Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:55:56 (28101): wrapper (7.7.26015): starting
08:55:56 (28101): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:55:56] Arguments: --nthreads 8
[2025-06-04 08:55:56] Threads: 8
[2025-06-04 08:55:56] Checking for CVMFS
[2025-06-04 08:55:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:55:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:55:57] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:55:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:55:58] 2.11.2.0 20118 32888 91448 146771 0 16 17260049 25165824 3134 130560 0 16705890 99.804 19245386 2016 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 08:55:58] CVMFS is ok
[2025-06-04 08:55:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:55:58] Checking for apptainer binary...
[2025-06-04 08:55:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:55:58] Running /usr/bin/apptainer --version
[2025-06-04 08:55:58] apptainer version 1.3.2-1.el7
[2025-06-04 08:55:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:56:32] cg-vwn344.simple-grid.lan
[2025-06-04 08:56:32] apptainer works
[2025-06-04 08:56:32] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:56:32] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:56:32] Starting ATLAS job with PandaID=6677976725
[2025-06-04 08:56:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:01:28]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:01:28] 2025-06-04 10:54:46,957 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 13:01:28] 2025-06-04 10:54:46,957 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 13:01:28] 2025-06-04 10:54:46,962 | INFO     | fitting pss+swap vs Time
[2025-06-04 13:01:28] 2025-06-04 10:54:46,963 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 13:01:28] 2025-06-04 10:54:46,974 | INFO     | sum of deviations: 90162303397.5
[2025-06-04 13:01:28] 2025-06-04 10:54:46,974 | INFO     | mean x: 1749027628.5
[2025-06-04 13:01:28] 2025-06-04 10:54:46,974 | INFO     | mean y: 2416004.3018018017
[2025-06-04 13:01:28] 2025-06-04 10:54:46,975 | INFO     | -- intersect: -46480475185.256714
[2025-06-04 13:01:28] 2025-06-04 10:54:46,975 | INFO     | intersect: -46480475185.256714
[2025-06-04 13:01:28] 2025-06-04 10:54:46,975 | INFO     | chi2: 6.849509275023053
[2025-06-04 13:01:28] 2025-06-04 10:54:46,976 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 13:01:28] 2025-06-04 10:54:46,977 | INFO     | sum of deviations: 102547486374.00002
[2025-06-04 13:01:28] 2025-06-04 10:54:46,978 | INFO     | mean x: 1749027476.0
[2025-06-04 13:01:28] 2025-06-04 10:54:46,978 | INFO     | mean y: 2424249.9723502304
[2025-06-04 13:01:28] 2025-06-04 10:54:46,978 | INFO     | -- intersect: -56604981077.7489
[2025-06-04 13:01:28] 2025-06-04 10:54:46,978 | INFO     | intersect: -56604981077.7489
[2025-06-04 13:01:28] 2025-06-04 10:54:46,978 | INFO     | chi2: 6.133355420473463
[2025-06-04 13:01:28] 2025-06-04 10:54:46,978 | INFO     | current chi2=6.133355420473463 (change=10.455549818160941 %)
[2025-06-04 13:01:28] 2025-06-04 10:54:46,979 | INFO     | right removable region: 216
[2025-06-04 13:01:28] 2025-06-04 10:54:46,979 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 13:01:28] 2025-06-04 10:54:46,981 | INFO     | sum of deviations: 14737333369.000002
[2025-06-04 13:01:28] 2025-06-04 10:54:46,981 | INFO     | mean x: 1749027781.0
[2025-06-04 13:01:28] 2025-06-04 10:54:46,981 | INFO     | mean y: 2467278.193548387
[2025-06-04 13:01:28] 2025-06-04 10:54:46,981 | INFO     | -- intersect: -8132713587.220561
[2025-06-04 13:01:28] 2025-06-04 10:54:46,981 | INFO     | intersect: -8132713587.220561
[2025-06-04 13:01:28] 2025-06-04 10:54:46,982 | INFO     | chi2: 2.111923148070513
[2025-06-04 13:01:28] 2025-06-04 10:54:46,982 | INFO     | current chi2=2.111923148070513 (change=69.16679628755733 %)
[2025-06-04 13:01:28] 2025-06-04 10:54:46,982 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 13:01:28] 2025-06-04 10:54:47,015 | INFO     | sum of deviations: -21846728978.0
[2025-06-04 13:01:28] 2025-06-04 10:54:47,016 | INFO     | mean x: 1749027933.5
[2025-06-04 13:01:28] 2025-06-04 10:54:47,016 | INFO     | mean y: 2493192.603773585
[2025-06-04 13:01:28] 2025-06-04 10:54:47,016 | INFO     | -- intersect: 12935717891.764994
[2025-06-04 13:01:28] 2025-06-04 10:54:47,016 | INFO     | intersect: 12935717891.764994
[2025-06-04 13:01:28] 2025-06-04 10:54:47,016 | INFO     | chi2: 0.8454110005882487
[2025-06-04 13:01:28] 2025-06-04 10:54:47,016 | INFO     | current chi2=0.8454110005882487 (change=59.96961341322341 %)
[2025-06-04 13:01:28] 2025-06-04 10:54:47,017 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 13:01:28] 2025-06-04 10:54:47,018 | INFO     | sum of deviations: -26235209156.0
[2025-06-04 13:01:28] 2025-06-04 10:54:47,021 | INFO     | mean x: 1749028086.0
[2025-06-04 13:01:28] 2025-06-04 10:54:47,021 | INFO     | mean y: 2496430.5169082126
[2025-06-04 13:01:28] 2025-06-04 10:54:47,021 | INFO     | -- intersect: 16686565903.397581
[2025-06-04 13:01:28] 2025-06-04 10:54:47,021 | INFO     | intersect: 16686565903.397581
[2025-06-04 13:01:28] 2025-06-04 10:54:47,022 | INFO     | chi2: 0.8075171738983649
[2025-06-04 13:01:28] 2025-06-04 10:54:47,022 | INFO     | current chi2=0.8075171738983649 (change=4.48229638170272 %)
[2025-06-04 13:01:28] 2025-06-04 10:54:47,022 | INFO     | left removable region: 30
[2025-06-04 13:01:28] 2025-06-04 10:54:47,022 | INFO     | sum of square deviations: 1995283922.5
[2025-06-04 13:01:28] 2025-06-04 10:54:47,024 | INFO     | sum of deviations: -10249119319.5
[2025-06-04 13:01:28] 2025-06-04 10:54:47,024 | INFO     | mean x: 1749028360.5
[2025-06-04 13:01:28] 2025-06-04 10:54:47,024 | INFO     | mean y: 2505659.435483871
[2025-06-04 13:01:28] 2025-06-04 10:54:47,024 | INFO     | -- intersect: 8986690896.338259
[2025-06-04 13:01:28] 2025-06-04 10:54:47,024 | INFO     | intersect: 8986690896.338259
[2025-06-04 13:01:28] 2025-06-04 10:54:47,025 | INFO     | chi2: 0.014539519079636725
[2025-06-04 13:01:28] 2025-06-04 10:54:47,025 | INFO     | -- intersect: 8986690896.338259
[2025-06-04 13:01:28] 2025-06-04 10:54:47,025 | INFO     | current memory leak: -5.14 B/s (using 186 data points, chi2=0.01)
[2025-06-04 13:01:28] 2025-06-04 10:54:47,026 | INFO     | ..............................
[2025-06-04 13:01:28] 2025-06-04 10:54:47,026 | INFO     | . Timing measurements:
[2025-06-04 13:01:28] 2025-06-04 10:54:47,026 | INFO     | . get job = 0 s
[2025-06-04 13:01:28] 2025-06-04 10:54:47,026 | INFO     | . initial setup = 10 s
[2025-06-04 13:01:28] 2025-06-04 10:54:47,027 | INFO     | . payload setup = 156 s
[2025-06-04 13:01:28] 2025-06-04 10:54:47,027 | INFO     | . stage-in = 0 s
[2025-06-04 13:01:28] 2025-06-04 10:54:47,027 | INFO     | . payload execution = 13655 s
[2025-06-04 13:01:28] 2025-06-04 10:54:47,027 | INFO     | . stage-out = 4 s
[2025-06-04 13:01:28] 2025-06-04 10:54:47,028 | INFO     | . log creation = 1 s
[2025-06-04 13:01:28] 2025-06-04 10:54:47,028 | INFO     | ..............................
[2025-06-04 13:01:28] 2025-06-04 10:54:47,198 | INFO     | 
[2025-06-04 13:01:28] 2025-06-04 10:54:47,199 | INFO     | job summary report
[2025-06-04 13:01:28] 2025-06-04 10:54:47,199 | INFO     | --------------------------------------------------
[2025-06-04 13:01:28] 2025-06-04 10:54:47,199 | INFO     | PanDA job id: 6677976725
[2025-06-04 13:01:28] 2025-06-04 10:54:47,199 | INFO     | task id: 45006595
[2025-06-04 13:01:28] 2025-06-04 10:54:47,199 | INFO     | errors: (none)
[2025-06-04 13:01:28] 2025-06-04 10:54:47,199 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:01:28] 2025-06-04 10:54:47,199 | INFO     | pilot state: finished 
[2025-06-04 13:01:28] 2025-06-04 10:54:47,199 | INFO     | transexitcode: 0
[2025-06-04 13:01:28] 2025-06-04 10:54:47,199 | INFO     | exeerrorcode: 0
[2025-06-04 13:01:28] 2025-06-04 10:54:47,200 | INFO     | exeerrordiag: 
[2025-06-04 13:01:28] 2025-06-04 10:54:47,200 | INFO     | exitcode: 0
[2025-06-04 13:01:28] 2025-06-04 10:54:47,200 | INFO     | exitmsg: OK
[2025-06-04 13:01:28] 2025-06-04 10:54:47,200 | INFO     | cpuconsumptiontime: 50745 s
[2025-06-04 13:01:28] 2025-06-04 10:54:47,200 | INFO     | nevents: 400
[2025-06-04 13:01:28] 2025-06-04 10:54:47,200 | INFO     | neventsw: 0
[2025-06-04 13:01:28] 2025-06-04 10:54:47,200 | INFO     | pid: 13869
[2025-06-04 13:01:28] 2025-06-04 10:54:47,200 | INFO     | pgrp: 13869
[2025-06-04 13:01:28] 2025-06-04 10:54:47,200 | INFO     | corecount: 8
[2025-06-04 13:01:28] 2025-06-04 10:54:47,200 | INFO     | event service: False
[2025-06-04 13:01:28] 2025-06-04 10:54:47,200 | INFO     | sizes: {0: 2405013, 1: 2405212, 12: 2405212, 23: 2405240, 33: 2405268, 44: 2405324, 55: 2405480, 66: 2405508, 76: 2405536, 87: 2405592, 88: 2405826, 98: 2406134, 1
[2025-06-04 13:01:28] 2025-06-04 10:54:47,201 | INFO     | --------------------------------------------------
[2025-06-04 13:01:28] 2025-06-04 10:54:47,201 | INFO     | 
[2025-06-04 13:01:28] 2025-06-04 10:54:47,201 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-04 13:01:28] 2025-06-04 10:54:47,300 | INFO     | PID=5220 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-06-04 13:01:28] 2025-06-04 10:54:47,301 | INFO     | .. there are 9 such processes running
[2025-06-04 13:01:28] 2025-06-04 10:54:47,322 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,322 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,323 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,323 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,323 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,323 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,323 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,323 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,323 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,323 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,323 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,324 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,324 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,324 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,324 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,324 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,324 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,324 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:01:28] 2025-06-04 10:54:47,324 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,324 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:01:28] 2025-06-04 10:54:47,324 | INFO     | job 6677976725 has completed (purged errors)
[2025-06-04 13:01:28] 2025-06-04 10:54:47,325 | INFO     | overall cleanup function is called
[2025-06-04 13:01:28] 2025-06-04 10:54:48,334 | INFO     | --- collectZombieJob: --- 10, [13869]
[2025-06-04 13:01:28] 2025-06-04 10:54:48,334 | INFO     | zombie collector waiting for pid 13869
[2025-06-04 13:01:28] 2025-06-04 10:54:48,334 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:01:28] 2025-06-04 10:54:48,334 | INFO     | collected zombie processes
[2025-06-04 13:01:28] 2025-06-04 10:54:48,334 | INFO     | will attempt to kill all subprocesses of pid=13869
[2025-06-04 13:01:28] 2025-06-04 10:54:48,460 | INFO     | process IDs to be killed: [13869] (in reverse order)
[2025-06-04 13:01:28] 2025-06-04 10:54:49,132 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:01:28] 2025-06-04 10:54:49,133 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:01:28] 2025-06-04 10:54:49,136 | INFO     | did not find any defunct processes belonging to 13869
[2025-06-04 13:01:28] 2025-06-04 10:54:49,140 | INFO     | did not find any defunct processes belonging to 13869
[2025-06-04 13:01:28] 2025-06-04 10:54:49,141 | INFO     | ready for new job
[2025-06-04 13:01:28] 2025-06-04 10:54:49,141 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:01:28] 2025-06-04 10:54:49,143 | INFO     | **************************************
[2025-06-04 13:01:28] 2025-06-04 10:54:49,143 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:01:28] 2025-06-04 10:54:49,143 | INFO     | **************************************
[2025-06-04 13:01:28] 2025-06-04 10:54:49,143 | INFO     | 
[2025-06-04 13:01:28] 2025-06-04 10:54:49,144 | INFO     | pilot is running in a VM
[2025-06-04 13:01:28] 2025-06-04 10:54:49,144 | INFO     | architecture information:
[2025-06-04 13:01:28] 2025-06-04 10:54:49,151 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:01:28] 2025-06-04 10:54:49,274 | INFO     | cat /etc/os-release:
[2025-06-04 13:01:28] NAME="CentOS Linux"
[2025-06-04 13:01:28] VERSION="7 (Core)"
[2025-06-04 13:01:28] ID="centos"
[2025-06-04 13:01:28] ID_LIKE="rhel fedora"
[2025-06-04 13:01:28] VERSION_ID="7"
[2025-06-04 13:01:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:01:28] ANSI_COLOR="0;31"
[2025-06-04 13:01:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:01:28] HOME_URL="https://www.centos.org/"
[2025-06-04 13:01:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:01:28] 
[2025-06-04 13:01:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:01:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:01:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:01:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:01:28] 
[2025-06-04 13:01:28] 2025-06-04 10:54:49,275 | INFO     | **************************************
[2025-06-04 13:01:28] 2025-06-04 10:54:49,778 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-04 13:01:28] 2025-06-04 10:54:50,067 | INFO     | sufficient remaining disk space (496920166400 B)
[2025-06-04 13:01:28] 2025-06-04 10:54:50,068 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:01:28] 2025-06-04 10:54:50,068 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:01:28] 2025-06-04 10:54:50,068 | INFO     | update_server=False
[2025-06-04 13:01:28] 2025-06-04 10:54:50,068 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:01:28] 2025-06-04 10:54:50,068 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 13:01:28] 2025-06-04 10:54:50,069 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:01:28] 2025-06-04 10:54:50,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:01:28] 2025-06-04 10:54:50,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:01:28] 2025-06-04 10:54:50,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:01:28] 2025-06-04 10:54:50,225 | INFO     | all payload control threads have been joined
[2025-06-04 13:01:28] 2025-06-04 10:54:50,384 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:01:28] 2025-06-04 10:54:50,384 | INFO     | aborting loop
[2025-06-04 13:01:28] 2025-06-04 10:54:50,478 | INFO     | all job control threads have been joined
[2025-06-04 13:01:28] 2025-06-04 10:54:50,736 | INFO     | all data control threads have been joined
[2025-06-04 13:01:28] 2025-06-04 10:54:51,074 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:51,231 | INFO     | [payload] control thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:51,357 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:51,390 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:51,482 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:51,484 | INFO     | [job] control thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:51,618 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:51,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:01:28] 2025-06-04 10:54:51,742 | INFO     | [data] control thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:51,887 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:52,081 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:52,214 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:01:28] 2025-06-04 10:54:52,281 | INFO     | [job] validate thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:52,512 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:52,574 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:53,220 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:54:55,708 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:55:00,230 | INFO     | job.realtimelogging is not enabled
[2025-06-04 13:01:28] 2025-06-04 10:55:01,236 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:01:28] 2025-06-04 10:55:02,384 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140508890593088)>', '<ExcThread(monitor, started 140508311582464)>']
[2025-06-04 13:01:28] 2025-06-04 10:55:03,151 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:01:28] 2025-06-04 10:55:03,151 | INFO     | [monitor] control thread has ended
[2025-06-04 13:01:28] 2025-06-04 10:55:07,410 | INFO     | all workflow threads have been joined
[2025-06-04 13:01:28] 2025-06-04 10:55:07,410 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:01:28] 2025-06-04 10:55:07,410 | INFO     | traces error code: 0
[2025-06-04 13:01:28] 2025-06-04 10:55:07,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:01:28] 2025-06-04 10:55:07,764 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:01:28] 2025-06-04 10:55:07,835 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:01:28] 2025-06-04 10:55:07,931 [wrapper] pilotpid: 5220
[2025-06-04 13:01:28] 2025-06-04 10:55:08,034 [wrapper] Pilot exit status: 0
[2025-06-04 13:01:28] 2025-06-04 10:55:08,530 [wrapper] pandaids: 6677976725
[2025-06-04 13:01:28] 2025-06-04 10:55:09,415 [wrapper] cleanup supervisor_pilot 22747 5221
[2025-06-04 13:01:28] 2025-06-04 10:55:09,454 [wrapper] Test setup, not cleaning
[2025-06-04 13:01:28] 2025-06-04 10:55:09,526 [wrapper] apfmon messages muted
[2025-06-04 13:01:28] 2025-06-04 10:55:09,561 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:01:28] 2025-06-04 10:55:09,616 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:01:28]  *** Error codes and diagnostics ***
[2025-06-04 13:01:28]     "exeErrorCode": 0,
[2025-06-04 13:01:28]     "exeErrorDiag": "",
[2025-06-04 13:01:28]     "pilotErrorCode": 0,
[2025-06-04 13:01:28]     "pilotErrorDiag": "",
[2025-06-04 13:01:28]  *** Listing of results directory ***
[2025-06-04 13:01:28] total 395296
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc    495897 Jun  3 20:57 pilot3.tar.gz
[2025-06-04 13:01:28] -rwx------. 1 boinc boinc     37140 Jun  3 21:11 runpilot2-wrapper.sh
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc      5111 Jun  3 21:11 queuedata.json
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc       100 Jun  4 08:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:01:28] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 08:55 run_atlas
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc       105 Jun  4 08:55 job.xml
[2025-06-04 13:01:28] -rw-r--r--. 2 boinc boinc 216894554 Jun  4 08:55 EVNT.45006593._001742.pool.root.1
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc      6391 Jun  4 08:55 init_data.xml
[2025-06-04 13:01:28] -rw-r--r--. 2 boinc boinc     15093 Jun  4 08:55 start_atlas.sh
[2025-06-04 13:01:28] drwxrwx--x. 2 boinc boinc        68 Jun  4 08:55 shared
[2025-06-04 13:01:28] -rw-r--r--. 2 boinc boinc    508875 Jun  4 08:55 input.tar.gz
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc         0 Jun  4 08:55 boinc_lockfile
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc      2525 Jun  4 08:56 pandaJob.out
[2025-06-04 13:01:28] -rw-------. 1 boinc boinc    986745 Jun  4 08:59 agis_schedconf.cvmfs.json
[2025-06-04 13:01:28] drwx------. 4 boinc boinc      4096 Jun  4 08:59 pilot3
[2025-06-04 13:01:28] -rw-------. 1 boinc boinc 180926935 Jun  4 12:51 HITS.45006595._043451.pool.root.1
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc       531 Jun  4 12:52 boinc_task_state.xml
[2025-06-04 13:01:28] -rw-------. 1 boinc boinc      1013 Jun  4 12:53 memory_monitor_summary.json
[2025-06-04 13:01:28] -rw-------. 1 boinc boinc   1603667 Jun  4 12:53 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:01:28] -rw-------. 1 boinc boinc    374147 Jun  4 12:53 log.45006595._043451.job.log.tgz.1
[2025-06-04 13:01:28] -rw-------. 1 boinc boinc        95 Jun  4 12:54 pilot_heartbeat.json
[2025-06-04 13:01:28] -rw-------. 1 boinc boinc      7687 Jun  4 12:54 heartbeat.json
[2025-06-04 13:01:28] -rw-------. 1 boinc boinc      4611 Jun  4 12:55 pilotlog.txt
[2025-06-04 13:01:28] -rw-------. 1 boinc boinc   1197798 Jun  4 12:55 log.45006595._043451.job.log.1
[2025-06-04 13:01:28] -rw-------. 1 boinc boinc       357 Jun  4 12:55 output.list
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc       620 Jun  4 12:55 runtime_log
[2025-06-04 13:01:28] -rw-------. 1 boinc boinc   1587200 Jun  4 12:55 result.tar.gz
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc      8659 Jun  4 12:55 runtime_log.err
[2025-06-04 13:01:28] -rw-------. 1 boinc boinc       657 Jun  4 12:55 0zDNDmQEmg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlrlKDmEthCQo.diag
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc        28 Jun  4 13:01 wrapper_checkpoint.txt
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc      8192 Jun  4 13:01 boinc_mmap_file
[2025-06-04 13:01:28] -rw-r--r--. 1 boinc boinc     20609 Jun  4 13:01 stderr.txt
[2025-06-04 13:01:28] HITS file was successfully produced:
[2025-06-04 13:01:29] -rw-------. 1 boinc boinc 180926935 Jun  4 12:51 shared/HITS.pool.root.1
[2025-06-04 13:01:29]  *** Contents of shared directory: ***
[2025-06-04 13:01:29] total 390568
[2025-06-04 13:01:29] -rw-r--r--. 2 boinc boinc 216894554 Jun  4 08:55 ATLAS.root_0
[2025-06-04 13:01:29] -rw-r--r--. 2 boinc boinc     15093 Jun  4 08:55 start_atlas.sh
[2025-06-04 13:01:29] -rw-r--r--. 2 boinc boinc    508875 Jun  4 08:55 input.tar.gz
[2025-06-04 13:01:29] -rw-------. 1 boinc boinc 180926935 Jun  4 12:51 HITS.pool.root.1
[2025-06-04 13:01:29] -rw-------. 1 boinc boinc   1587200 Jun  4 12:55 result.tar.gz
13:01:30 (28101): run_atlas exited; CPU time 50938.161398
13:01:30 (28101): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN