Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
13:19:18 (3525856): wrapper (7.7.26015): starting
13:19:18 (3525856): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 13:19:18] Arguments: --nthreads 12
[2025-06-04 13:19:18] Threads: 12
[2025-06-04 13:19:18] Checking for CVMFS
[2025-06-04 13:19:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:19:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:19:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:19:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:19:25] 2.12.7.0 3526085 0 25116 146762 3 1 3480592 6144001 0 130560 0 0 0.000 1290 433 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-04 13:19:25] CVMFS is ok
[2025-06-04 13:19:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 13:19:25] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-04 13:19:25] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-04 13:19:25] Further information can be found at the LHC@home message board.
[2025-06-04 13:19:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:19:25] Checking for apptainer binary...
[2025-06-04 13:19:25] apptainer is not installed, using version from CVMFS
[2025-06-04 13:19:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:19:26] aeryn
[2025-06-04 13:19:26] apptainer works
[2025-06-04 13:19:26] Set ATHENA_PROC_NUMBER=12
[2025-06-04 13:19:26] Set ATHENA_CORE_NUMBER=12
[2025-06-04 13:19:26] Starting ATLAS job with PandaID=6677917866
[2025-06-04 13:19:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 14:10:03]  *** The last 200 lines of the pilot log: ***
[2025-06-04 14:10:03]  mtime=0
[2025-06-04 14:10:03]  protocol_id=None
[2025-06-04 14:10:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 14:10:03]  replicas=None
[2025-06-04 14:10:03]  scope=mc23_13p6TeV
[2025-06-04 14:10:03]  status=None
[2025-06-04 14:10:03]  status_code=0
[2025-06-04 14:10:03]  storage_token=
[2025-06-04 14:10:03]  surl=/var/lib/boinc-client/slots/19/PanDA_Pilot-6677917866/log.45006595._041373.job.log.tgz.1
[2025-06-04 14:10:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/23/log.45006595._041373.job.log.tgz.1
[2025-06-04 14:10:03]  workdir=None
[2025-06-04 14:10:03] ]
[2025-06-04 14:10:03] 2025-06-04 02:09:33,076 | INFO     | transferring file log.45006595._041373.job.log.tgz.1 from /var/lib/boinc-client/slots/19/PanDA_Pilot-6677917866/log.45006595._041373.job.log.tgz.1 to /var/lib/boin
[2025-06-04 14:10:03] 2025-06-04 02:09:33,076 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/19/PanDA_Pilot-6677917866/log.45006595._041373.job.log.tgz.1 /var/lib/boinc-client/slots/19/log.4500
[2025-06-04 14:10:03] 2025-06-04 02:09:33,084 | INFO     | adding to output.list: log.45006595._041373.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/23/log.45006595._041373.job.log.tg
[2025-06-04 14:10:03] 2025-06-04 02:09:33,084 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 14:10:03] 2025-06-04 02:09:33,084 | INFO     | summary of transferred files:
[2025-06-04 14:10:03] 2025-06-04 02:09:33,084 | INFO     |  -- lfn=log.45006595._041373.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 14:10:03] 2025-06-04 02:09:33,084 | INFO     | stage-out finished correctly
[2025-06-04 14:10:03] 2025-06-04 02:09:33,156 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 14:10:03] 2025-06-04 02:09:33,216 | INFO     | job 6677917866 has state=finished
[2025-06-04 14:10:03] 2025-06-04 02:09:33,216 | INFO     | preparing for final server update for job 6677917866 in state='finished'
[2025-06-04 14:10:03] 2025-06-04 02:09:33,216 | INFO     | this job has now completed (state=finished)
[2025-06-04 14:10:03] 2025-06-04 02:09:33,216 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 14:10:03] 2025-06-04 02:09:33,216 | INFO     | log transfer has been attempted: DONE
[2025-06-04 14:10:03] 2025-06-04 02:09:33,216 | INFO     | job 6677917866 has finished - writing final server update
[2025-06-04 14:10:03] 2025-06-04 02:09:33,217 | INFO     | total number of processed events: 400 (read)
[2025-06-04 14:10:03] 2025-06-04 02:09:33,237 | INFO     | executing command: lscpu
[2025-06-04 14:10:03] 2025-06-04 02:09:33,251 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 14:10:03] 2025-06-04 02:09:34,190 | INFO     | monitor loop #228: job 0:6677917866 is in state 'finished'
[2025-06-04 14:10:03] 2025-06-04 02:09:34,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 14:10:03] 2025-06-04 02:09:35,032 | INFO     | PID=3530193 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 14:10:03] 2025-06-04 02:09:36,693 | INFO     | monitor loop #229: job 0:6677917866 is in state 'finished'
[2025-06-04 14:10:03] 2025-06-04 02:09:36,694 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 14:10:03] 2025-06-04 02:09:39,195 | INFO     | monitor loop #230: job 0:6677917866 is in state 'finished'
[2025-06-04 14:10:03] 2025-06-04 02:09:39,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 14:10:03] 2025-06-04 02:09:41,698 | INFO     | monitor loop #231: job 0:6677917866 is in state 'finished'
[2025-06-04 14:10:03] 2025-06-04 02:09:41,699 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 14:10:03] 2025-06-04 02:09:44,199 | INFO     | monitor loop #232: job 0:6677917866 is in state 'finished'
[2025-06-04 14:10:03] 2025-06-04 02:09:44,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 14:10:03] 2025-06-04 02:09:44,766 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 14:10:03] 2025-06-04 02:09:44,767 | INFO     | using path: /var/lib/boinc-client/slots/19/PanDA_Pilot-6677917866/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 14:10:03] 2025-06-04 02:09:44,767 | INFO     | extracted standard info from prmon json
[2025-06-04 14:10:03] 2025-06-04 02:09:44,767 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 14:10:03] 2025-06-04 02:09:44,767 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 14:10:03] 2025-06-04 02:09:44,767 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 14:10:03] 2025-06-04 02:09:44,767 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 14:10:03] 2025-06-04 02:09:44,768 | INFO     | fitting pss+swap vs Time
[2025-06-04 14:10:03] 2025-06-04 02:09:44,768 | INFO     | sum of square deviations: 22960430.5
[2025-06-04 14:10:03] 2025-06-04 02:09:44,769 | INFO     | sum of deviations: 719946766.0
[2025-06-04 14:10:03] 2025-06-04 02:09:44,769 | INFO     | mean x: 1749001580.5
[2025-06-04 14:10:03] 2025-06-04 02:09:44,769 | INFO     | mean y: 2840117.1904761903
[2025-06-04 14:10:03] 2025-06-04 02:09:44,769 | INFO     | -- intersect: -54838815905.32459
[2025-06-04 14:10:03] 2025-06-04 02:09:44,769 | INFO     | intersect: -54838815905.32459
[2025-06-04 14:10:03] 2025-06-04 02:09:44,769 | INFO     | chi2: 0.0012826397231763603
[2025-06-04 14:10:03] 2025-06-04 02:09:44,769 | INFO     | -- intersect: -54838815905.32459
[2025-06-04 14:10:03] 2025-06-04 02:09:44,769 | INFO     | current memory leak: 31.36 B/s (using 42 data points, chi2=0.00)
[2025-06-04 14:10:03] 2025-06-04 02:09:44,769 | INFO     | ..............................
[2025-06-04 14:10:03] 2025-06-04 02:09:44,769 | INFO     | . Timing measurements:
[2025-06-04 14:10:03] 2025-06-04 02:09:44,770 | INFO     | . get job = 0 s
[2025-06-04 14:10:03] 2025-06-04 02:09:44,770 | INFO     | . initial setup = 6 s
[2025-06-04 14:10:03] 2025-06-04 02:09:44,770 | INFO     | . payload setup = 6 s
[2025-06-04 14:10:03] 2025-06-04 02:09:44,770 | INFO     | . stage-in = 0 s
[2025-06-04 14:10:03] 2025-06-04 02:09:44,770 | INFO     | . payload execution = 2946 s
[2025-06-04 14:10:03] 2025-06-04 02:09:44,770 | INFO     | . stage-out = 0 s
[2025-06-04 14:10:03] 2025-06-04 02:09:44,770 | INFO     | . log creation = 0 s
[2025-06-04 14:10:03] 2025-06-04 02:09:44,770 | INFO     | ..............................
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | 
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | job summary report
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | --------------------------------------------------
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | PanDA job id: 6677917866
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | task id: 45006595
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | errors: (none)
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | pilot state: finished 
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | transexitcode: 0
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | exeerrorcode: 0
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | exeerrordiag: 
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | exitcode: 0
[2025-06-04 14:10:03] 2025-06-04 02:09:45,326 | INFO     | exitmsg: OK
[2025-06-04 14:10:03] 2025-06-04 02:09:45,327 | INFO     | cpuconsumptiontime: 31426 s
[2025-06-04 14:10:03] 2025-06-04 02:09:45,327 | INFO     | nevents: 400
[2025-06-04 14:10:03] 2025-06-04 02:09:45,327 | INFO     | neventsw: 0
[2025-06-04 14:10:03] 2025-06-04 02:09:45,327 | INFO     | pid: 3536846
[2025-06-04 14:10:03] 2025-06-04 02:09:45,327 | INFO     | pgrp: 3536846
[2025-06-04 14:10:03] 2025-06-04 02:09:45,327 | INFO     | corecount: 12
[2025-06-04 14:10:03] 2025-06-04 02:09:45,327 | INFO     | event service: False
[2025-06-04 14:10:03] 2025-06-04 02:09:45,327 | INFO     | sizes: {0: 2405020, 1: 2405219, 7: 2405425, 11: 2405453, 2956: 2430813, 2957: 2439953, 2969: 2440067}
[2025-06-04 14:10:03] 2025-06-04 02:09:45,327 | INFO     | --------------------------------------------------
[2025-06-04 14:10:03] 2025-06-04 02:09:45,327 | INFO     | 
[2025-06-04 14:10:03] 2025-06-04 02:09:45,327 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/19
[2025-06-04 14:10:03] 2025-06-04 02:09:45,336 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,336 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,336 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,336 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,336 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | job 6677917866 has completed (purged errors)
[2025-06-04 14:10:03] 2025-06-04 02:09:45,337 | INFO     | overall cleanup function is called
[2025-06-04 14:10:03] 2025-06-04 02:09:46,344 | INFO     | --- collectZombieJob: --- 10, [3536846]
[2025-06-04 14:10:03] 2025-06-04 02:09:46,344 | INFO     | zombie collector waiting for pid 3536846
[2025-06-04 14:10:03] 2025-06-04 02:09:46,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 14:10:03] 2025-06-04 02:09:46,344 | INFO     | collected zombie processes
[2025-06-04 14:10:03] 2025-06-04 02:09:46,344 | INFO     | will attempt to kill all subprocesses of pid=3536846
[2025-06-04 14:10:03] 2025-06-04 02:09:46,398 | INFO     | process IDs to be killed: [3536846] (in reverse order)
[2025-06-04 14:10:03] 2025-06-04 02:09:46,419 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 14:10:03] 2025-06-04 02:09:46,419 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 14:10:03] 2025-06-04 02:09:46,422 | INFO     | did not find any defunct processes belonging to 3536846
[2025-06-04 14:10:03] 2025-06-04 02:09:46,424 | INFO     | did not find any defunct processes belonging to 3536846
[2025-06-04 14:10:03] 2025-06-04 02:09:46,424 | INFO     | ready for new job
[2025-06-04 14:10:03] 2025-06-04 02:09:46,424 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 14:10:03] 2025-06-04 02:09:46,425 | INFO     | **************************************
[2025-06-04 14:10:03] 2025-06-04 02:09:46,425 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 14:10:03] 2025-06-04 02:09:46,425 | INFO     | **************************************
[2025-06-04 14:10:03] 2025-06-04 02:09:46,425 | INFO     | 
[2025-06-04 14:10:03] 2025-06-04 02:09:46,444 | INFO     | architecture information:
[2025-06-04 14:10:03] 2025-06-04 02:09:46,445 | INFO     | executing command: cat /etc/os-release
[2025-06-04 14:10:03] 2025-06-04 02:09:46,452 | INFO     | cat /etc/os-release:
[2025-06-04 14:10:03] NAME="CentOS Linux"
[2025-06-04 14:10:03] VERSION="7 (Core)"
[2025-06-04 14:10:03] ID="centos"
[2025-06-04 14:10:03] ID_LIKE="rhel fedora"
[2025-06-04 14:10:03] VERSION_ID="7"
[2025-06-04 14:10:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 14:10:03] ANSI_COLOR="0;31"
[2025-06-04 14:10:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 14:10:03] HOME_URL="https://www.centos.org/"
[2025-06-04 14:10:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 14:10:03] 
[2025-06-04 14:10:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 14:10:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 14:10:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 14:10:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 14:10:03] 
[2025-06-04 14:10:03] 2025-06-04 02:09:46,452 | INFO     | **************************************
[2025-06-04 14:10:03] 2025-06-04 02:09:46,953 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/19
[2025-06-04 14:10:03] 2025-06-04 02:09:46,961 | INFO     | sufficient remaining disk space (686452375552 B)
[2025-06-04 14:10:03] 2025-06-04 02:09:46,962 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 14:10:03] 2025-06-04 02:09:46,962 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 14:10:03] 2025-06-04 02:09:46,962 | INFO     | update_server=False
[2025-06-04 14:10:03] 2025-06-04 02:09:46,962 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 14:10:03] 2025-06-04 02:09:46,962 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 14:10:03] 2025-06-04 02:09:47,057 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 14:10:03] 2025-06-04 02:09:47,057 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 14:10:03] 2025-06-04 02:09:47,057 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 14:10:03] 2025-06-04 02:09:47,270 | INFO     | all payload control threads have been joined
[2025-06-04 14:10:03] 2025-06-04 02:09:47,707 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:10:03] 2025-06-04 02:09:47,708 | INFO     | aborting loop
[2025-06-04 14:10:03] 2025-06-04 02:09:47,803 | INFO     | all data control threads have been joined
[2025-06-04 14:10:03] 2025-06-04 02:09:47,826 | INFO     | all job control threads have been joined
[2025-06-04 14:10:03] 2025-06-04 02:09:47,964 | INFO     | [job] retrieve thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:48,046 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:48,049 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:48,068 | INFO     | [payload] validate_post thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:48,070 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:48,080 | INFO     | [job] validate thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:48,223 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 14:10:03] 2025-06-04 02:09:48,275 | INFO     | [payload] control thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:48,593 | INFO     | [data] copytool_in thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:48,712 | INFO     | [job] job monitor thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:48,809 | INFO     | [data] control thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:48,831 | INFO     | [job] control thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:48,905 | INFO     | [payload] failed_post thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:48,963 | INFO     | [data] copytool_out thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:49,838 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:10:03] 2025-06-04 02:09:50,844 | INFO     | [job] queue monitor thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:52,227 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:57,420 | INFO     | job.realtimelogging is not enabled
[2025-06-04 14:10:03] 2025-06-04 02:09:58,420 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 14:10:03] 2025-06-04 02:09:58,479 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140513291265856)>', '<ExcThread(monitor, started 140512849807104)>']
[2025-06-04 14:10:03] 2025-06-04 02:09:59,113 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 14:10:03] 2025-06-04 02:09:59,113 | INFO     | [monitor] control thread has ended
[2025-06-04 14:10:03] 2025-06-04 02:10:03,505 | INFO     | all workflow threads have been joined
[2025-06-04 14:10:03] 2025-06-04 02:10:03,505 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 14:10:03] 2025-06-04 02:10:03,505 | INFO     | traces error code: 0
[2025-06-04 14:10:03] 2025-06-04 02:10:03,505 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 14:10:03] 2025-06-04 02:10:03,567 [wrapper] ==== pilot stdout END ====
[2025-06-04 14:10:03] 2025-06-04 02:10:03,569 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 14:10:03] 2025-06-04 02:10:03,570 [wrapper] pilotpid: 3530193
[2025-06-04 14:10:03] 2025-06-04 02:10:03,571 [wrapper] Pilot exit status: 0
[2025-06-04 14:10:03] 2025-06-04 02:10:03,577 [wrapper] pandaids: 6677917866
[2025-06-04 14:10:03] 2025-06-04 02:10:03,591 [wrapper] cleanup supervisor_pilot 3546087 3530194
[2025-06-04 14:10:03] 2025-06-04 02:10:03,592 [wrapper] Test setup, not cleaning
[2025-06-04 14:10:03] 2025-06-04 02:10:03,594 [wrapper] apfmon messages muted
[2025-06-04 14:10:03] 2025-06-04 02:10:03,595 [wrapper] ==== wrapper stdout END ====
[2025-06-04 14:10:03] 2025-06-04 02:10:03,597 [wrapper] ==== wrapper stderr END ====
[2025-06-04 14:10:03]  *** Error codes and diagnostics ***
[2025-06-04 14:10:03]     "exeErrorCode": 0,
[2025-06-04 14:10:03]     "exeErrorDiag": "",
[2025-06-04 14:10:03]     "pilotErrorCode": 0,
[2025-06-04 14:10:03]     "pilotErrorDiag": "",
[2025-06-04 14:10:03]  *** Listing of results directory ***
[2025-06-04 14:10:03] total 392608
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc    495897 Jun  4 05:46 pilot3.tar.gz
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc      5111 Jun  4 06:00 queuedata.json
[2025-06-04 14:10:03] -rwx------ 1 boinc boinc     37140 Jun  4 06:00 runpilot2-wrapper.sh
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc       100 Jun  4 13:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 14:10:03] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 13:19 run_atlas
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc       105 Jun  4 13:19 job.xml
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc      9253 Jun  4 13:19 init_data.xml
[2025-06-04 14:10:03] -rw-r--r-- 2 boinc boinc 216461564 Jun  4 13:19 EVNT.45006593._001657.pool.root.1
[2025-06-04 14:10:03] -rw-r--r-- 2 boinc boinc     15093 Jun  4 13:19 start_atlas.sh
[2025-06-04 14:10:03] drwxrwx--x 2 boinc boinc      4096 Jun  4 13:19 shared
[2025-06-04 14:10:03] -rw-r--r-- 2 boinc boinc    508874 Jun  4 13:19 input.tar.gz
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc         0 Jun  4 13:19 boinc_lockfile
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc      2525 Jun  4 13:19 pandaJob.out
[2025-06-04 14:10:03] -rw------- 1 boinc boinc    986069 Jun  4 13:19 agis_schedconf.cvmfs.json
[2025-06-04 14:10:03] -rw------- 1 boinc boinc   1603667 Jun  4 13:19 agis_ddmendpoints.agis.ALL.json
[2025-06-04 14:10:03] drwx------ 4 boinc boinc      4096 Jun  4 13:20 pilot3
[2025-06-04 14:10:03] -rw------- 1 boinc boinc 180439545 Jun  4 14:09 HITS.45006595._041373.pool.root.1
[2025-06-04 14:10:03] -rw------- 1 boinc boinc        95 Jun  4 14:09 pilot_heartbeat.json
[2025-06-04 14:10:03] -rw------- 1 boinc boinc      1026 Jun  4 14:09 memory_monitor_summary.json
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc       529 Jun  4 14:09 boinc_task_state.xml
[2025-06-04 14:10:03] -rw------- 1 boinc boinc    334101 Jun  4 14:09 log.45006595._041373.job.log.tgz.1
[2025-06-04 14:10:03] -rw------- 1 boinc boinc      7671 Jun  4 14:09 heartbeat.json
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc      8192 Jun  4 14:09 boinc_mmap_file
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc        27 Jun  4 14:09 wrapper_checkpoint.txt
[2025-06-04 14:10:03] -rw------- 1 boinc boinc      4434 Jun  4 14:10 pilotlog.txt
[2025-06-04 14:10:03] -rw------- 1 boinc boinc    310937 Jun  4 14:10 log.45006595._041373.job.log.1
[2025-06-04 14:10:03] -rw------- 1 boinc boinc       357 Jun  4 14:10 output.list
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc       620 Jun  4 14:10 runtime_log
[2025-06-04 14:10:03] -rw------- 1 boinc boinc    665600 Jun  4 14:10 result.tar.gz
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc      8711 Jun  4 14:10 runtime_log.err
[2025-06-04 14:10:03] -rw------- 1 boinc boinc       645 Jun  4 14:10 lkyKDmH7kg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFWlKDmNct7Co.diag
[2025-06-04 14:10:03] -rw-r--r-- 1 boinc boinc     21838 Jun  4 14:10 stderr.txt
[2025-06-04 14:10:03] HITS file was successfully produced:
[2025-06-04 14:10:03] -rw------- 1 boinc boinc 180439545 Jun  4 14:09 shared/HITS.pool.root.1
[2025-06-04 14:10:03]  *** Contents of shared directory: ***
[2025-06-04 14:10:03] total 388776
[2025-06-04 14:10:03] -rw-r--r-- 2 boinc boinc 216461564 Jun  4 13:19 ATLAS.root_0
[2025-06-04 14:10:03] -rw-r--r-- 2 boinc boinc     15093 Jun  4 13:19 start_atlas.sh
[2025-06-04 14:10:03] -rw-r--r-- 2 boinc boinc    508874 Jun  4 13:19 input.tar.gz
[2025-06-04 14:10:03] -rw------- 1 boinc boinc 180439545 Jun  4 14:09 HITS.pool.root.1
[2025-06-04 14:10:03] -rw------- 1 boinc boinc    665600 Jun  4 14:10 result.tar.gz
14:10:05 (3525856): run_atlas exited; CPU time 31450.921225
14:10:05 (3525856): called boinc_finish(0)

</stderr_txt>
]]>

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