06-04 11:45:35,702 | INFO     | mean y: 2427890.7327586208
[2025-06-04 14:05:02] 2025-06-04 11:45:35,702 | INFO     | -- intersect: -40254881882.870636
[2025-06-04 14:05:02] 2025-06-04 11:45:35,702 | INFO     | intersect: -40254881882.870636
[2025-06-04 14:05:02] 2025-06-04 11:45:35,703 | INFO     | chi2: 7.172854587448917
[2025-06-04 14:05:02] 2025-06-04 11:45:35,703 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,705 | INFO     | sum of deviations: 102285853957.99998
[2025-06-04 14:05:02] 2025-06-04 11:45:35,705 | INFO     | mean x: 1749030241.0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,710 | INFO     | mean y: 2435918.074889868
[2025-06-04 14:05:02] 2025-06-04 11:45:35,710 | INFO     | -- intersect: -49322363355.490364
[2025-06-04 14:05:02] 2025-06-04 11:45:35,710 | INFO     | intersect: -49322363355.490364
[2025-06-04 14:05:02] 2025-06-04 11:45:35,710 | INFO     | chi2: 6.464823991704024
[2025-06-04 14:05:02] 2025-06-04 11:45:35,711 | INFO     | current chi2=6.464823991704024 (change=9.870973781955756 %)
[2025-06-04 14:05:02] 2025-06-04 11:45:35,711 | INFO     | right removable region: 226
[2025-06-04 14:05:02] 2025-06-04 11:45:35,711 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,713 | INFO     | sum of deviations: 9628648760.999992
[2025-06-04 14:05:02] 2025-06-04 11:45:35,713 | INFO     | mean x: 1749030546.0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,713 | INFO     | mean y: 2477328.5726872245
[2025-06-04 14:05:02] 2025-06-04 11:45:35,714 | INFO     | -- intersect: -4640698945.114318
[2025-06-04 14:05:02] 2025-06-04 11:45:35,714 | INFO     | intersect: -4640698945.114318
[2025-06-04 14:05:02] 2025-06-04 11:45:35,714 | INFO     | chi2: 2.365826841057129
[2025-06-04 14:05:02] 2025-06-04 11:45:35,714 | INFO     | current chi2=2.365826841057129 (change=67.01694127193292 %)
[2025-06-04 14:05:02] 2025-06-04 11:45:35,715 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 14:05:02] 2025-06-04 11:45:35,717 | INFO     | sum of deviations: -30281708267.0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,717 | INFO     | mean x: 1749030698.5
[2025-06-04 14:05:02] 2025-06-04 11:45:35,717 | INFO     | mean y: 2503137.396396396
[2025-06-04 14:05:02] 2025-06-04 11:45:35,717 | INFO     | -- intersect: 15614169743.516026
[2025-06-04 14:05:02] 2025-06-04 11:45:35,717 | INFO     | intersect: 15614169743.516026
[2025-06-04 14:05:02] 2025-06-04 11:45:35,718 | INFO     | chi2: 0.9576288461181846
[2025-06-04 14:05:02] 2025-06-04 11:45:35,718 | INFO     | current chi2=0.9576288461181846 (change=59.52244562031071 %)
[2025-06-04 14:05:02] 2025-06-04 11:45:35,718 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,720 | INFO     | sum of deviations: -34703891433.0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,720 | INFO     | mean x: 1749030851.0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,720 | INFO     | mean y: 2506128.013824885
[2025-06-04 14:05:02] 2025-06-04 11:45:35,721 | INFO     | -- intersect: 19159494846.51111
[2025-06-04 14:05:02] 2025-06-04 11:45:35,721 | INFO     | intersect: 19159494846.51111
[2025-06-04 14:05:02] 2025-06-04 11:45:35,721 | INFO     | chi2: 0.9262551280681888
[2025-06-04 14:05:02] 2025-06-04 11:45:35,721 | INFO     | current chi2=0.9262551280681888 (change=3.276187656331713 %)
[2025-06-04 14:05:02] 2025-06-04 11:45:35,721 | INFO     | left removable region: 30
[2025-06-04 14:05:02] 2025-06-04 11:45:35,722 | INFO     | sum of square deviations: 2334722845.0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,723 | INFO     | sum of deviations: 1125400650.9999988
[2025-06-04 14:05:02] 2025-06-04 11:45:35,727 | INFO     | mean x: 1749031125.5
[2025-06-04 14:05:02] 2025-06-04 11:45:35,727 | INFO     | mean y: 2500010.2551020407
[2025-06-04 14:05:02] 2025-06-04 11:45:35,727 | INFO     | -- intersect: -840581116.685668
[2025-06-04 14:05:02] 2025-06-04 11:45:35,727 | INFO     | intersect: -840581116.685668
[2025-06-04 14:05:02] 2025-06-04 11:45:35,727 | INFO     | chi2: 0.03808207908261713
[2025-06-04 14:05:02] 2025-06-04 11:45:35,728 | INFO     | -- intersect: -840581116.685668
[2025-06-04 14:05:02] 2025-06-04 11:45:35,728 | INFO     | current memory leak: 0.48 B/s (using 196 data points, chi2=0.04)
[2025-06-04 14:05:02] 2025-06-04 11:45:35,728 | INFO     | ..............................
[2025-06-04 14:05:02] 2025-06-04 11:45:35,729 | INFO     | . Timing measurements:
[2025-06-04 14:05:02] 2025-06-04 11:45:35,729 | INFO     | . get job = 0 s
[2025-06-04 14:05:02] 2025-06-04 11:45:35,729 | INFO     | . initial setup = 9 s
[2025-06-04 14:05:02] 2025-06-04 11:45:35,729 | INFO     | . payload setup = 163 s
[2025-06-04 14:05:02] 2025-06-04 11:45:35,729 | INFO     | . stage-in = 0 s
[2025-06-04 14:05:02] 2025-06-04 11:45:35,729 | INFO     | . payload execution = 14248 s
[2025-06-04 14:05:02] 2025-06-04 11:45:35,729 | INFO     | . stage-out = 3 s
[2025-06-04 14:05:02] 2025-06-04 11:45:35,729 | INFO     | . log creation = 0 s
[2025-06-04 14:05:02] 2025-06-04 11:45:35,729 | INFO     | ..............................
[2025-06-04 14:05:02] 2025-06-04 11:45:35,867 | INFO     | 
[2025-06-04 14:05:02] 2025-06-04 11:45:35,867 | INFO     | job summary report
[2025-06-04 14:05:02] 2025-06-04 11:45:35,867 | INFO     | --------------------------------------------------
[2025-06-04 14:05:02] 2025-06-04 11:45:35,868 | INFO     | PanDA job id: 6678150155
[2025-06-04 14:05:02] 2025-06-04 11:45:35,868 | INFO     | task id: 45006595
[2025-06-04 14:05:02] 2025-06-04 11:45:35,868 | INFO     | errors: (none)
[2025-06-04 14:05:02] 2025-06-04 11:45:35,868 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 14:05:02] 2025-06-04 11:45:35,868 | INFO     | pilot state: finished 
[2025-06-04 14:05:02] 2025-06-04 11:45:35,868 | INFO     | transexitcode: 0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,868 | INFO     | exeerrorcode: 0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,868 | INFO     | exeerrordiag: 
[2025-06-04 14:05:02] 2025-06-04 11:45:35,868 | INFO     | exitcode: 0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,868 | INFO     | exitmsg: OK
[2025-06-04 14:05:02] 2025-06-04 11:45:35,868 | INFO     | cpuconsumptiontime: 52482 s
[2025-06-04 14:05:02] 2025-06-04 11:45:35,868 | INFO     | nevents: 400
[2025-06-04 14:05:02] 2025-06-04 11:45:35,869 | INFO     | neventsw: 0
[2025-06-04 14:05:02] 2025-06-04 11:45:35,869 | INFO     | pid: 14405
[2025-06-04 14:05:02] 2025-06-04 11:45:35,869 | INFO     | pgrp: 14405
[2025-06-04 14:05:02] 2025-06-04 11:45:35,869 | INFO     | corecount: 8
[2025-06-04 14:05:02] 2025-06-04 11:45:35,869 | INFO     | event service: False
[2025-06-04 14:05:02] 2025-06-04 11:45:35,869 | INFO     | sizes: {0: 2404356, 1: 2405042, 2: 2405241, 13: 2405241, 24: 2405297, 34: 2405325, 45: 2405481, 56: 2405509, 66: 2405537, 77: 2405565, 88: 2405621, 90: 2406135, 99
[2025-06-04 14:05:02] 2025-06-04 11:45:35,869 | INFO     | --------------------------------------------------
[2025-06-04 14:05:02] 2025-06-04 11:45:35,869 | INFO     | 
[2025-06-04 14:05:02] 2025-06-04 11:45:35,869 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-04 14:05:02] 2025-06-04 11:45:36,424 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,425 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,425 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,425 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,425 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,425 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,425 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,425 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,425 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,426 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,426 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,426 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,426 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,426 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,426 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,426 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,426 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,426 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 14:05:02] 2025-06-04 11:45:36,427 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,427 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 14:05:02] 2025-06-04 11:45:36,427 | INFO     | job 6678150155 has completed (purged errors)
[2025-06-04 14:05:02] 2025-06-04 11:45:36,427 | INFO     | overall cleanup function is called
[2025-06-04 14:05:02] 2025-06-04 11:45:37,444 | INFO     | --- collectZombieJob: --- 10, [14405]
[2025-06-04 14:05:02] 2025-06-04 11:45:37,445 | INFO     | zombie collector waiting for pid 14405
[2025-06-04 14:05:02] 2025-06-04 11:45:37,445 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 14:05:02] 2025-06-04 11:45:37,445 | INFO     | collected zombie processes
[2025-06-04 14:05:02] 2025-06-04 11:45:37,445 | INFO     | will attempt to kill all subprocesses of pid=14405
[2025-06-04 14:05:02] 2025-06-04 11:45:37,567 | INFO     | process IDs to be killed: [14405] (in reverse order)
[2025-06-04 14:05:02] 2025-06-04 11:45:38,432 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 14:05:02] 2025-06-04 11:45:38,433 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 14:05:02] 2025-06-04 11:45:38,436 | INFO     | did not find any defunct processes belonging to 14405
[2025-06-04 14:05:02] 2025-06-04 11:45:38,439 | INFO     | did not find any defunct processes belonging to 14405
[2025-06-04 14:05:02] 2025-06-04 11:45:38,440 | INFO     | ready for new job
[2025-06-04 14:05:02] 2025-06-04 11:45:38,440 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 14:05:02] 2025-06-04 11:45:38,442 | INFO     | **************************************
[2025-06-04 14:05:02] 2025-06-04 11:45:38,442 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 14:05:02] 2025-06-04 11:45:38,442 | INFO     | **************************************
[2025-06-04 14:05:02] 2025-06-04 11:45:38,442 | INFO     | 
[2025-06-04 14:05:02] 2025-06-04 11:45:38,443 | INFO     | pilot is running in a VM
[2025-06-04 14:05:02] 2025-06-04 11:45:38,443 | INFO     | architecture information:
[2025-06-04 14:05:02] 2025-06-04 11:45:38,445 | INFO     | executing command: cat /etc/os-release
[2025-06-04 14:05:02] 2025-06-04 11:45:38,686 | INFO     | cat /etc/os-release:
[2025-06-04 14:05:02] NAME="CentOS Linux"
[2025-06-04 14:05:02] VERSION="7 (Core)"
[2025-06-04 14:05:02] ID="centos"
[2025-06-04 14:05:02] ID_LIKE="rhel fedora"
[2025-06-04 14:05:02] VERSION_ID="7"
[2025-06-04 14:05:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 14:05:02] ANSI_COLOR="0;31"
[2025-06-04 14:05:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 14:05:02] HOME_URL="https://www.centos.org/"
[2025-06-04 14:05:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 14:05:02] 
[2025-06-04 14:05:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 14:05:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 14:05:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 14:05:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 14:05:02] 
[2025-06-04 14:05:02] 2025-06-04 11:45:38,687 | INFO     | **************************************
[2025-06-04 14:05:02] 2025-06-04 11:45:39,191 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-04 14:05:02] 2025-06-04 11:45:39,485 | INFO     | sufficient remaining disk space (496522756096 B)
[2025-06-04 14:05:02] 2025-06-04 11:45:39,486 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 14:05:02] 2025-06-04 11:45:39,486 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 14:05:02] 2025-06-04 11:45:39,486 | INFO     | update_server=False
[2025-06-04 14:05:02] 2025-06-04 11:45:39,486 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 14:05:02] 2025-06-04 11:45:39,486 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 14:05:02] 2025-06-04 11:45:39,487 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 14:05:02] 2025-06-04 11:45:39,487 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 14:05:02] 2025-06-04 11:45:39,487 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 14:05:02] 2025-06-04 11:45:39,765 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 14:05:02] 2025-06-04 11:45:39,980 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 14:05:02] 2025-06-04 11:45:39,981 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 14:05:02] 2025-06-04 11:45:39,981 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:05:02] 2025-06-04 11:45:39,981 | INFO     | will abort loop
[2025-06-04 14:05:02] 2025-06-04 11:45:40,338 | INFO     | all job control threads have been joined
[2025-06-04 14:05:02] 2025-06-04 11:45:40,483 | INFO     | all data control threads have been joined
[2025-06-04 14:05:02] 2025-06-04 11:45:40,492 | INFO     | [job] retrieve thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:40,600 | INFO     | [payload] failed_post thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:40,637 | INFO     | [job] validate thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:40,864 | INFO     | all payload control threads have been joined
[2025-06-04 14:05:02] 2025-06-04 11:45:40,882 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:05:02] 2025-06-04 11:45:40,970 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:40,987 | INFO     | [job] job monitor thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:41,089 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:41,223 | INFO     | [data] copytool_in thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:41,345 | INFO     | [job] control thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:41,490 | INFO     | [data] control thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:41,596 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:41,708 | INFO     | [payload] validate_post thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:41,719 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:41,772 | INFO     | [data] copytool_out thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:41,872 | INFO     | [payload] control thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:41,888 | INFO     | [job] queue monitor thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:42,440 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 14:05:02] 2025-06-04 11:45:46,450 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 14:05:02] 2025-06-04 11:45:47,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140205387691840)>', '<ExcThread(monitor, started 140204937553664)>']
[2025-06-04 14:05:02] 2025-06-04 11:45:47,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 14:05:02] 2025-06-04 11:45:47,535 | INFO     | [monitor] control thread has ended
[2025-06-04 14:05:02] 2025-06-04 11:45:52,072 | INFO     | all workflow threads have been joined
[2025-06-04 14:05:02] 2025-06-04 11:45:52,073 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 14:05:02] 2025-06-04 11:45:52,073 | INFO     | traces error code: 0
[2025-06-04 14:05:02] 2025-06-04 11:45:52,073 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 14:05:02] 2025-06-04 11:45:52,354 [wrapper] ==== pilot stdout END ====
[2025-06-04 14:05:02] 2025-06-04 11:45:52,436 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 14:05:02] 2025-06-04 11:45:52,527 [wrapper] pilotpid: 5771
[2025-06-04 14:05:02] 2025-06-04 11:45:52,619 [wrapper] Pilot exit status: 0
[2025-06-04 14:05:02] 2025-06-04 11:45:53,028 [wrapper] pandaids: 6678150155
[2025-06-04 14:05:02] 2025-06-04 11:45:54,049 [wrapper] cleanup supervisor_pilot 31066 5772
[2025-06-04 14:05:02] 2025-06-04 11:45:54,127 [wrapper] Test setup, not cleaning
[2025-06-04 14:05:02] 2025-06-04 11:45:54,234 [wrapper] apfmon messages muted
[2025-06-04 14:05:02] 2025-06-04 11:45:54,356 [wrapper] ==== wrapper stdout END ====
[2025-06-04 14:05:02] 2025-06-04 11:45:54,564 [wrapper] ==== wrapper stderr END ====
[2025-06-04 14:05:02]  *** Error codes and diagnostics ***
[2025-06-04 14:05:02]     "exeErrorCode": 0,
[2025-06-04 14:05:02]     "exeErrorDiag": "",
[2025-06-04 14:05:02]     "pilotErrorCode": 0,
[2025-06-04 14:05:02]     "pilotErrorDiag": "",
[2025-06-04 14:05:02]  *** Listing of results directory ***
[2025-06-04 14:05:02] total 398232
[2025-06-04 14:05:02] -rwx------. 1 boinc boinc     37140 Jun  3 23:57 runpilot2-wrapper.sh
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc      5111 Jun  3 23:57 queuedata.json
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc    495897 Jun  3 23:57 pilot3.tar.gz
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc       100 Jun  4 09:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 14:05:02] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 09:06 run_atlas
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc       105 Jun  4 09:06 job.xml
[2025-06-04 14:05:02] -rw-r--r--. 2 boinc boinc 214848769 Jun  4 09:06 EVNT.45006593._001869.pool.root.1
[2025-06-04 14:05:02] drwxrwx--x. 2 boinc boinc        68 Jun  4 09:06 shared
[2025-06-04 14:05:02] -rw-r--r--. 2 boinc boinc    508873 Jun  4 09:06 input.tar.gz
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc      6392 Jun  4 09:06 init_data.xml
[2025-06-04 14:05:02] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:06 start_atlas.sh
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc         0 Jun  4 09:06 boinc_lockfile
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc      2525 Jun  4 09:37 pandaJob.out
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc    986745 Jun  4 09:40 agis_schedconf.cvmfs.json
[2025-06-04 14:05:02] drwx------. 4 boinc boinc      4096 Jun  4 09:40 pilot3
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc 185817967 Jun  4 13:43 HITS.45006595._046654.pool.root.1
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc       531 Jun  4 13:43 boinc_task_state.xml
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc      1015 Jun  4 13:44 memory_monitor_summary.json
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc   1598969 Jun  4 13:44 agis_ddmendpoints.agis.ALL.json
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc    398433 Jun  4 13:44 log.45006595._046654.job.log.tgz.1
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc        95 Jun  4 13:45 pilot_heartbeat.json
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc      7687 Jun  4 13:45 heartbeat.json
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc      4726 Jun  4 13:45 pilotlog.txt
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc   1249563 Jun  4 13:45 log.45006595._046654.job.log.1
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc       357 Jun  4 13:45 output.list
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc       620 Jun  4 13:45 runtime_log
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc   1669120 Jun  4 13:45 result.tar.gz
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc      8673 Jun  4 13:45 runtime_log.err
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc       657 Jun  4 13:45 j7NKDmFoog7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfJmKDm6qyacn.diag
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc      8192 Jun  4 14:05 boinc_mmap_file
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc        28 Jun  4 14:05 wrapper_checkpoint.txt
[2025-06-04 14:05:02] -rw-r--r--. 1 boinc boinc     20529 Jun  4 14:05 stderr.txt
[2025-06-04 14:05:02] HITS file was successfully produced:
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc 185817967 Jun  4 13:43 shared/HITS.pool.root.1
[2025-06-04 14:05:02]  *** Contents of shared directory: ***
[2025-06-04 14:05:02] total 393428
[2025-06-04 14:05:02] -rw-r--r--. 2 boinc boinc 214848769 Jun  4 09:06 ATLAS.root_0
[2025-06-04 14:05:02] -rw-r--r--. 2 boinc boinc    508873 Jun  4 09:06 input.tar.gz
[2025-06-04 14:05:02] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:06 start_atlas.sh
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc 185817967 Jun  4 13:43 HITS.pool.root.1
[2025-06-04 14:05:02] -rw-------. 1 boinc boinc   1669120 Jun  4 13:45 result.tar.gz
14:05:04 (11977): run_atlas exited; CPU time 52689.869449
14:05:04 (11977): called boinc_finish(0)

</stderr_txt>
]]>

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