Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 14:45:42 (11220): Detected: vboxwrapper 26206
2025-06-04 14:45:42 (11220): Detected: BOINC client v8.0.2
2025-06-04 14:45:43 (11220): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-04 14:45:43 (11220): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 14:45:44 (11220): Create VM. (boinc_785abbf6d3e6c59d, slot#6)
2025-06-04 14:45:44 (11220): Setting Memory Size for VM. (4800MB)
2025-06-04 14:45:44 (11220): Setting CPU Count for VM. (8)
2025-06-04 14:45:45 (11220): Setting Chipset Options for VM.
2025-06-04 14:45:45 (11220): Setting Graphics Controller Options for VM.
2025-06-04 14:45:45 (11220): Setting Boot Options for VM.
2025-06-04 14:45:45 (11220): Setting Network Configuration for NAT.
2025-06-04 14:45:46 (11220): Enabling VM Network Access.
2025-06-04 14:45:46 (11220): Disabling USB Support for VM.
2025-06-04 14:45:46 (11220): Disabling COM Port Support for VM.
2025-06-04 14:45:47 (11220): Disabling LPT Port Support for VM.
2025-06-04 14:45:47 (11220): Disabling Audio Support for VM.
2025-06-04 14:45:47 (11220): Disabling Clipboard Support for VM.
2025-06-04 14:45:47 (11220): Disabling Drag and Drop Support for VM.
2025-06-04 14:45:48 (11220): Adding storage controller(s) to VM.
2025-06-04 14:45:48 (11220): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 14:45:51 (11220): Adding VirtualBox Guest Additions to VM.
2025-06-04 14:45:51 (11220): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 14:45:51 (11220): forwarding host port 56401 to guest port 80
2025-06-04 14:45:52 (11220): Enabling remote desktop for VM.
2025-06-04 14:45:52 (11220): Required extension pack not installed, remote desktop not enabled.
2025-06-04 14:45:52 (11220): Enabling shared directory for VM.
2025-06-04 14:45:52 (11220): Starting VM using VBoxManage interface. (boinc_785abbf6d3e6c59d, slot#6)
2025-06-04 14:46:01 (11220): Successfully started VM. (PID = '9252')
2025-06-04 14:46:01 (11220): Reporting VM Process ID to BOINC.
2025-06-04 14:46:01 (11220): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-04 14:46:01 (11220): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 14:46:01 (11220): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 14:46:01 (11220): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 14:46:01 (11220): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 14:46:01 (11220): Detected: Web Application Enabled (http://localhost:56401)
2025-06-04 14:46:01 (11220): Preference change detected
2025-06-04 14:46:01 (11220): Setting CPU throttle for VM. (60%)
2025-06-04 14:46:02 (11220): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 14:46:03 (11220): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 14:46:03 (11220): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 14:46:07 (11220): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 14:46:07 (11220): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 14:46:07 (11220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 14:46:18 (11220): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 14:46:18 (11220): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 14:46:34 (11220): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 14:46:34 (11220): Guest Log: 00:00:00.000223 main     Log opened 2025-06-04T14:46:31.993628000Z
2025-06-04 14:46:34 (11220): Guest Log: 00:00:00.000393 main     OS Product: Linux
2025-06-04 14:46:34 (11220): Guest Log: 00:00:00.000456 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 14:46:34 (11220): Guest Log: 00:00:00.000520 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 14:46:34 (11220): Guest Log: 00:00:00.000570 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 14:46:34 (11220): Guest Log: 00:00:00.000572 main     Process ID: 1369
2025-06-04 14:46:34 (11220): Guest Log: 00:00:00.000573 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 14:46:34 (11220): Guest Log: 00:00:00.001988 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 14:46:34 (11220): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 14:46:34 (11220): Guest Log: [INFO] Mounting shared directory
2025-06-04 14:46:34 (11220): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 14:46:44 (11220): Guest Log: 00:00:10.037044 timesync vgsvcTimeSyncWorker: Radical guest time change: -35 987 772 648 000ns (GuestNow=1 749 012 404 227 867 000 ns GuestLast=1 749 048 392 000 515 000 ns fSetTimeLastLoop=true )
2025-06-04 14:46:44 (11220): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 14:46:44 (11220): Guest Log: [INFO] Detected branch: prod
2025-06-04 14:46:45 (11220): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 14:46:45 (11220): Guest Log: Copying input files
2025-06-04 14:46:48 (11220): Guest Log: Copied input files into RunAtlas.
2025-06-04 14:46:48 (11220): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 14:46:48 (11220): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 14:46:48 (11220): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 14:46:48 (11220): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 14:47:00 (11220): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 14:47:00 (11220): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 14:47:00 (11220): Guest Log: 2.6.3.0 1648 0 30172 146768 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 14:47:01 (11220): Guest Log: copied the webapp to /var/www
2025-06-04 14:47:01 (11220): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-04 14:47:01 (11220): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-04 14:47:01 (11220): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 14:47:02 (11220): Guest Log:  *** Starting ATLAS job. (PandaID=6677917903 taskID=45006595) ***
2025-06-04 16:12:47 (11220): Preference change detected
2025-06-04 16:12:47 (11220): Setting CPU throttle for VM. (100%)
2025-06-04 16:12:47 (11220): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 16:13:07 (11220): Preference change detected
2025-06-04 16:13:07 (11220): Setting CPU throttle for VM. (100%)
2025-06-04 16:13:07 (11220): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 16:26:06 (11220): Status Report: Elapsed Time: '6000.000000'
2025-06-04 16:26:06 (11220): Status Report: CPU Time: '24745.890625'
2025-06-04 16:46:21 (11220): VM state change detected. (old = 'running', new = 'paused')
2025-06-04 19:15:21 (11220): VM state change detected. (old = 'paused', new = 'running')
2025-06-04 19:15:23 (11220): Guest Log: 01:59:48.598098 timesync vgsvcTimeSyncWorker: Radical host time change: 8 949 826 000 000ns (HostNow=1 749 028 522 679 000 000 ns HostLast=1 749 019 572 853 000 000 ns)
2025-06-04 19:15:33 (11220): Guest Log: 01:59:58.604682 timesync vgsvcTimeSyncWorker: Radical guest time change: 8 949 899 821 000ns (GuestNow=1 749 028 532 686 586 000 ns GuestLast=1 749 019 582 786 765 000 ns fSetTimeLastLoop=true )
2025-06-04 20:06:26 (11220): Guest Log:  *** Job finished ***
2025-06-04 20:06:26 (11220): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:14,527 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:15,387 | INFO     | [data] copytool_out thread has finished
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:18,534 | INFO     | [data] queue_monitor thread has finished
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:20,428 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140531549960000)>', '<ExcThread(monitor, started 140531095025408)>']
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:21,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:21,156 | INFO     | [monitor] control thread has ended
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,491 | INFO     | all workflow threads have been joined
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,491 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,491 | INFO     | traces error code: 0
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,491 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,633 [wrapper] ==== pilot stdout END ====
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,638 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,642 [wrapper] pilotpid: 6013
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,646 [wrapper] Pilot exit status: 0
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,730 [wrapper] pandaids: 6677917903
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,757 [wrapper] cleanup supervisor_pilot  8587 6014
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,766 [wrapper] Test setup, not cleaning
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,770 [wrapper] apfmon messages muted
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,775 [wrapper] ==== wrapper stdout END ====
2025-06-04 20:06:26 (11220): Guest Log: 2025-06-04 10:06:25,779 [wrapper] ==== wrapper stderr END ====
2025-06-04 20:06:26 (11220): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 20:06:26 (11220): Guest Log:     "exeErrorCode": 0,
2025-06-04 20:06:26 (11220): Guest Log:     "exeErrorDiag": "",
2025-06-04 20:06:26 (11220): Guest Log:     "pilotErrorCode": 0,
2025-06-04 20:06:26 (11220): Guest Log:     "pilotErrorDiag": "",
2025-06-04 20:06:26 (11220): Guest Log:  *** Listing of results directory ***
2025-06-04 20:06:26 (11220): Guest Log: total 182144
2025-06-04 20:06:26 (11220): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 17:46 pilot3.tar.gz
2025-06-04 20:06:26 (11220): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 18:00 queuedata.json
2025-06-04 20:06:26 (11220): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 18:00 runpilot2-wrapper.sh
2025-06-04 20:06:26 (11220): Guest Log: -rwxr-xr-x. 1 atlas atlas     10444 Jun  4 04:46 init_data.xml
2025-06-04 20:06:26 (11220): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 04:46 start_atlas.sh
2025-06-04 20:06:26 (11220): Guest Log: -rwxr-xr-x. 1 atlas atlas    508877 Jun  4 04:46 input.tar.gz
2025-06-04 20:06:26 (11220): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 04:46 EVNT.45006593._001658.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 20:06:26 (11220): Guest Log: -rw-r--r--. 1 atlas atlas      2526 Jun  4 04:47 pandaJob.out
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas    986745 Jun  4 04:48 agis_schedconf.cvmfs.json
2025-06-04 20:06:26 (11220): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 04:48 pilot3
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas 180456132 Jun  4 10:05 HITS.45006595._041410.pool.root.1
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas      1031 Jun  4 10:05 memory_monitor_summary.json
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  4 10:05 agis_ddmendpoints.agis.ALL.json
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas    348119 Jun  4 10:05 log.45006595._041410.job.log.tgz.1
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas        97 Jun  4 10:06 pilot_heartbeat.json
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas      7725 Jun  4 10:06 heartbeat.json
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  4 10:06 pilotlog.txt
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas    798888 Jun  4 10:06 log.45006595._041410.job.log.1
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 10:06 output.list
2025-06-04 20:06:26 (11220): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 10:06 runtime_log
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas   1167360 Jun  4 10:06 result.tar.gz
2025-06-04 20:06:26 (11220): Guest Log: -rw-r--r--. 1 atlas atlas      8596 Jun  4 10:06 runtime_log.err
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas       659 Jun  4 10:06 lquLDmH7kg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpWlKDmYEt2qm.diag
2025-06-04 20:06:26 (11220): Guest Log: Looking for outputfile HITS.45006595._041410.pool.root.1
2025-06-04 20:06:26 (11220): Guest Log: HITS file was successfully produced
2025-06-04 20:06:26 (11220): Guest Log: -rw-------. 1 atlas atlas 180456132 Jun  4 10:05 /home/atlas/RunAtlas/HITS.45006595._041410.pool.root.1
2025-06-04 20:06:27 (11220): Guest Log: Successfully finished the ATLAS job!
2025-06-04 20:06:27 (11220): Guest Log: Copying the results back to the shared directory!
2025-06-04 20:06:27 (11220): Guest Log:  *** Contents of shared directory: ***
2025-06-04 20:06:27 (11220): Guest Log: total 387336
2025-06-04 20:06:27 (11220): Guest Log: -rwxrwxrwx. 1 root root 214465038 Jun  4 04:45 ATLAS.root_0
2025-06-04 20:06:27 (11220): Guest Log: -rwxrwxrwx. 1 root root 180456132 Jun  4  2025 HITS.pool.root.1
2025-06-04 20:06:27 (11220): Guest Log: -rwxrwxrwx. 1 root root     10444 Jun  4 04:45 init_data.xml
2025-06-04 20:06:27 (11220): Guest Log: -rwxrwxrwx. 1 root root    508877 Jun  3 23:15 input.tar.gz
2025-06-04 20:06:27 (11220): Guest Log: -rwxrwxrwx. 1 root root   1167360 Jun  4  2025 result.tar.gz
2025-06-04 20:06:27 (11220): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 23:15 start_atlas.sh
2025-06-04 20:06:27 (11220): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 20:06:27 (11220): VM Completion File Detected.
2025-06-04 20:06:27 (11220): Powering off VM.
2025-06-04 20:06:28 (11220): Successfully stopped VM.
2025-06-04 20:06:28 (11220): Deregistering VM. (boinc_785abbf6d3e6c59d, slot#6)
2025-06-04 20:06:28 (11220): Removing network bandwidth throttle group from VM.
2025-06-04 20:06:29 (11220): Removing VM from VirtualBox.
20:06:34 (11220): called boinc_finish(0)

</stderr_txt>
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