Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:02:19 (6646): wrapper (7.7.26015): starting
10:02:19 (6646): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 10:02:19] Arguments: --nthreads 8
[2025-06-04 10:02:19] Threads: 8
[2025-06-04 10:02:19] Checking for CVMFS
[2025-06-04 10:02:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:02:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:02:20] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:02:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:02:21] 2.11.2.0 2200 32939 91976 146772 0 257 15977067 25165824 2745 130560 0 17557291 99.751 21185512 2205 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 10:02:21] CVMFS is ok
[2025-06-04 10:02:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:02:21] Checking for apptainer binary...
[2025-06-04 10:02:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:02:21] Running /usr/bin/apptainer --version
[2025-06-04 10:02:21] apptainer version 1.3.2-1.el7
[2025-06-04 10:02:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:04:05] cg-vwn296.simple-grid.lan
[2025-06-04 10:04:05] apptainer works
[2025-06-04 10:04:05] Set ATHENA_PROC_NUMBER=8
[2025-06-04 10:04:05] Set ATHENA_CORE_NUMBER=8
[2025-06-04 10:04:05] Starting ATLAS job with PandaID=6677978533
[2025-06-04 10:04:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/28 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 15:43:50]  *** The last 200 lines of the pilot log: ***
[2025-06-04 15:43:50] 2025-06-04 11:56:46,340 | INFO     | extracted standard info from prmon json
[2025-06-04 15:43:50] 2025-06-04 11:56:46,340 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 15:43:50] 2025-06-04 11:56:46,340 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 15:43:50] 2025-06-04 11:56:46,340 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 15:43:50] 2025-06-04 11:56:46,341 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 15:43:50] 2025-06-04 11:56:46,345 | INFO     | fitting pss+swap vs Time
[2025-06-04 15:43:50] 2025-06-04 11:56:46,346 | INFO     | sum of square deviations: 3124858590.0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,348 | INFO     | sum of deviations: 87239071432.00002
[2025-06-04 15:43:50] 2025-06-04 11:56:46,348 | INFO     | mean x: 1749031510.5
[2025-06-04 15:43:50] 2025-06-04 11:56:46,348 | INFO     | mean y: 2412838.2685185187
[2025-06-04 15:43:50] 2025-06-04 11:56:46,348 | INFO     | -- intersect: -48826639896.9877
[2025-06-04 15:43:50] 2025-06-04 11:56:46,349 | INFO     | intersect: -48826639896.9877
[2025-06-04 15:43:50] 2025-06-04 11:56:46,349 | INFO     | chi2: 6.780908076805893
[2025-06-04 15:43:50] 2025-06-04 11:56:46,349 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,351 | INFO     | sum of deviations: 99272584680.99998
[2025-06-04 15:43:50] 2025-06-04 11:56:46,351 | INFO     | mean x: 1749031358.0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,352 | INFO     | mean y: 2421301.298578199
[2025-06-04 15:43:50] 2025-06-04 11:56:46,352 | INFO     | -- intersect: -59606448885.93157
[2025-06-04 15:43:50] 2025-06-04 11:56:46,352 | INFO     | intersect: -59606448885.93157
[2025-06-04 15:43:50] 2025-06-04 11:56:46,352 | INFO     | chi2: 6.0655885424214535
[2025-06-04 15:43:50] 2025-06-04 11:56:46,352 | INFO     | current chi2=6.0655885424214535 (change=10.549022730911092 %)
[2025-06-04 15:43:50] 2025-06-04 11:56:46,352 | INFO     | right removable region: 210
[2025-06-04 15:43:50] 2025-06-04 11:56:46,353 | INFO     | sum of square deviations: 2912836010.0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,355 | INFO     | sum of deviations: 13579789683.000021
[2025-06-04 15:43:50] 2025-06-04 11:56:46,355 | INFO     | mean x: 1749031663.0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,355 | INFO     | mean y: 2465770.0947867297
[2025-06-04 15:43:50] 2025-06-04 11:56:46,355 | INFO     | -- intersect: -8151608833.1122
[2025-06-04 15:43:50] 2025-06-04 11:56:46,355 | INFO     | intersect: -8151608833.1122
[2025-06-04 15:43:50] 2025-06-04 11:56:46,355 | INFO     | chi2: 2.003455535153048
[2025-06-04 15:43:50] 2025-06-04 11:56:46,356 | INFO     | current chi2=2.003455535153048 (change=70.45446550137038 %)
[2025-06-04 15:43:50] 2025-06-04 11:56:46,356 | INFO     | sum of square deviations: 2710627567.5
[2025-06-04 15:43:50] 2025-06-04 11:56:46,358 | INFO     | sum of deviations: -20092818121.0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,358 | INFO     | mean x: 1749031815.5
[2025-06-04 15:43:50] 2025-06-04 11:56:46,358 | INFO     | mean y: 2491003.4077669904
[2025-06-04 15:43:50] 2025-06-04 11:56:46,358 | INFO     | -- intersect: 12967377282.15839
[2025-06-04 15:43:50] 2025-06-04 11:56:46,359 | INFO     | intersect: 12967377282.15839
[2025-06-04 15:43:50] 2025-06-04 11:56:46,359 | INFO     | chi2: 0.8455720693173143
[2025-06-04 15:43:50] 2025-06-04 11:56:46,359 | INFO     | current chi2=0.8455720693173143 (change=57.79431814279226 %)
[2025-06-04 15:43:50] 2025-06-04 11:56:46,360 | INFO     | sum of square deviations: 2518000700.0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,361 | INFO     | sum of deviations: -23862220889.0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,361 | INFO     | mean x: 1749031968.0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,362 | INFO     | mean y: 2493943.5074626864
[2025-06-04 15:43:50] 2025-06-04 11:56:46,362 | INFO     | -- intersect: 16577464380.306145
[2025-06-04 15:43:50] 2025-06-04 11:56:46,362 | INFO     | intersect: 16577464380.306145
[2025-06-04 15:43:50] 2025-06-04 11:56:46,362 | INFO     | chi2: 0.8109308065345653
[2025-06-04 15:43:50] 2025-06-04 11:56:46,362 | INFO     | current chi2=0.8109308065345653 (change=4.096784181946454 %)
[2025-06-04 15:43:50] 2025-06-04 11:56:46,362 | INFO     | left removable region: 30
[2025-06-04 15:43:50] 2025-06-04 11:56:46,363 | INFO     | sum of square deviations: 1808350185.0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,364 | INFO     | sum of deviations: -7315395598.0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,364 | INFO     | mean x: 1749032242.5
[2025-06-04 15:43:50] 2025-06-04 11:56:46,364 | INFO     | mean y: 2502512.677777778
[2025-06-04 15:43:50] 2025-06-04 11:56:46,364 | INFO     | -- intersect: 7077936725.407194
[2025-06-04 15:43:50] 2025-06-04 11:56:46,365 | INFO     | intersect: 7077936725.407194
[2025-06-04 15:43:50] 2025-06-04 11:56:46,365 | INFO     | chi2: 0.016652816132773675
[2025-06-04 15:43:50] 2025-06-04 11:56:46,365 | INFO     | -- intersect: 7077936725.407194
[2025-06-04 15:43:50] 2025-06-04 11:56:46,365 | INFO     | current memory leak: -4.05 B/s (using 180 data points, chi2=0.02)
[2025-06-04 15:43:50] 2025-06-04 11:56:46,366 | INFO     | ..............................
[2025-06-04 15:43:50] 2025-06-04 11:56:46,366 | INFO     | . Timing measurements:
[2025-06-04 15:43:50] 2025-06-04 11:56:46,366 | INFO     | . get job = 0 s
[2025-06-04 15:43:50] 2025-06-04 11:56:46,366 | INFO     | . initial setup = 5 s
[2025-06-04 15:43:50] 2025-06-04 11:56:46,367 | INFO     | . payload setup = 170 s
[2025-06-04 15:43:50] 2025-06-04 11:56:46,367 | INFO     | . stage-in = 0 s
[2025-06-04 15:43:50] 2025-06-04 11:56:46,367 | INFO     | . payload execution = 13302 s
[2025-06-04 15:43:50] 2025-06-04 11:56:46,367 | INFO     | . stage-out = 3 s
[2025-06-04 15:43:50] 2025-06-04 11:56:46,367 | INFO     | . log creation = 1 s
[2025-06-04 15:43:50] 2025-06-04 11:56:46,367 | INFO     | ..............................
[2025-06-04 15:43:50] 2025-06-04 11:56:46,789 | INFO     | 
[2025-06-04 15:43:50] 2025-06-04 11:56:46,790 | INFO     | job summary report
[2025-06-04 15:43:50] 2025-06-04 11:56:46,790 | INFO     | --------------------------------------------------
[2025-06-04 15:43:50] 2025-06-04 11:56:46,790 | INFO     | PanDA job id: 6677978533
[2025-06-04 15:43:50] 2025-06-04 11:56:46,790 | INFO     | task id: 45006595
[2025-06-04 15:43:50] 2025-06-04 11:56:46,790 | INFO     | errors: (none)
[2025-06-04 15:43:50] 2025-06-04 11:56:46,790 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 15:43:50] 2025-06-04 11:56:46,790 | INFO     | pilot state: finished 
[2025-06-04 15:43:50] 2025-06-04 11:56:46,790 | INFO     | transexitcode: 0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,791 | INFO     | exeerrorcode: 0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,791 | INFO     | exeerrordiag: 
[2025-06-04 15:43:50] 2025-06-04 11:56:46,791 | INFO     | exitcode: 0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,791 | INFO     | exitmsg: OK
[2025-06-04 15:43:50] 2025-06-04 11:56:46,791 | INFO     | cpuconsumptiontime: 48852 s
[2025-06-04 15:43:50] 2025-06-04 11:56:46,791 | INFO     | nevents: 400
[2025-06-04 15:43:50] 2025-06-04 11:56:46,791 | INFO     | neventsw: 0
[2025-06-04 15:43:50] 2025-06-04 11:56:46,791 | INFO     | pid: 21008
[2025-06-04 15:43:50] 2025-06-04 11:56:46,791 | INFO     | pgrp: 21008
[2025-06-04 15:43:50] 2025-06-04 11:56:46,791 | INFO     | corecount: 8
[2025-06-04 15:43:50] 2025-06-04 11:56:46,791 | INFO     | event service: False
[2025-06-04 15:43:50] 2025-06-04 11:56:46,792 | INFO     | sizes: {0: 2404354, 1: 2405040, 2: 2405239, 12: 2405239, 23: 2405267, 34: 2405295, 45: 2405451, 55: 2405479, 66: 2405507, 77: 2405535, 88: 2405591, 91: 2406105, 98
[2025-06-04 15:43:50] 2025-06-04 11:56:46,792 | INFO     | --------------------------------------------------
[2025-06-04 15:43:50] 2025-06-04 11:56:46,792 | INFO     | 
[2025-06-04 15:43:50] 2025-06-04 11:56:46,792 | INFO     | executing command: ls -lF /var/lib/boinc/slots/28
[2025-06-04 15:43:50] 2025-06-04 11:56:47,354 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,354 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,354 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,354 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,355 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,355 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,355 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,355 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,355 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,355 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,355 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,355 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,355 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,355 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,355 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,355 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,356 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,356 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 15:43:50] 2025-06-04 11:56:47,356 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,356 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 15:43:50] 2025-06-04 11:56:47,356 | INFO     | job 6677978533 has completed (purged errors)
[2025-06-04 15:43:50] 2025-06-04 11:56:47,356 | INFO     | overall cleanup function is called
[2025-06-04 15:43:50] 2025-06-04 11:56:48,364 | INFO     | --- collectZombieJob: --- 10, [21008]
[2025-06-04 15:43:50] 2025-06-04 11:56:48,365 | INFO     | zombie collector waiting for pid 21008
[2025-06-04 15:43:50] 2025-06-04 11:56:48,365 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 15:43:50] 2025-06-04 11:56:48,365 | INFO     | collected zombie processes
[2025-06-04 15:43:50] 2025-06-04 11:56:48,365 | INFO     | will attempt to kill all subprocesses of pid=21008
[2025-06-04 15:43:50] 2025-06-04 11:56:48,483 | INFO     | process IDs to be killed: [21008] (in reverse order)
[2025-06-04 15:43:50] 2025-06-04 11:56:49,271 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 15:43:50] 2025-06-04 11:56:49,272 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 15:43:50] 2025-06-04 11:56:49,275 | INFO     | did not find any defunct processes belonging to 21008
[2025-06-04 15:43:50] 2025-06-04 11:56:49,278 | INFO     | did not find any defunct processes belonging to 21008
[2025-06-04 15:43:50] 2025-06-04 11:56:49,278 | INFO     | ready for new job
[2025-06-04 15:43:50] 2025-06-04 11:56:49,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 15:43:50] 2025-06-04 11:56:49,280 | INFO     | **************************************
[2025-06-04 15:43:50] 2025-06-04 11:56:49,280 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 15:43:50] 2025-06-04 11:56:49,286 | INFO     | **************************************
[2025-06-04 15:43:50] 2025-06-04 11:56:49,287 | INFO     | 
[2025-06-04 15:43:50] 2025-06-04 11:56:49,287 | INFO     | pilot is running in a VM
[2025-06-04 15:43:50] 2025-06-04 11:56:49,287 | INFO     | architecture information:
[2025-06-04 15:43:50] 2025-06-04 11:56:49,304 | INFO     | executing command: cat /etc/os-release
[2025-06-04 15:43:50] 2025-06-04 11:56:49,466 | INFO     | cat /etc/os-release:
[2025-06-04 15:43:50] NAME="CentOS Linux"
[2025-06-04 15:43:50] VERSION="7 (Core)"
[2025-06-04 15:43:50] ID="centos"
[2025-06-04 15:43:50] ID_LIKE="rhel fedora"
[2025-06-04 15:43:50] VERSION_ID="7"
[2025-06-04 15:43:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 15:43:50] ANSI_COLOR="0;31"
[2025-06-04 15:43:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 15:43:50] HOME_URL="https://www.centos.org/"
[2025-06-04 15:43:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 15:43:50] 
[2025-06-04 15:43:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 15:43:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 15:43:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 15:43:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 15:43:50] 
[2025-06-04 15:43:50] 2025-06-04 11:56:49,466 | INFO     | **************************************
[2025-06-04 15:43:50] 2025-06-04 11:56:49,970 | INFO     | executing command: df -mP /var/lib/boinc/slots/28
[2025-06-04 15:43:50] 2025-06-04 11:56:50,150 | INFO     | sufficient remaining disk space (497270390784 B)
[2025-06-04 15:43:50] 2025-06-04 11:56:50,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 15:43:50] 2025-06-04 11:56:50,151 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 15:43:50] 2025-06-04 11:56:50,151 | INFO     | update_server=False
[2025-06-04 15:43:50] 2025-06-04 11:56:50,151 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 15:43:50] 2025-06-04 11:56:50,151 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 15:43:50] 2025-06-04 11:56:50,152 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 15:43:50] 2025-06-04 11:56:50,152 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 15:43:50] 2025-06-04 11:56:50,152 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 15:43:50] 2025-06-04 11:56:50,152 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:43:50] 2025-06-04 11:56:50,153 | INFO     | aborting loop
[2025-06-04 15:43:50] 2025-06-04 11:56:50,213 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 15:43:50] 2025-06-04 11:56:50,250 | INFO     | all data control threads have been joined
[2025-06-04 15:43:50] 2025-06-04 11:56:50,331 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 15:43:50] 2025-06-04 11:56:50,682 | INFO     | all payload control threads have been joined
[2025-06-04 15:43:50] 2025-06-04 11:56:51,157 | INFO     | [job] retrieve thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:51,159 | INFO     | [job] job monitor thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:51,252 | INFO     | [data] copytool_in thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:51,257 | INFO     | [data] control thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:51,500 | INFO     | all job control threads have been joined
[2025-06-04 15:43:50] 2025-06-04 11:56:51,550 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:43:50] 2025-06-04 11:56:51,647 | INFO     | [job] validate thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:51,689 | INFO     | [payload] control thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:52,277 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:52,339 | INFO     | [data] copytool_out thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:52,343 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:52,507 | INFO     | [job] control thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:52,557 | INFO     | [job] queue monitor thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:52,581 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:52,584 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:52,597 | INFO     | [payload] failed_post thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:52,756 | INFO     | [payload] validate_post thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:54,222 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 15:43:50] 2025-06-04 11:56:54,856 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140165019551552)>', '<ExcThread(monitor, started 140164437370624)>']
[2025-06-04 15:43:50] 2025-06-04 11:56:55,182 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 15:43:50] 2025-06-04 11:56:55,183 | INFO     | [monitor] control thread has ended
[2025-06-04 15:43:50] 2025-06-04 11:56:59,881 | INFO     | all workflow threads have been joined
[2025-06-04 15:43:50] 2025-06-04 11:56:59,882 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 15:43:50] 2025-06-04 11:56:59,882 | INFO     | traces error code: 0
[2025-06-04 15:43:50] 2025-06-04 11:56:59,882 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 15:43:50] 2025-06-04 11:57:00,203 [wrapper] ==== pilot stdout END ====
[2025-06-04 15:43:50] 2025-06-04 11:57:00,263 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 15:43:50] 2025-06-04 11:57:00,354 [wrapper] pilotpid: 12350
[2025-06-04 15:43:50] 2025-06-04 11:57:00,445 [wrapper] Pilot exit status: 0
[2025-06-04 15:43:50] 2025-06-04 11:57:00,999 [wrapper] pandaids: 6677978533
[2025-06-04 15:43:50] 2025-06-04 11:57:01,778 [wrapper] cleanup supervisor_pilot 16679 12351
[2025-06-04 15:43:50] 2025-06-04 11:57:01,828 [wrapper] Test setup, not cleaning
[2025-06-04 15:43:50] 2025-06-04 11:57:01,916 [wrapper] apfmon messages muted
[2025-06-04 15:43:50] 2025-06-04 11:57:02,013 [wrapper] ==== wrapper stdout END ====
[2025-06-04 15:43:50] 2025-06-04 11:57:02,065 [wrapper] ==== wrapper stderr END ====
[2025-06-04 15:43:50]  *** Error codes and diagnostics ***
[2025-06-04 15:43:50]     "exeErrorCode": 0,
[2025-06-04 15:43:50]     "exeErrorDiag": "",
[2025-06-04 15:43:50]     "pilotErrorCode": 0,
[2025-06-04 15:43:50]     "pilotErrorDiag": "",
[2025-06-04 15:43:50]  *** Listing of results directory ***
[2025-06-04 15:43:50] total 388352
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc    495897 Jun  3 21:41 pilot3.tar.gz
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc      5111 Jun  3 21:43 queuedata.json
[2025-06-04 15:43:50] -rwx------. 1 boinc boinc     37140 Jun  3 21:44 runpilot2-wrapper.sh
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc       100 Jun  4 10:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 15:43:50] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 10:02 run_atlas
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc       105 Jun  4 10:02 job.xml
[2025-06-04 15:43:50] -rw-r--r--. 2 boinc boinc 215677782 Jun  4 10:02 EVNT.45006593._001763.pool.root.1
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc      6392 Jun  4 10:02 init_data.xml
[2025-06-04 15:43:50] -rw-r--r--. 2 boinc boinc     15093 Jun  4 10:02 start_atlas.sh
[2025-06-04 15:43:50] drwxrwx--x. 2 boinc boinc        68 Jun  4 10:02 shared
[2025-06-04 15:43:50] -rw-r--r--. 2 boinc boinc    508876 Jun  4 10:02 input.tar.gz
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc         0 Jun  4 10:02 boinc_lockfile
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc      2524 Jun  4 10:04 pandaJob.out
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc    986745 Jun  4 10:07 agis_schedconf.cvmfs.json
[2025-06-04 15:43:50] drwx------. 4 boinc boinc      4096 Jun  4 10:07 pilot3
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc 175086739 Jun  4 13:54 HITS.45006595._043974.pool.root.1
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc       531 Jun  4 13:54 boinc_task_state.xml
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc      1017 Jun  4 13:55 memory_monitor_summary.json
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc   1598969 Jun  4 13:55 agis_ddmendpoints.agis.ALL.json
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc    368053 Jun  4 13:55 log.45006595._043974.job.log.tgz.1
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc        95 Jun  4 13:55 pilot_heartbeat.json
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc      7690 Jun  4 13:56 heartbeat.json
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc      4540 Jun  4 13:56 pilotlog.txt
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc   1176420 Jun  4 13:57 log.45006595._043974.job.log.1
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc       357 Jun  4 13:57 output.list
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc       620 Jun  4 13:57 runtime_log
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc   1566720 Jun  4 13:57 result.tar.gz
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc      8673 Jun  4 13:57 runtime_log.err
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc       657 Jun  4 13:57 34XLDmNkmg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfvlKDmhzTI1m.diag
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc        28 Jun  4 15:43 wrapper_checkpoint.txt
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc      8192 Jun  4 15:43 boinc_mmap_file
[2025-06-04 15:43:50] -rw-r--r--. 1 boinc boinc     20501 Jun  4 15:43 stderr.txt
[2025-06-04 15:43:50] HITS file was successfully produced:
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc 175086739 Jun  4 13:54 shared/HITS.pool.root.1
[2025-06-04 15:43:50]  *** Contents of shared directory: ***
[2025-06-04 15:43:50] total 383656
[2025-06-04 15:43:50] -rw-r--r--. 2 boinc boinc 215677782 Jun  4 10:02 ATLAS.root_0
[2025-06-04 15:43:50] -rw-r--r--. 2 boinc boinc     15093 Jun  4 10:02 start_atlas.sh
[2025-06-04 15:43:50] -rw-r--r--. 2 boinc boinc    508876 Jun  4 10:02 input.tar.gz
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc 175086739 Jun  4 13:54 HITS.pool.root.1
[2025-06-04 15:43:50] -rw-------. 1 boinc boinc   1566720 Jun  4 13:57 result.tar.gz
15:43:52 (6646): run_atlas exited; CPU time 49036.755294
15:43:52 (6646): called boinc_finish(0)

</stderr_txt>
]]>

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