Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
11:22:46 (77993): wrapper (7.7.26015): starting
11:22:46 (77993): wrapper: running run_atlas (--nthreads 3)
[2025-06-04 11:22:46] Arguments: --nthreads 3
[2025-06-04 11:22:46] Threads: 3
[2025-06-04 11:22:46] Checking for CVMFS
[2025-06-04 11:22:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:22:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:22:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:22:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:22:47] 2.9.2.0 2899 215 57072 146775 1 55 32055104 36864000 0 130560 0 199990 99.993 75341 55932 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-04 11:22:47] CVMFS is ok
[2025-06-04 11:22:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 11:22:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 11:22:47] Further information can be found at the LHC@home message board.
[2025-06-04 11:22:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:22:47] Checking for apptainer binary...
[2025-06-04 11:22:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:22:47] Running /usr/bin/apptainer --version
[2025-06-04 11:22:47] apptainer version 1.3.6-6.1
[2025-06-04 11:22:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:22:47] magicA246
[2025-06-04 11:22:47] apptainer works
[2025-06-04 11:22:47] Set ATHENA_PROC_NUMBER=3
[2025-06-04 11:22:47] Set ATHENA_CORE_NUMBER=3
[2025-06-04 11:22:47] Starting ATLAS job with PandaID=6677977877
[2025-06-04 11:22:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 12:34:39]  *** The last 200 lines of the pilot log: ***
[2025-06-04 12:34:39]  guid=464ddf2b-28ef-40b3-86ef-afcd7ece769d
[2025-06-04 12:34:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 12:34:39]  is_altstaged=None
[2025-06-04 12:34:39]  is_tar=False
[2025-06-04 12:34:39]  lfn=log.45006595._043607.job.log.tgz.1
[2025-06-04 12:34:39]  mtime=0
[2025-06-04 12:34:39]  protocol_id=None
[2025-06-04 12:34:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 12:34:39]  replicas=None
[2025-06-04 12:34:39]  scope=mc23_13p6TeV
[2025-06-04 12:34:39]  status=None
[2025-06-04 12:34:39]  status_code=0
[2025-06-04 12:34:39]  storage_token=
[2025-06-04 12:34:39]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6677977877/log.45006595._043607.job.log.tgz.1
[2025-06-04 12:34:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/3a/log.45006595._043607.job.log.tgz.1
[2025-06-04 12:34:39]  workdir=None
[2025-06-04 12:34:39] ]
[2025-06-04 12:34:39] 2025-06-04 10:34:16,253 | INFO     | transferring file log.45006595._043607.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6677977877/log.45006595._043607.job.log.tgz.1 to /local/data/boinc/
[2025-06-04 12:34:39] 2025-06-04 10:34:16,253 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6677977877/log.45006595._043607.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0436
[2025-06-04 12:34:39] 2025-06-04 10:34:16,267 | INFO     | adding to output.list: log.45006595._043607.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/3a/log.45006595._043607.job.log.tg
[2025-06-04 12:34:39] 2025-06-04 10:34:16,268 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 12:34:39] 2025-06-04 10:34:16,268 | INFO     | summary of transferred files:
[2025-06-04 12:34:39] 2025-06-04 10:34:16,268 | INFO     |  -- lfn=log.45006595._043607.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 12:34:39] 2025-06-04 10:34:16,268 | INFO     | stage-out finished correctly
[2025-06-04 12:34:39] 2025-06-04 10:34:17,123 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 12:34:39] 2025-06-04 10:34:17,155 | INFO     | job 6677977877 has state=finished
[2025-06-04 12:34:39] 2025-06-04 10:34:17,156 | INFO     | preparing for final server update for job 6677977877 in state='finished'
[2025-06-04 12:34:39] 2025-06-04 10:34:17,156 | INFO     | this job has now completed (state=finished)
[2025-06-04 12:34:39] 2025-06-04 10:34:17,156 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 12:34:39] 2025-06-04 10:34:17,156 | INFO     | log transfer has been attempted: DONE
[2025-06-04 12:34:39] 2025-06-04 10:34:17,156 | INFO     | job 6677977877 has finished - writing final server update
[2025-06-04 12:34:39] 2025-06-04 10:34:17,156 | INFO     | total number of processed events: 400 (read)
[2025-06-04 12:34:39] 2025-06-04 10:34:17,157 | INFO     | executing command: lscpu
[2025-06-04 12:34:39] 2025-06-04 10:34:17,172 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 12:34:39] 2025-06-04 10:34:19,707 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 12:34:39] 2025-06-04 10:34:19,708 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6677977877/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 12:34:39] 2025-06-04 10:34:19,708 | INFO     | extracted standard info from prmon json
[2025-06-04 12:34:39] 2025-06-04 10:34:19,708 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 12:34:39] 2025-06-04 10:34:19,708 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 12:34:39] 2025-06-04 10:34:19,708 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 12:34:39] 2025-06-04 10:34:19,708 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 12:34:39] 2025-06-04 10:34:19,709 | INFO     | fitting pss+swap vs Time
[2025-06-04 12:34:39] 2025-06-04 10:34:19,709 | INFO     | sum of square deviations: 77515872.0
[2025-06-04 12:34:39] 2025-06-04 10:34:19,709 | INFO     | sum of deviations: -1810258326.0
[2025-06-04 12:34:39] 2025-06-04 10:34:19,709 | INFO     | mean x: 1749031189.0
[2025-06-04 12:34:39] 2025-06-04 10:34:19,709 | INFO     | mean y: 2602322.015873016
[2025-06-04 12:34:39] 2025-06-04 10:34:19,709 | INFO     | -- intersect: 40848408356.6939
[2025-06-04 12:34:39] 2025-06-04 10:34:19,709 | INFO     | intersect: 40848408356.6939
[2025-06-04 12:34:39] 2025-06-04 10:34:19,709 | INFO     | chi2: 0.04367276696212856
[2025-06-04 12:34:39] 2025-06-04 10:34:19,709 | INFO     | -- intersect: 40848408356.6939
[2025-06-04 12:34:39] 2025-06-04 10:34:19,710 | INFO     | current memory leak: -23.35 B/s (using 63 data points, chi2=0.04)
[2025-06-04 12:34:39] 2025-06-04 10:34:19,710 | INFO     | ..............................
[2025-06-04 12:34:39] 2025-06-04 10:34:19,710 | INFO     | . Timing measurements:
[2025-06-04 12:34:39] 2025-06-04 10:34:19,710 | INFO     | . get job = 0 s
[2025-06-04 12:34:39] 2025-06-04 10:34:19,710 | INFO     | . initial setup = 1 s
[2025-06-04 12:34:39] 2025-06-04 10:34:19,710 | INFO     | . payload setup = 3 s
[2025-06-04 12:34:39] 2025-06-04 10:34:19,710 | INFO     | . stage-in = 0 s
[2025-06-04 12:34:39] 2025-06-04 10:34:19,710 | INFO     | . payload execution = 4262 s
[2025-06-04 12:34:39] 2025-06-04 10:34:19,710 | INFO     | . stage-out = 0 s
[2025-06-04 12:34:39] 2025-06-04 10:34:19,710 | INFO     | . log creation = 0 s
[2025-06-04 12:34:39] 2025-06-04 10:34:19,710 | INFO     | ..............................
[2025-06-04 12:34:39] 2025-06-04 10:34:19,840 | INFO     | 
[2025-06-04 12:34:39] 2025-06-04 10:34:19,840 | INFO     | job summary report
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | --------------------------------------------------
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | PanDA job id: 6677977877
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | task id: 45006595
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | errors: (none)
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | pilot state: finished 
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | transexitcode: 0
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | exeerrorcode: 0
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | exeerrordiag: 
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | exitcode: 0
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | exitmsg: OK
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | cpuconsumptiontime: 12147 s
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | nevents: 400
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | neventsw: 0
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | pid: 88109
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | pgrp: 88109
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | corecount: 3
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | event service: False
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | sizes: {0: 2405187, 2: 2405393, 10: 2405421, 4269: 2431497, 4270: 2440444, 4271: 2440500, 4273: 2440798}
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | --------------------------------------------------
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | 
[2025-06-04 12:34:39] 2025-06-04 10:34:19,841 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-04 12:34:39] 2025-06-04 10:34:19,856 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,856 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,856 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,856 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,856 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,856 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,856 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | job 6677977877 has completed (purged errors)
[2025-06-04 12:34:39] 2025-06-04 10:34:19,857 | INFO     | overall cleanup function is called
[2025-06-04 12:34:39] 2025-06-04 10:34:20,864 | INFO     | --- collectZombieJob: --- 10, [88109]
[2025-06-04 12:34:39] 2025-06-04 10:34:20,864 | INFO     | zombie collector waiting for pid 88109
[2025-06-04 12:34:39] 2025-06-04 10:34:20,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 12:34:39] 2025-06-04 10:34:20,864 | INFO     | collected zombie processes
[2025-06-04 12:34:39] 2025-06-04 10:34:20,864 | INFO     | will attempt to kill all subprocesses of pid=88109
[2025-06-04 12:34:39] 2025-06-04 10:34:20,911 | INFO     | process IDs to be killed: [88109] (in reverse order)
[2025-06-04 12:34:39] 2025-06-04 10:34:20,937 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 12:34:39] 2025-06-04 10:34:20,937 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 12:34:39] 2025-06-04 10:34:20,939 | INFO     | did not find any defunct processes belonging to 88109
[2025-06-04 12:34:39] 2025-06-04 10:34:20,940 | INFO     | did not find any defunct processes belonging to 88109
[2025-06-04 12:34:39] 2025-06-04 10:34:20,940 | INFO     | ready for new job
[2025-06-04 12:34:39] 2025-06-04 10:34:20,940 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 12:34:39] 2025-06-04 10:34:20,941 | INFO     | **************************************
[2025-06-04 12:34:39] 2025-06-04 10:34:20,941 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 12:34:39] 2025-06-04 10:34:20,941 | INFO     | **************************************
[2025-06-04 12:34:39] 2025-06-04 10:34:20,941 | INFO     | 
[2025-06-04 12:34:39] 2025-06-04 10:34:20,941 | INFO     | architecture information:
[2025-06-04 12:34:39] 2025-06-04 10:34:20,941 | INFO     | executing command: cat /etc/os-release
[2025-06-04 12:34:39] 2025-06-04 10:34:20,950 | INFO     | cat /etc/os-release:
[2025-06-04 12:34:39] NAME="CentOS Linux"
[2025-06-04 12:34:39] VERSION="7 (Core)"
[2025-06-04 12:34:39] ID="centos"
[2025-06-04 12:34:39] ID_LIKE="rhel fedora"
[2025-06-04 12:34:39] VERSION_ID="7"
[2025-06-04 12:34:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 12:34:39] ANSI_COLOR="0;31"
[2025-06-04 12:34:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 12:34:39] HOME_URL="https://www.centos.org/"
[2025-06-04 12:34:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 12:34:39] 
[2025-06-04 12:34:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 12:34:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 12:34:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 12:34:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 12:34:39] 
[2025-06-04 12:34:39] 2025-06-04 10:34:20,951 | INFO     | **************************************
[2025-06-04 12:34:39] 2025-06-04 10:34:21,120 | WARNING  | process 88109 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 12:34:39] 2025-06-04 10:34:21,151 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 12:34:39] 2025-06-04 10:34:21,190 | INFO     | number of running child processes to parent process 88109: 1
[2025-06-04 12:34:39] 2025-06-04 10:34:21,190 | INFO     | maximum number of monitored processes: 6
[2025-06-04 12:34:39] 2025-06-04 10:34:21,190 | INFO     | aborting job monitoring since job object (job id=6677977877) has expired
[2025-06-04 12:34:39] 2025-06-04 10:34:21,454 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-04 12:34:39] 2025-06-04 10:34:21,467 | INFO     | sufficient remaining disk space (368014524416 B)
[2025-06-04 12:34:39] 2025-06-04 10:34:21,467 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 12:34:39] 2025-06-04 10:34:21,467 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 12:34:39] 2025-06-04 10:34:21,467 | INFO     | update_server=False
[2025-06-04 12:34:39] 2025-06-04 10:34:21,468 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 12:34:39] 2025-06-04 10:34:21,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:34:39] 2025-06-04 10:34:21,468 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 12:34:39] 2025-06-04 10:34:21,468 | INFO     | will abort loop
[2025-06-04 12:34:39] 2025-06-04 10:34:21,809 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 12:34:39] 2025-06-04 10:34:21,910 | INFO     | all job control threads have been joined
[2025-06-04 12:34:39] 2025-06-04 10:34:22,107 | INFO     | all data control threads have been joined
[2025-06-04 12:34:39] 2025-06-04 10:34:22,413 | INFO     | all payload control threads have been joined
[2025-06-04 12:34:39] 2025-06-04 10:34:22,473 | INFO     | [job] queue monitor thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:22,473 | INFO     | [job] job monitor thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:22,473 | INFO     | [job] retrieve thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:22,477 | INFO     | PID=81625 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 12:34:39] 2025-06-04 10:34:22,477 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 12:34:39] 2025-06-04 10:34:22,477 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 12:34:39] 2025-06-04 10:34:22,477 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 12:34:39] 2025-06-04 10:34:22,531 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:22,733 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:22,916 | INFO     | [job] control thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:23,113 | INFO     | [data] control thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:23,162 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 12:34:39] 2025-06-04 10:34:23,163 | INFO     | [payload] validate_post thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:23,315 | INFO     | [payload] failed_post thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:23,419 | INFO     | [payload] control thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:23,562 | INFO     | [data] copytool_in thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:23,815 | INFO     | [data] copytool_out thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:23,889 | INFO     | [job] validate thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:23,962 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:27,170 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:31,843 | INFO     | job.realtimelogging is not enabled
[2025-06-04 12:34:39] 2025-06-04 10:34:32,849 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 12:34:39] 2025-06-04 10:34:34,426 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931237914432)>', '<ExcThread(monitor, started 139930739128064)>']
[2025-06-04 12:34:39] 2025-06-04 10:34:34,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 12:34:39] 2025-06-04 10:34:34,542 | INFO     | [monitor] control thread has ended
[2025-06-04 12:34:39] 2025-06-04 10:34:39,452 | INFO     | all workflow threads have been joined
[2025-06-04 12:34:39] 2025-06-04 10:34:39,452 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 12:34:39] 2025-06-04 10:34:39,452 | INFO     | traces error code: 0
[2025-06-04 12:34:39] 2025-06-04 10:34:39,453 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 12:34:39] 2025-06-04 10:34:39,507 [wrapper] ==== pilot stdout END ====
[2025-06-04 12:34:39] 2025-06-04 10:34:39,509 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 12:34:39] 2025-06-04 10:34:39,512 [wrapper] pilotpid: 81625
[2025-06-04 12:34:39] 2025-06-04 10:34:39,514 [wrapper] Pilot exit status: 0
[2025-06-04 12:34:39] 2025-06-04 10:34:39,522 [wrapper] pandaids: 6677977877
[2025-06-04 12:34:39] 2025-06-04 10:34:39,540 [wrapper] cleanup supervisor_pilot   97638 81626
[2025-06-04 12:34:39] 2025-06-04 10:34:39,543 [wrapper] Test setup, not cleaning
[2025-06-04 12:34:39] 2025-06-04 10:34:39,545 [wrapper] apfmon messages muted
[2025-06-04 12:34:39] 2025-06-04 10:34:39,548 [wrapper] ==== wrapper stdout END ====
[2025-06-04 12:34:39] 2025-06-04 10:34:39,550 [wrapper] ==== wrapper stderr END ====
[2025-06-04 12:34:39]  *** Error codes and diagnostics ***
[2025-06-04 12:34:39]     "exeErrorCode": 0,
[2025-06-04 12:34:39]     "exeErrorDiag": "",
[2025-06-04 12:34:39]     "pilotErrorCode": 0,
[2025-06-04 12:34:39]     "pilotErrorDiag": "",
[2025-06-04 12:34:39]  *** Listing of results directory ***
[2025-06-04 12:34:39] total 388084
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc    495897 Jun  3 20:57 pilot3.tar.gz
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc      5111 Jun  3 21:16 queuedata.json
[2025-06-04 12:34:39] -rwx------ 1 boinc boinc     37140 Jun  3 21:18 runpilot2-wrapper.sh
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc       100 Jun  4 11:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 12:34:39] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 11:22 run_atlas
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc       105 Jun  4 11:22 job.xml
[2025-06-04 12:34:39] -rw-r--r-- 2 boinc boinc 216037154 Jun  4 11:22 EVNT.45006593._001748.pool.root.1
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc      6931 Jun  4 11:22 init_data.xml
[2025-06-04 12:34:39] drwxrwx--x 2 boinc boinc      4096 Jun  4 11:22 shared
[2025-06-04 12:34:39] -rw-r--r-- 2 boinc boinc    508880 Jun  4 11:22 input.tar.gz
[2025-06-04 12:34:39] -rw-r--r-- 2 boinc boinc     15093 Jun  4 11:22 start_atlas.sh
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc         0 Jun  4 11:22 boinc_lockfile
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc      2525 Jun  4 11:22 pandaJob.out
[2025-06-04 12:34:39] -rw------- 1 boinc boinc    986766 Jun  4 11:22 agis_schedconf.cvmfs.json
[2025-06-04 12:34:39] -rw------- 1 boinc boinc   1603667 Jun  4 11:22 agis_ddmendpoints.agis.ALL.json
[2025-06-04 12:34:39] drwx------ 4 boinc boinc      4096 Jun  4 11:22 pilot3
[2025-06-04 12:34:39] -rw------- 1 boinc boinc 176230273 Jun  4 12:33 HITS.45006595._043607.pool.root.1
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc       529 Jun  4 12:34 boinc_task_state.xml
[2025-06-04 12:34:39] -rw------- 1 boinc boinc      1017 Jun  4 12:34 memory_monitor_summary.json
[2025-06-04 12:34:39] -rw------- 1 boinc boinc        95 Jun  4 12:34 pilot_heartbeat.json
[2025-06-04 12:34:39] -rw------- 1 boinc boinc    221409 Jun  4 12:34 log.45006595._043607.job.log.tgz.1
[2025-06-04 12:34:39] -rw------- 1 boinc boinc      7650 Jun  4 12:34 heartbeat.json
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc      8192 Jun  4 12:34 boinc_mmap_file
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc        27 Jun  4 12:34 wrapper_checkpoint.txt
[2025-06-04 12:34:39] -rw------- 1 boinc boinc      5266 Jun  4 12:34 pilotlog.txt
[2025-06-04 12:34:39] -rw------- 1 boinc boinc    423914 Jun  4 12:34 log.45006595._043607.job.log.1
[2025-06-04 12:34:39] -rw------- 1 boinc boinc       357 Jun  4 12:34 output.list
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc       620 Jun  4 12:34 runtime_log
[2025-06-04 12:34:39] -rw------- 1 boinc boinc    665600 Jun  4 12:34 result.tar.gz
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc      8748 Jun  4 12:34 runtime_log.err
[2025-06-04 12:34:39] -rw------- 1 boinc boinc       661 Jun  4 12:34 pWYNDmSKmg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmHkZKDmYNZ3Dn.diag
[2025-06-04 12:34:39] -rw-r--r-- 1 boinc boinc     21312 Jun  4 12:34 stderr.txt
[2025-06-04 12:34:39] HITS file was successfully produced:
[2025-06-04 12:34:39] -rw------- 1 boinc boinc 176230273 Jun  4 12:33 shared/HITS.pool.root.1
[2025-06-04 12:34:39]  *** Contents of shared directory: ***
[2025-06-04 12:34:39] total 384252
[2025-06-04 12:34:39] -rw-r--r-- 2 boinc boinc 216037154 Jun  4 11:22 ATLAS.root_0
[2025-06-04 12:34:39] -rw-r--r-- 2 boinc boinc    508880 Jun  4 11:22 input.tar.gz
[2025-06-04 12:34:39] -rw-r--r-- 2 boinc boinc     15093 Jun  4 11:22 start_atlas.sh
[2025-06-04 12:34:39] -rw------- 1 boinc boinc 176230273 Jun  4 12:33 HITS.pool.root.1
[2025-06-04 12:34:39] -rw------- 1 boinc boinc    665600 Jun  4 12:34 result.tar.gz
12:34:41 (77993): run_atlas exited; CPU time 12160.689004
12:34:41 (77993): called boinc_finish(0)

</stderr_txt>
]]>

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