Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-06 08:39:25 (12040): Detected: vboxwrapper 26206
2025-06-06 08:39:25 (12040): Detected: BOINC client v8.2.1
2025-06-06 08:39:26 (12040): Detected: VirtualBox VboxManage Interface (Version: 7.0.4)
2025-06-06 08:39:26 (12040): Successfully copied 'init_data.xml' to the shared directory.
2025-06-06 08:39:27 (12040): Create VM. (boinc_733a61c069da0e84, slot#4)
2025-06-06 08:39:28 (12040): Setting Memory Size for VM. (4000MB)
2025-06-06 08:39:28 (12040): Setting CPU Count for VM. (7)
2025-06-06 08:39:29 (12040): Setting Chipset Options for VM.
2025-06-06 08:39:29 (12040): Setting Graphics Controller Options for VM.
2025-06-06 08:39:29 (12040): Setting Boot Options for VM.
2025-06-06 08:39:30 (12040): Setting Network Configuration for NAT.
2025-06-06 08:39:30 (12040): Enabling VM Network Access.
2025-06-06 08:39:30 (12040): Disabling USB Support for VM.
2025-06-06 08:39:31 (12040): Disabling COM Port Support for VM.
2025-06-06 08:39:31 (12040): Disabling LPT Port Support for VM.
2025-06-06 08:39:32 (12040): Disabling Audio Support for VM.
2025-06-06 08:39:32 (12040): Disabling Clipboard Support for VM.
2025-06-06 08:39:32 (12040): Disabling Drag and Drop Support for VM.
2025-06-06 08:39:33 (12040): Adding storage controller(s) to VM.
2025-06-06 08:39:33 (12040): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-06 08:39:34 (12040): Adding VirtualBox Guest Additions to VM.
2025-06-06 08:39:34 (12040): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-06 08:39:34 (12040): forwarding host port 62287 to guest port 80
2025-06-06 08:39:35 (12040): Enabling remote desktop for VM.
2025-06-06 08:39:35 (12040): Enabling shared directory for VM.
2025-06-06 08:39:37 (12040): Starting VM using VBoxManage interface. (boinc_733a61c069da0e84, slot#4)
2025-06-06 08:39:55 (12040): Successfully started VM. (PID = '16080')
2025-06-06 08:39:55 (12040): Reporting VM Process ID to BOINC.
2025-06-06 08:39:55 (12040): Guest Log: BIOS: VirtualBox 7.0.4
2025-06-06 08:39:55 (12040): Guest Log: CPUID EDX: 0x178bfbff
2025-06-06 08:39:55 (12040): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-06 08:39:55 (12040): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-06 08:39:55 (12040): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-06 08:39:55 (12040): Detected: Web Application Enabled (http://localhost:62287)
2025-06-06 08:39:55 (12040): Detected: Remote Desktop Enabled (localhost:62288)
2025-06-06 08:39:55 (12040): Preference change detected
2025-06-06 08:39:55 (12040): Setting CPU throttle for VM. (100%)
2025-06-06 08:39:55 (12040): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 30 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-06 08:39:57 (12040): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-06 08:39:57 (12040): Guest Log: BIOS: Booting from Hard Disk...
2025-06-06 08:40:00 (12040): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-06 08:40:00 (12040): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-06 08:40:00 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-06 08:40:01 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-06 08:40:01 (12040): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-06 08:40:01 (12040): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-06 08:40:09 (12040): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-06 08:40:09 (12040): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-06 08:40:21 (12040): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-06 08:40:21 (12040): Guest Log: 00:00:00.000389 main     Log opened 2025-06-06T08:40:19.776305000Z
2025-06-06 08:40:21 (12040): Guest Log: 00:00:00.000667 main     OS Product: Linux
2025-06-06 08:40:21 (12040): Guest Log: 00:00:00.000751 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-06 08:40:21 (12040): Guest Log: 00:00:00.000829 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-06 08:40:21 (12040): Guest Log: 00:00:00.000924 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-06 08:40:21 (12040): Guest Log: 00:00:00.000926 main     Process ID: 1330
2025-06-06 08:40:21 (12040): Guest Log: 00:00:00.000927 main     Package type: LINUX_64BITS_GENERIC
2025-06-06 08:40:21 (12040): Guest Log: 00:00:00.003716 main     5.2.32 r132073 started. Verbose level = 0
2025-06-06 08:40:21 (12040): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-06 08:40:21 (12040): Guest Log: [INFO] Mounting shared directory
2025-06-06 08:40:22 (12040): Guest Log: [INFO] Checking for init_data.xml
2025-06-06 08:40:27 (12040): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-06 08:40:27 (12040): Guest Log: [INFO] Detected branch: prod
2025-06-06 08:40:28 (12040): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-06 08:40:28 (12040): Guest Log: Copying input files
2025-06-06 08:40:31 (12040): Guest Log: 00:00:10.009128 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 195 599 000ns (GuestNow=1 749 195 631 588 654 000 ns GuestLast=1 749 199 219 784 253 000 ns fSetTimeLastLoop=true )
2025-06-06 08:40:32 (12040): Guest Log: Copied input files into RunAtlas.
2025-06-06 08:40:32 (12040): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-06 08:40:32 (12040): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-06 08:40:32 (12040): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-06 08:40:32 (12040): Guest Log: Further information can be found at the LHC@home message board.
2025-06-06 08:40:42 (12040): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-06 08:40:43 (12040): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-06 08:40:43 (12040): Guest Log: 2.6.3.0 1608 0 30192 146847 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-06 08:40:45 (12040): Guest Log: copied the webapp to /var/www
2025-06-06 08:40:45 (12040): Guest Log: ATHENA_PROC_NUMBER=7
2025-06-06 08:40:45 (12040): Guest Log: ATHENA_CORE_NUMBER=7
2025-06-06 08:40:45 (12040): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-06 08:40:45 (12040): Guest Log:  *** Starting ATLAS job. (PandaID=6677783125 taskID=45006595) ***
2025-06-06 10:20:10 (12040): Status Report: Elapsed Time: '6000.000000'
2025-06-06 10:20:10 (12040): Status Report: CPU Time: '30983.703125'
2025-06-06 11:30:23 (12040): VM state change detected. (old = 'running', new = 'paused')
2025-06-06 11:35:25 (12040): VM state change detected. (old = 'paused', new = 'running')
2025-06-06 12:05:23 (12040): Status Report: Elapsed Time: '12000.000000'
2025-06-06 12:05:23 (12040): Status Report: CPU Time: '61517.515625'
2025-06-06 13:45:33 (12040): Status Report: Elapsed Time: '18000.000000'
2025-06-06 13:45:33 (12040): Status Report: CPU Time: '92986.171875'
2025-06-06 15:25:43 (12040): Status Report: Elapsed Time: '24000.000000'
2025-06-06 15:25:43 (12040): Status Report: CPU Time: '123994.109375'
2025-06-06 16:03:45 (12040): Guest Log:  *** Job finished ***
2025-06-06 16:03:45 (12040): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:37,342 | INFO     | [data] copytool_out thread has finished
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:37,673 | INFO     | [job] queue monitor thread has finished
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:40,036 | INFO     | [data] queue_monitor thread has finished
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:41,161 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140127672514368)>', '<ExcThread(monitor, started 140126730581760)>']
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:41,425 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:41,425 | INFO     | [monitor] control thread has ended
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:46,239 | INFO     | all workflow threads have been joined
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:46,240 | INFO     | end of generic workflow (traces error code: 0)
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:46,242 | INFO     | traces error code: 0
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:46,243 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:46,789 [wrapper] ==== pilot stdout END ====
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:46,860 [wrapper] ==== wrapper stdout RESUME ====
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:46,913 [wrapper] pilotpid: 5959
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:46,953 [wrapper] Pilot exit status: 0
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:47,226 [wrapper] pandaids: 6677783125
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:47,539 [wrapper] cleanup supervisor_pilot   826 5960
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:47,615 [wrapper] Test setup, not cleaning
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:47,650 [wrapper] apfmon messages muted
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:47,686 [wrapper] ==== wrapper stdout END ====
2025-06-06 16:03:45 (12040): Guest Log: 2025-06-06 14:58:47,738 [wrapper] ==== wrapper stderr END ====
2025-06-06 16:03:45 (12040): Guest Log:  *** Error codes and diagnostics ***
2025-06-06 16:03:45 (12040): Guest Log:     "exeErrorCode": 0,
2025-06-06 16:03:45 (12040): Guest Log:     "exeErrorDiag": "",
2025-06-06 16:03:45 (12040): Guest Log:     "pilotErrorCode": 0,
2025-06-06 16:03:45 (12040): Guest Log:     "pilotErrorDiag": "",
2025-06-06 16:03:45 (12040): Guest Log:  *** Listing of results directory ***
2025-06-06 16:03:45 (12040): Guest Log: total 181088
2025-06-06 16:03:45 (12040): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 16:42 runpilot2-wrapper.sh
2025-06-06 16:03:45 (12040): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 16:42 queuedata.json
2025-06-06 16:03:45 (12040): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 16:42 pilot3.tar.gz
2025-06-06 16:03:45 (12040): Guest Log: -rwxr-xr-x. 1 atlas atlas      6281 Jun  6 07:40 init_data.xml
2025-06-06 16:03:45 (12040): Guest Log: -rwxr-xr-x. 1 atlas atlas    508876 Jun  6 07:40 input.tar.gz
2025-06-06 16:03:45 (12040): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  6 07:40 start_atlas.sh
2025-06-06 16:03:45 (12040): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  6 07:40 EVNT.45006593._001568.pool.root.1 -> /data/./ATLAS.root_0
2025-06-06 16:03:45 (12040): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  6 07:40 pandaJob.out
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas    987967 Jun  6 07:42 agis_schedconf.cvmfs.json
2025-06-06 16:03:45 (12040): Guest Log: drwx------. 4 atlas atlas      4096 Jun  6 07:42 pilot3
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas 176851913 Jun  6 14:56 HITS.45006595._039089.pool.root.1
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas      1040 Jun  6 14:57 memory_monitor_summary.json
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  6 14:57 agis_ddmendpoints.agis.ALL.json
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas    454357 Jun  6 14:57 log.45006595._039089.job.log.tgz.1
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas        95 Jun  6 14:58 pilot_heartbeat.json
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas      7756 Jun  6 14:58 heartbeat.json
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  6 14:58 pilotlog.txt
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas   1957811 Jun  6 14:58 log.45006595._039089.job.log.1
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas       357 Jun  6 14:58 output.list
2025-06-06 16:03:45 (12040): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  6 14:58 runtime_log
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas   2426880 Jun  6 14:58 result.tar.gz
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas       659 Jun  6 14:58 U63NDmUtjg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmoIZKDm1ijCSo.diag
2025-06-06 16:03:45 (12040): Guest Log: -rw-r--r--. 1 atlas atlas      8593 Jun  6 14:58 runtime_log.err
2025-06-06 16:03:45 (12040): Guest Log: Looking for outputfile HITS.45006595._039089.pool.root.1
2025-06-06 16:03:45 (12040): Guest Log: HITS file was successfully produced
2025-06-06 16:03:45 (12040): Guest Log: -rw-------. 1 atlas atlas 176851913 Jun  6 14:56 /home/atlas/RunAtlas/HITS.45006595._039089.pool.root.1
2025-06-06 16:03:52 (12040): Guest Log: Successfully finished the ATLAS job!
2025-06-06 16:03:52 (12040): Guest Log: Copying the results back to the shared directory!
2025-06-06 16:03:53 (12040): Guest Log:  *** Contents of shared directory: ***
2025-06-06 16:03:53 (12040): Guest Log: total 384300
2025-06-06 16:03:53 (12040): Guest Log: -rwxrwxrwx. 1 root root 213703517 Jun  6 07:39 ATLAS.root_0
2025-06-06 16:03:53 (12040): Guest Log: -rwxrwxrwx. 1 root root 176851913 Jun  6  2025 HITS.pool.root.1
2025-06-06 16:03:53 (12040): Guest Log: -rwxrwxrwx. 1 root root      6281 Jun  6 07:39 init_data.xml
2025-06-06 16:03:53 (12040): Guest Log: -rwxrwxrwx. 1 root root    508876 Jun  3 23:42 input.tar.gz
2025-06-06 16:03:53 (12040): Guest Log: -rwxrwxrwx. 1 root root   2426880 Jun  6  2025 result.tar.gz
2025-06-06 16:03:53 (12040): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 23:42 start_atlas.sh
2025-06-06 16:03:53 (12040): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-06 16:03:53 (12040): VM Completion File Detected.
2025-06-06 16:03:53 (12040): Powering off VM.
2025-06-06 16:03:54 (12040): Successfully stopped VM.
2025-06-06 16:03:54 (12040): Deregistering VM. (boinc_733a61c069da0e84, slot#4)
2025-06-06 16:03:54 (12040): Removing network bandwidth throttle group from VM.
2025-06-06 16:03:54 (12040): Removing VM from VirtualBox.
16:04:00 (12040): called boinc_finish(0)

</stderr_txt>
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