Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:14:06 (14970): wrapper (7.7.26015): starting
11:14:06 (14970): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 11:14:06] Arguments: --nthreads 8
[2025-06-04 11:14:06] Threads: 8
[2025-06-04 11:14:06] Checking for CVMFS
[2025-06-04 11:14:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:14:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:14:08] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:14:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:14:09] 2.11.2.0 31392 33026 96052 146773 1 112 14950590 25165824 3519 130560 0 17575598 99.760 20483283 2058 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 11:14:09] CVMFS is ok
[2025-06-04 11:14:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:14:09] Checking for apptainer binary...
[2025-06-04 11:14:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:14:09] Running /usr/bin/apptainer --version
[2025-06-04 11:14:09] apptainer version 1.3.2-1.el7
[2025-06-04 11:14:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:15:52] cg-vwn267.simple-grid.lan
[2025-06-04 11:15:52] apptainer works
[2025-06-04 11:15:52] Set ATHENA_PROC_NUMBER=8
[2025-06-04 11:15:52] Set ATHENA_CORE_NUMBER=8
[2025-06-04 11:15:52] Starting ATLAS job with PandaID=6677978353
[2025-06-04 11:15:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 15:26:13]  *** The last 200 lines of the pilot log: ***
[2025-06-04 15:26:13] 2025-06-04 13:14:28,285 | INFO     | extracted standard info from prmon json
[2025-06-04 15:26:13] 2025-06-04 13:14:28,285 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 15:26:13] 2025-06-04 13:14:28,285 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 15:26:13] 2025-06-04 13:14:28,286 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 15:26:13] 2025-06-04 13:14:28,286 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 15:26:13] 2025-06-04 13:14:28,291 | INFO     | fitting pss+swap vs Time
[2025-06-04 15:26:13] 2025-06-04 13:14:28,296 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 15:26:13] 2025-06-04 13:14:28,299 | INFO     | sum of deviations: 25835462248.000015
[2025-06-04 15:26:13] 2025-06-04 13:14:28,299 | INFO     | mean x: 1749035983.5
[2025-06-04 15:26:13] 2025-06-04 13:14:28,299 | INFO     | mean y: 2476780.738738739
[2025-06-04 15:26:13] 2025-06-04 13:14:28,299 | INFO     | -- intersect: -13316977934.962263
[2025-06-04 15:26:13] 2025-06-04 13:14:28,299 | INFO     | intersect: -13316977934.962263
[2025-06-04 15:26:13] 2025-06-04 13:14:28,300 | INFO     | chi2: 6.406652488466156
[2025-06-04 15:26:13] 2025-06-04 13:14:28,300 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,302 | INFO     | sum of deviations: 40338325891.000015
[2025-06-04 15:26:13] 2025-06-04 13:14:28,302 | INFO     | mean x: 1749035831.0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,302 | INFO     | mean y: 2486467.884792627
[2025-06-04 15:26:13] 2025-06-04 13:14:28,302 | INFO     | -- intersect: -22264845015.213528
[2025-06-04 15:26:13] 2025-06-04 13:14:28,302 | INFO     | intersect: -22264845015.213528
[2025-06-04 15:26:13] 2025-06-04 13:14:28,303 | INFO     | chi2: 5.695202813132096
[2025-06-04 15:26:13] 2025-06-04 13:14:28,303 | INFO     | current chi2=5.695202813132096 (change=11.104858217530557 %)
[2025-06-04 15:26:13] 2025-06-04 13:14:28,303 | INFO     | right removable region: 216
[2025-06-04 15:26:13] 2025-06-04 13:14:28,304 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,305 | INFO     | sum of deviations: -49444293651.0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,306 | INFO     | mean x: 1749036136.0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,306 | INFO     | mean y: 2527933.9677419355
[2025-06-04 15:26:13] 2025-06-04 13:14:28,306 | INFO     | -- intersect: 27296488314.042797
[2025-06-04 15:26:13] 2025-06-04 13:14:28,306 | INFO     | intersect: 27296488314.042797
[2025-06-04 15:26:13] 2025-06-04 13:14:28,306 | INFO     | chi2: 1.8522339460827455
[2025-06-04 15:26:13] 2025-06-04 13:14:28,307 | INFO     | current chi2=1.8522339460827455 (change=71.08889627746616 %)
[2025-06-04 15:26:13] 2025-06-04 13:14:28,307 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,309 | INFO     | sum of deviations: -75977238896.5
[2025-06-04 15:26:13] 2025-06-04 13:14:28,309 | INFO     | mean x: 1749036288.5
[2025-06-04 15:26:13] 2025-06-04 13:14:28,309 | INFO     | mean y: 2546684.080188679
[2025-06-04 15:26:13] 2025-06-04 13:14:28,309 | INFO     | -- intersect: 44981151839.427864
[2025-06-04 15:26:13] 2025-06-04 13:14:28,309 | INFO     | intersect: 44981151839.427864
[2025-06-04 15:26:13] 2025-06-04 13:14:28,310 | INFO     | chi2: 1.0259320692849778
[2025-06-04 15:26:13] 2025-06-04 13:14:28,310 | INFO     | current chi2=1.0259320692849778 (change=44.61109670003068 %)
[2025-06-04 15:26:13] 2025-06-04 13:14:28,310 | INFO     | sum of square deviations: 2750295288.0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,312 | INFO     | sum of deviations: -74506737303.0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,312 | INFO     | mean x: 1749036441.0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,312 | INFO     | mean y: 2545544.492753623
[2025-06-04 15:26:13] 2025-06-04 13:14:28,312 | INFO     | -- intersect: 47384729999.93915
[2025-06-04 15:26:13] 2025-06-04 13:14:28,312 | INFO     | intersect: 47384729999.93915
[2025-06-04 15:26:13] 2025-06-04 13:14:28,313 | INFO     | chi2: 1.0056524101589552
[2025-06-04 15:26:13] 2025-06-04 13:14:28,313 | INFO     | current chi2=1.0056524101589552 (change=1.9767058398083288 %)
[2025-06-04 15:26:13] 2025-06-04 13:14:28,313 | INFO     | left removable region: 30
[2025-06-04 15:26:13] 2025-06-04 13:14:28,313 | INFO     | sum of square deviations: 1995283922.5
[2025-06-04 15:26:13] 2025-06-04 13:14:28,314 | INFO     | sum of deviations: -39806052579.0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,315 | INFO     | mean x: 1749036715.5
[2025-06-04 15:26:13] 2025-06-04 13:14:28,315 | INFO     | mean y: 2541564.9139784947
[2025-06-04 15:26:13] 2025-06-04 13:14:28,315 | INFO     | -- intersect: 34895945292.92125
[2025-06-04 15:26:13] 2025-06-04 13:14:28,315 | INFO     | intersect: 34895945292.92125
[2025-06-04 15:26:13] 2025-06-04 13:14:28,315 | INFO     | chi2: 0.1954232656257987
[2025-06-04 15:26:13] 2025-06-04 13:14:28,316 | INFO     | -- intersect: 34895945292.92125
[2025-06-04 15:26:13] 2025-06-04 13:14:28,324 | INFO     | current memory leak: -19.95 B/s (using 186 data points, chi2=0.20)
[2025-06-04 15:26:13] 2025-06-04 13:14:28,325 | INFO     | ..............................
[2025-06-04 15:26:13] 2025-06-04 13:14:28,325 | INFO     | . Timing measurements:
[2025-06-04 15:26:13] 2025-06-04 13:14:28,325 | INFO     | . get job = 0 s
[2025-06-04 15:26:13] 2025-06-04 13:14:28,325 | INFO     | . initial setup = 11 s
[2025-06-04 15:26:13] 2025-06-04 13:14:28,325 | INFO     | . payload setup = 172 s
[2025-06-04 15:26:13] 2025-06-04 13:14:28,325 | INFO     | . stage-in = 0 s
[2025-06-04 15:26:13] 2025-06-04 13:14:28,326 | INFO     | . payload execution = 13671 s
[2025-06-04 15:26:13] 2025-06-04 13:14:28,326 | INFO     | . stage-out = 3 s
[2025-06-04 15:26:13] 2025-06-04 13:14:28,326 | INFO     | . log creation = 1 s
[2025-06-04 15:26:13] 2025-06-04 13:14:28,326 | INFO     | ..............................
[2025-06-04 15:26:13] 2025-06-04 13:14:28,484 | INFO     | 
[2025-06-04 15:26:13] 2025-06-04 13:14:28,484 | INFO     | job summary report
[2025-06-04 15:26:13] 2025-06-04 13:14:28,484 | INFO     | --------------------------------------------------
[2025-06-04 15:26:13] 2025-06-04 13:14:28,484 | INFO     | PanDA job id: 6677978353
[2025-06-04 15:26:13] 2025-06-04 13:14:28,484 | INFO     | task id: 45006595
[2025-06-04 15:26:13] 2025-06-04 13:14:28,485 | INFO     | errors: (none)
[2025-06-04 15:26:13] 2025-06-04 13:14:28,485 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 15:26:13] 2025-06-04 13:14:28,485 | INFO     | pilot state: finished 
[2025-06-04 15:26:13] 2025-06-04 13:14:28,485 | INFO     | transexitcode: 0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,485 | INFO     | exeerrorcode: 0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,485 | INFO     | exeerrordiag: 
[2025-06-04 15:26:13] 2025-06-04 13:14:28,485 | INFO     | exitcode: 0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,485 | INFO     | exitmsg: OK
[2025-06-04 15:26:13] 2025-06-04 13:14:28,485 | INFO     | cpuconsumptiontime: 48719 s
[2025-06-04 15:26:13] 2025-06-04 13:14:28,485 | INFO     | nevents: 400
[2025-06-04 15:26:13] 2025-06-04 13:14:28,485 | INFO     | neventsw: 0
[2025-06-04 15:26:13] 2025-06-04 13:14:28,486 | INFO     | pid: 29277
[2025-06-04 15:26:13] 2025-06-04 13:14:28,486 | INFO     | pgrp: 29277
[2025-06-04 15:26:13] 2025-06-04 13:14:28,486 | INFO     | corecount: 8
[2025-06-04 15:26:13] 2025-06-04 13:14:28,486 | INFO     | event service: False
[2025-06-04 15:26:13] 2025-06-04 13:14:28,486 | INFO     | sizes: {0: 2405184, 1: 2405212, 12: 2405212, 23: 2405240, 33: 2405268, 44: 2405324, 55: 2405480, 66: 2405508, 76: 2405536, 87: 2405592, 96: 2405826, 98: 2406134, 1
[2025-06-04 15:26:13] 2025-06-04 13:14:28,486 | INFO     | --------------------------------------------------
[2025-06-04 15:26:13] 2025-06-04 13:14:28,486 | INFO     | 
[2025-06-04 15:26:13] 2025-06-04 13:14:28,486 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-04 15:26:13] 2025-06-04 13:14:28,815 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,816 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,816 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,816 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,816 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,816 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,816 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,817 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,817 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,817 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,817 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,817 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,817 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,817 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,817 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,818 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,818 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,818 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 15:26:13] 2025-06-04 13:14:28,818 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,818 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 15:26:13] 2025-06-04 13:14:28,818 | INFO     | job 6677978353 has completed (purged errors)
[2025-06-04 15:26:13] 2025-06-04 13:14:28,818 | INFO     | overall cleanup function is called
[2025-06-04 15:26:13] 2025-06-04 13:14:29,828 | INFO     | --- collectZombieJob: --- 10, [29277]
[2025-06-04 15:26:13] 2025-06-04 13:14:29,828 | INFO     | zombie collector waiting for pid 29277
[2025-06-04 15:26:13] 2025-06-04 13:14:29,828 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 15:26:13] 2025-06-04 13:14:29,829 | INFO     | collected zombie processes
[2025-06-04 15:26:13] 2025-06-04 13:14:29,829 | INFO     | will attempt to kill all subprocesses of pid=29277
[2025-06-04 15:26:13] 2025-06-04 13:14:29,968 | INFO     | process IDs to be killed: [29277] (in reverse order)
[2025-06-04 15:26:13] 2025-06-04 13:14:31,096 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 15:26:13] 2025-06-04 13:14:31,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 15:26:13] 2025-06-04 13:14:31,101 | INFO     | did not find any defunct processes belonging to 29277
[2025-06-04 15:26:13] 2025-06-04 13:14:31,104 | INFO     | did not find any defunct processes belonging to 29277
[2025-06-04 15:26:13] 2025-06-04 13:14:31,104 | INFO     | ready for new job
[2025-06-04 15:26:13] 2025-06-04 13:14:31,104 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 15:26:13] 2025-06-04 13:14:31,106 | INFO     | **************************************
[2025-06-04 15:26:13] 2025-06-04 13:14:31,107 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 15:26:13] 2025-06-04 13:14:31,107 | INFO     | **************************************
[2025-06-04 15:26:13] 2025-06-04 13:14:31,107 | INFO     | 
[2025-06-04 15:26:13] 2025-06-04 13:14:31,107 | INFO     | pilot is running in a VM
[2025-06-04 15:26:13] 2025-06-04 13:14:31,108 | INFO     | architecture information:
[2025-06-04 15:26:13] 2025-06-04 13:14:31,126 | INFO     | executing command: cat /etc/os-release
[2025-06-04 15:26:13] 2025-06-04 13:14:31,396 | INFO     | cat /etc/os-release:
[2025-06-04 15:26:13] NAME="CentOS Linux"
[2025-06-04 15:26:13] VERSION="7 (Core)"
[2025-06-04 15:26:13] ID="centos"
[2025-06-04 15:26:13] ID_LIKE="rhel fedora"
[2025-06-04 15:26:13] VERSION_ID="7"
[2025-06-04 15:26:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 15:26:13] ANSI_COLOR="0;31"
[2025-06-04 15:26:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 15:26:13] HOME_URL="https://www.centos.org/"
[2025-06-04 15:26:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 15:26:13] 
[2025-06-04 15:26:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 15:26:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 15:26:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 15:26:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 15:26:13] 
[2025-06-04 15:26:13] 2025-06-04 13:14:31,397 | INFO     | **************************************
[2025-06-04 15:26:13] 2025-06-04 13:14:31,900 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-04 15:26:13] 2025-06-04 13:14:32,168 | INFO     | sufficient remaining disk space (496550019072 B)
[2025-06-04 15:26:13] 2025-06-04 13:14:32,168 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 15:26:13] 2025-06-04 13:14:32,168 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 15:26:13] 2025-06-04 13:14:32,168 | INFO     | update_server=False
[2025-06-04 15:26:13] 2025-06-04 13:14:32,169 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 15:26:13] 2025-06-04 13:14:32,175 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 15:26:13] 2025-06-04 13:14:32,175 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 15:26:13] 2025-06-04 13:14:32,176 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 15:26:13] 2025-06-04 13:14:32,176 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 15:26:13] 2025-06-04 13:14:32,196 | INFO     | all job control threads have been joined
[2025-06-04 15:26:13] 2025-06-04 13:14:32,364 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 15:26:13] 2025-06-04 13:14:32,575 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:26:13] 2025-06-04 13:14:32,575 | INFO     | aborting loop
[2025-06-04 15:26:13] 2025-06-04 13:14:32,629 | INFO     | all payload control threads have been joined
[2025-06-04 15:26:13] 2025-06-04 13:14:33,059 | INFO     | all data control threads have been joined
[2025-06-04 15:26:13] 2025-06-04 13:14:33,175 | INFO     | [job] retrieve thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:33,201 | INFO     | [job] control thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:33,384 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:33,385 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:33,387 | INFO     | [job] validate thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:33,501 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:26:13] 2025-06-04 13:14:33,530 | INFO     | [payload] validate_post thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:33,581 | INFO     | [job] job monitor thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:33,635 | INFO     | [payload] control thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:33,704 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:33,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 15:26:13] 2025-06-04 13:14:34,066 | INFO     | [data] control thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:34,371 | INFO     | [data] copytool_out thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:34,442 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:34,505 | INFO     | [data] copytool_in thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:34,507 | INFO     | [job] queue monitor thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:34,750 | INFO     | [payload] failed_post thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:37,925 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 15:26:13] 2025-06-04 13:14:38,907 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140458479814464)>', '<ExcThread(monitor, started 140457887647488)>']
[2025-06-04 15:26:13] 2025-06-04 13:14:39,218 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 15:26:13] 2025-06-04 13:14:39,218 | INFO     | [monitor] control thread has ended
[2025-06-04 15:26:13] 2025-06-04 13:14:43,933 | INFO     | all workflow threads have been joined
[2025-06-04 15:26:13] 2025-06-04 13:14:43,933 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 15:26:13] 2025-06-04 13:14:43,934 | INFO     | traces error code: 0
[2025-06-04 15:26:13] 2025-06-04 13:14:43,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 15:26:13] 2025-06-04 13:14:44,307 [wrapper] ==== pilot stdout END ====
[2025-06-04 15:26:13] 2025-06-04 13:14:44,398 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 15:26:13] 2025-06-04 13:14:44,492 [wrapper] pilotpid: 18701
[2025-06-04 15:26:13] 2025-06-04 13:14:44,615 [wrapper] Pilot exit status: 0
[2025-06-04 15:26:13] 2025-06-04 13:14:45,100 [wrapper] pandaids: 6677978353
[2025-06-04 15:26:13] 2025-06-04 13:14:45,988 [wrapper] cleanup supervisor_pilot 11158 18702
[2025-06-04 15:26:13] 2025-06-04 13:14:46,039 [wrapper] Test setup, not cleaning
[2025-06-04 15:26:13] 2025-06-04 13:14:46,155 [wrapper] apfmon messages muted
[2025-06-04 15:26:13] 2025-06-04 13:14:46,263 [wrapper] ==== wrapper stdout END ====
[2025-06-04 15:26:13] 2025-06-04 13:14:46,365 [wrapper] ==== wrapper stderr END ====
[2025-06-04 15:26:13]  *** Error codes and diagnostics ***
[2025-06-04 15:26:13]     "exeErrorCode": 0,
[2025-06-04 15:26:13]     "exeErrorDiag": "",
[2025-06-04 15:26:13]     "pilotErrorCode": 0,
[2025-06-04 15:26:13]     "pilotErrorDiag": "",
[2025-06-04 15:26:13]  *** Listing of results directory ***
[2025-06-04 15:26:13] total 390848
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc    495897 Jun  3 20:57 pilot3.tar.gz
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc      5111 Jun  3 21:20 queuedata.json
[2025-06-04 15:26:13] -rwx------. 1 boinc boinc     37140 Jun  3 21:20 runpilot2-wrapper.sh
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc       100 Jun  4 11:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 15:26:13] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 11:14 run_atlas
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc       105 Jun  4 11:14 job.xml
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc      6391 Jun  4 11:14 init_data.xml
[2025-06-04 15:26:13] -rw-r--r--. 2 boinc boinc 215222826 Jun  4 11:14 EVNT.45006593._001755.pool.root.1
[2025-06-04 15:26:13] -rw-r--r--. 2 boinc boinc     15093 Jun  4 11:14 start_atlas.sh
[2025-06-04 15:26:13] drwxrwx--x. 2 boinc boinc        68 Jun  4 11:14 shared
[2025-06-04 15:26:13] -rw-r--r--. 2 boinc boinc    508881 Jun  4 11:14 input.tar.gz
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc         0 Jun  4 11:14 boinc_lockfile
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc      2525 Jun  4 11:15 pandaJob.out
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc    986774 Jun  4 11:18 agis_schedconf.cvmfs.json
[2025-06-04 15:26:13] drwx------. 4 boinc boinc      4096 Jun  4 11:18 pilot3
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc 177987787 Jun  4 15:11 HITS.45006595._043794.pool.root.1
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc       531 Jun  4 15:11 boinc_task_state.xml
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc      1016 Jun  4 15:12 memory_monitor_summary.json
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc   1598969 Jun  4 15:12 agis_ddmendpoints.agis.ALL.json
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc    396801 Jun  4 15:12 log.45006595._043794.job.log.tgz.1
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc        95 Jun  4 15:14 pilot_heartbeat.json
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc      7696 Jun  4 15:14 heartbeat.json
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc      4539 Jun  4 15:14 pilotlog.txt
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc   1206080 Jun  4 15:14 log.45006595._043794.job.log.1
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc       357 Jun  4 15:14 output.list
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc       620 Jun  4 15:14 runtime_log
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc   1617920 Jun  4 15:14 result.tar.gz
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc      8659 Jun  4 15:14 runtime_log.err
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc       657 Jun  4 15:14 ooTKDmuMmg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIlZKDmutSOzn.diag
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc      8192 Jun  4 15:26 boinc_mmap_file
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc        28 Jun  4 15:26 wrapper_checkpoint.txt
[2025-06-04 15:26:13] -rw-r--r--. 1 boinc boinc     20509 Jun  4 15:26 stderr.txt
[2025-06-04 15:26:13] HITS file was successfully produced:
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc 177987787 Jun  4 15:11 shared/HITS.pool.root.1
[2025-06-04 15:26:13]  *** Contents of shared directory: ***
[2025-06-04 15:26:13] total 386096
[2025-06-04 15:26:13] -rw-r--r--. 2 boinc boinc 215222826 Jun  4 11:14 ATLAS.root_0
[2025-06-04 15:26:13] -rw-r--r--. 2 boinc boinc     15093 Jun  4 11:14 start_atlas.sh
[2025-06-04 15:26:13] -rw-r--r--. 2 boinc boinc    508881 Jun  4 11:14 input.tar.gz
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc 177987787 Jun  4 15:11 HITS.pool.root.1
[2025-06-04 15:26:13] -rw-------. 1 boinc boinc   1617920 Jun  4 15:14 result.tar.gz
15:26:15 (14970): run_atlas exited; CPU time 48919.901733
15:26:15 (14970): called boinc_finish(0)

</stderr_txt>
]]>

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