Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:19:58 (3598362): wrapper (7.7.26015): starting
11:19:58 (3598362): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 11:19:58] Arguments: --nthreads 4
[2025-06-05 11:19:58] Threads: 4
[2025-06-05 11:19:58] Checking for CVMFS
[2025-06-05 11:19:58] No cvmfs_config command found, will try listing directly
[2025-06-05 11:19:58] CVMFS is ok
[2025-06-05 11:19:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 11:19:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 11:19:58] Further information can be found at the LHC@home message board.
[2025-06-05 11:19:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 11:19:58] Checking for apptainer binary...
[2025-06-05 11:19:58] which: no apptainer in ((null))
[2025-06-05 11:19:58] apptainer is not installed, using version from CVMFS
[2025-06-05 11:19:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 11:19:58] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-06-05 11:19:58] apptainer works
[2025-06-05 11:19:58] Set ATHENA_PROC_NUMBER=4
[2025-06-05 11:19:58] Set ATHENA_CORE_NUMBER=4
[2025-06-05 11:19:58] Starting ATLAS job with PandaID=6677785922
[2025-06-05 11:19:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 13:37:35]  *** The last 200 lines of the pilot log: ***
[2025-06-05 13:37:35] 2025-06-05 11:29:57,822 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:37:35] 2025-06-05 11:30:00,325 | INFO     | monitor loop #541: job 0:6677785922 is in state 'finished'
[2025-06-05 13:37:35] 2025-06-05 11:30:00,325 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 13:37:35] 2025-06-05 11:30:01,679 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 13:37:35] 2025-06-05 11:30:01,680 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6677785922/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 13:37:35] 2025-06-05 11:30:01,680 | INFO     | extracted standard info from prmon json
[2025-06-05 13:37:35] 2025-06-05 11:30:01,680 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 13:37:35] 2025-06-05 11:30:01,681 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 13:37:35] 2025-06-05 11:30:01,681 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 13:37:35] 2025-06-05 11:30:01,681 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 13:37:35] 2025-06-05 11:30:01,684 | INFO     | fitting pss+swap vs Time
[2025-06-05 13:37:35] 2025-06-05 11:30:01,684 | INFO     | sum of square deviations: 635130048.0
[2025-06-05 13:37:35] 2025-06-05 11:30:01,685 | INFO     | sum of deviations: 11085055054.000004
[2025-06-05 13:37:35] 2025-06-05 11:30:01,685 | INFO     | mean x: 1749119089.0
[2025-06-05 13:37:35] 2025-06-05 11:30:01,685 | INFO     | mean y: 2302965.57480315
[2025-06-05 13:37:35] 2025-06-05 11:30:01,685 | INFO     | -- intersect: -30525431407.28758
[2025-06-05 13:37:35] 2025-06-05 11:30:01,685 | INFO     | intersect: -30525431407.28758
[2025-06-05 13:37:35] 2025-06-05 11:30:01,685 | INFO     | chi2: 1.533024247191859
[2025-06-05 13:37:35] 2025-06-05 11:30:01,686 | INFO     | sum of square deviations: 563026370.5
[2025-06-05 13:37:35] 2025-06-05 11:30:01,686 | INFO     | sum of deviations: 10752491837.999998
[2025-06-05 13:37:35] 2025-06-05 11:30:01,686 | INFO     | mean x: 1749118936.5
[2025-06-05 13:37:35] 2025-06-05 11:30:01,686 | INFO     | mean y: 2302261.7868852457
[2025-06-05 13:37:35] 2025-06-05 11:30:01,686 | INFO     | -- intersect: -33401794018.295765
[2025-06-05 13:37:35] 2025-06-05 11:30:01,687 | INFO     | intersect: -33401794018.295765
[2025-06-05 13:37:35] 2025-06-05 11:30:01,687 | INFO     | chi2: 1.53552118107875
[2025-06-05 13:37:35] 2025-06-05 11:30:01,687 | INFO     | current chi2=1.53552118107875 (change=-0.16287634663735956 %)
[2025-06-05 13:37:35] 2025-06-05 11:30:01,687 | INFO     | right removable region: 121
[2025-06-05 13:37:35] 2025-06-05 11:30:01,687 | INFO     | sum of square deviations: 563026370.5
[2025-06-05 13:37:35] 2025-06-05 11:30:01,688 | INFO     | sum of deviations: -7051282220.499993
[2025-06-05 13:37:35] 2025-06-05 11:30:01,688 | INFO     | mean x: 1749119241.5
[2025-06-05 13:37:35] 2025-06-05 11:30:01,688 | INFO     | mean y: 2340623.155737705
[2025-06-05 13:37:35] 2025-06-05 11:30:01,688 | INFO     | -- intersect: 21908123469.82861
[2025-06-05 13:37:35] 2025-06-05 11:30:01,688 | INFO     | intersect: 21908123469.82861
[2025-06-05 13:37:35] 2025-06-05 11:30:01,689 | INFO     | chi2: 0.010228080835587626
[2025-06-05 13:37:35] 2025-06-05 11:30:01,689 | INFO     | current chi2=0.010228080835587626 (change=99.33281676044439 %)
[2025-06-05 13:37:35] 2025-06-05 11:30:01,689 | INFO     | sum of square deviations: 496597218.0
[2025-06-05 13:37:35] 2025-06-05 11:30:01,689 | INFO     | sum of deviations: -6152157562.000001
[2025-06-05 13:37:35] 2025-06-05 11:30:01,690 | INFO     | mean x: 1749119394.0
[2025-06-05 13:37:35] 2025-06-05 11:30:01,690 | INFO     | mean y: 2338560.846153846
[2025-06-05 13:37:35] 2025-06-05 11:30:01,690 | INFO     | -- intersect: 21671525814.80689
[2025-06-05 13:37:35] 2025-06-05 11:30:01,690 | INFO     | intersect: 21671525814.80689
[2025-06-05 13:37:35] 2025-06-05 11:30:01,690 | INFO     | chi2: 0.010167802889443755
[2025-06-05 13:37:35] 2025-06-05 11:30:01,690 | INFO     | current chi2=0.010167802889443755 (change=0.5893377957489293 %)
[2025-06-05 13:37:35] 2025-06-05 11:30:01,690 | INFO     | left removable region: 20
[2025-06-05 13:37:35] 2025-06-05 11:30:01,691 | INFO     | sum of square deviations: 319447850.0
[2025-06-05 13:37:35] 2025-06-05 11:30:01,691 | INFO     | sum of deviations: -3932176754.000001
[2025-06-05 13:37:35] 2025-06-05 11:30:01,691 | INFO     | mean x: 1749119516.0
[2025-06-05 13:37:35] 2025-06-05 11:30:01,691 | INFO     | mean y: 2334185.9504950494
[2025-06-05 13:37:35] 2025-06-05 11:30:01,691 | INFO     | -- intersect: 21532756446.682358
[2025-06-05 13:37:35] 2025-06-05 11:30:01,691 | INFO     | intersect: 21532756446.682358
[2025-06-05 13:37:35] 2025-06-05 11:30:01,692 | INFO     | chi2: 0.008925745512595949
[2025-06-05 13:37:35] 2025-06-05 11:30:01,692 | INFO     | -- intersect: 21532756446.682358
[2025-06-05 13:37:35] 2025-06-05 11:30:01,692 | INFO     | current memory leak: -12.31 B/s (using 101 data points, chi2=0.01)
[2025-06-05 13:37:35] 2025-06-05 11:30:01,692 | INFO     | ..............................
[2025-06-05 13:37:35] 2025-06-05 11:30:01,692 | INFO     | . Timing measurements:
[2025-06-05 13:37:35] 2025-06-05 11:30:01,693 | INFO     | . get job = 0 s
[2025-06-05 13:37:35] 2025-06-05 11:30:01,693 | INFO     | . initial setup = 1 s
[2025-06-05 13:37:35] 2025-06-05 11:30:01,693 | INFO     | . payload setup = 10 s
[2025-06-05 13:37:35] 2025-06-05 11:30:01,693 | INFO     | . stage-in = 0 s
[2025-06-05 13:37:35] 2025-06-05 11:30:01,693 | INFO     | . payload execution = 7748 s
[2025-06-05 13:37:35] 2025-06-05 11:30:01,693 | INFO     | . stage-out = 0 s
[2025-06-05 13:37:35] 2025-06-05 11:30:01,693 | INFO     | . log creation = 0 s
[2025-06-05 13:37:35] 2025-06-05 11:30:01,693 | INFO     | ..............................
[2025-06-05 13:37:35] 2025-06-05 11:30:02,196 | INFO     | 
[2025-06-05 13:37:35] 2025-06-05 11:30:02,197 | INFO     | job summary report
[2025-06-05 13:37:35] 2025-06-05 11:30:02,197 | INFO     | --------------------------------------------------
[2025-06-05 13:37:35] 2025-06-05 11:30:02,197 | INFO     | PanDA job id: 6677785922
[2025-06-05 13:37:35] 2025-06-05 11:30:02,197 | INFO     | task id: 45006595
[2025-06-05 13:37:35] 2025-06-05 11:30:02,198 | INFO     | errors: (none)
[2025-06-05 13:37:35] 2025-06-05 11:30:02,198 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 13:37:35] 2025-06-05 11:30:02,198 | INFO     | pilot state: finished 
[2025-06-05 13:37:35] 2025-06-05 11:30:02,198 | INFO     | transexitcode: 0
[2025-06-05 13:37:35] 2025-06-05 11:30:02,198 | INFO     | exeerrorcode: 0
[2025-06-05 13:37:35] 2025-06-05 11:30:02,198 | INFO     | exeerrordiag: 
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | exitcode: 0
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | exitmsg: OK
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | cpuconsumptiontime: 29418 s
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | nevents: 400
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | neventsw: 0
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | pid: 3625337
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | pgrp: 3625337
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | corecount: 4
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | event service: False
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | sizes: {0: 2397352, 7: 2397558, 11: 2397586, 7762: 2425328, 7764: 2434293, 7765: 2434349, 7773: 2434647}
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | --------------------------------------------------
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | 
[2025-06-05 13:37:35] 2025-06-05 11:30:02,199 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-06-05 13:37:35] 2025-06-05 11:30:02,230 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,230 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,230 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,231 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,231 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,231 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,231 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,231 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,231 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,231 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,231 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,231 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,231 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,231 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,232 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,232 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,232 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,232 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 13:37:35] 2025-06-05 11:30:02,232 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,232 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 13:37:35] 2025-06-05 11:30:02,232 | INFO     | job 6677785922 has completed (purged errors)
[2025-06-05 13:37:35] 2025-06-05 11:30:02,232 | INFO     | overall cleanup function is called
[2025-06-05 13:37:35] 2025-06-05 11:30:03,241 | INFO     | --- collectZombieJob: --- 10, [3625337]
[2025-06-05 13:37:35] 2025-06-05 11:30:03,242 | INFO     | zombie collector waiting for pid 3625337
[2025-06-05 13:37:35] 2025-06-05 11:30:03,242 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 13:37:35] 2025-06-05 11:30:03,242 | INFO     | collected zombie processes
[2025-06-05 13:37:35] 2025-06-05 11:30:03,242 | INFO     | will attempt to kill all subprocesses of pid=3625337
[2025-06-05 13:37:35] 2025-06-05 11:30:03,466 | INFO     | PID=3605761 has CPU usage=16.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-05 13:37:35] 2025-06-05 11:30:03,466 | INFO     | .. there are 12 such processes running
[2025-06-05 13:37:35] 2025-06-05 11:30:04,132 | INFO     | process IDs to be killed: [3625337] (in reverse order)
[2025-06-05 13:37:35] 2025-06-05 11:30:04,376 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 13:37:35] 2025-06-05 11:30:04,377 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 13:37:35] 2025-06-05 11:30:04,404 | INFO     | did not find any defunct processes belonging to 3625337
[2025-06-05 13:37:35] 2025-06-05 11:30:04,428 | INFO     | did not find any defunct processes belonging to 3625337
[2025-06-05 13:37:35] 2025-06-05 11:30:04,429 | INFO     | ready for new job
[2025-06-05 13:37:35] 2025-06-05 11:30:04,429 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 13:37:35] 2025-06-05 11:30:04,431 | INFO     | **************************************
[2025-06-05 13:37:35] 2025-06-05 11:30:04,431 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 13:37:35] 2025-06-05 11:30:04,431 | INFO     | **************************************
[2025-06-05 13:37:35] 2025-06-05 11:30:04,431 | INFO     | 
[2025-06-05 13:37:35] 2025-06-05 11:30:04,439 | INFO     | architecture information:
[2025-06-05 13:37:35] 2025-06-05 11:30:04,440 | INFO     | executing command: cat /etc/os-release
[2025-06-05 13:37:35] 2025-06-05 11:30:04,465 | INFO     | cat /etc/os-release:
[2025-06-05 13:37:35] NAME="CentOS Linux"
[2025-06-05 13:37:35] VERSION="7 (Core)"
[2025-06-05 13:37:35] ID="centos"
[2025-06-05 13:37:35] ID_LIKE="rhel fedora"
[2025-06-05 13:37:35] VERSION_ID="7"
[2025-06-05 13:37:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 13:37:35] ANSI_COLOR="0;31"
[2025-06-05 13:37:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 13:37:35] HOME_URL="https://www.centos.org/"
[2025-06-05 13:37:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 13:37:35] 
[2025-06-05 13:37:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 13:37:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 13:37:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 13:37:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 13:37:35] 
[2025-06-05 13:37:35] 2025-06-05 11:30:04,465 | INFO     | **************************************
[2025-06-05 13:37:35] 2025-06-05 11:30:04,968 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-06-05 13:37:35] 2025-06-05 11:30:04,997 | INFO     | sufficient remaining disk space (3280908320768 B)
[2025-06-05 13:37:35] 2025-06-05 11:30:04,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 13:37:35] 2025-06-05 11:30:04,997 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 13:37:35] 2025-06-05 11:30:04,997 | INFO     | update_server=False
[2025-06-05 13:37:35] 2025-06-05 11:30:04,998 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 13:37:35] 2025-06-05 11:30:04,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 13:37:35] 2025-06-05 11:30:05,336 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 13:37:35] 2025-06-05 11:30:05,339 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 13:37:35] 2025-06-05 11:30:05,339 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:37:35] 2025-06-05 11:30:05,339 | INFO     | will abort loop
[2025-06-05 13:37:35] 2025-06-05 11:30:05,384 | INFO     | all payload control threads have been joined
[2025-06-05 13:37:35] 2025-06-05 11:30:05,392 | INFO     | all data control threads have been joined
[2025-06-05 13:37:35] 2025-06-05 11:30:05,472 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 13:37:35] 2025-06-05 11:30:05,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 13:37:35] 2025-06-05 11:30:05,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 13:37:35] 2025-06-05 11:30:05,793 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 13:37:35] 2025-06-05 11:30:06,003 | INFO     | [job] retrieve thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:06,345 | INFO     | [job] job monitor thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:06,363 | INFO     | [payload] validate_post thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:06,390 | INFO     | [payload] control thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:06,397 | INFO     | [data] control thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:06,545 | INFO     | all job control threads have been joined
[2025-06-05 13:37:35] 2025-06-05 11:30:06,658 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:06,751 | INFO     | [job] validate thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:06,803 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 13:37:35] 2025-06-05 11:30:06,957 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:07,057 | INFO     | [payload] failed_post thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:07,216 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:07,274 | INFO     | [data] copytool_in thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:07,550 | INFO     | [job] control thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:07,799 | INFO     | [data] copytool_out thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:07,808 | INFO     | [job] queue monitor thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:09,004 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:15,606 | INFO     | job.realtimelogging is not enabled
[2025-06-05 13:37:35] 2025-06-05 11:30:16,608 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 13:37:35] 2025-06-05 11:30:17,727 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23004575131456)>', '<ExcThread(monitor, started 23004337637120)>']
[2025-06-05 13:37:35] 2025-06-05 11:30:18,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 13:37:35] 2025-06-05 11:30:18,535 | INFO     | [monitor] control thread has ended
[2025-06-05 13:37:35] 2025-06-05 11:30:22,753 | INFO     | all workflow threads have been joined
[2025-06-05 13:37:35] 2025-06-05 11:30:22,753 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 13:37:35] 2025-06-05 11:30:22,753 | INFO     | traces error code: 0
[2025-06-05 13:37:35] 2025-06-05 11:30:22,753 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 13:37:35] 2025-06-05 11:30:22,869 [wrapper] ==== pilot stdout END ====
[2025-06-05 13:37:35] 2025-06-05 11:30:22,873 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 13:37:35] 2025-06-05 11:30:22,877 [wrapper] pilotpid: 3605761
[2025-06-05 13:37:35] 2025-06-05 11:30:22,881 [wrapper] Pilot exit status: 0
[2025-06-05 13:37:35] 2025-06-05 11:30:22,896 [wrapper] pandaids: 6677785922
[2025-06-05 13:37:35] 2025-06-05 11:30:23,047 [wrapper] cleanup supervisor_pilot 4013440 3605762
[2025-06-05 13:37:35] 2025-06-05 11:30:23,051 [wrapper] Test setup, not cleaning
[2025-06-05 13:37:35] 2025-06-05 11:30:23,055 [wrapper] apfmon messages muted
[2025-06-05 13:37:35] 2025-06-05 11:30:23,058 [wrapper] ==== wrapper stdout END ====
[2025-06-05 13:37:35] 2025-06-05 11:30:23,062 [wrapper] ==== wrapper stderr END ====
[2025-06-05 13:37:35]  *** Error codes and diagnostics ***
[2025-06-05 13:37:35]     "exeErrorCode": 0,
[2025-06-05 13:37:35]     "exeErrorDiag": "",
[2025-06-05 13:37:35]     "pilotErrorCode": 0,
[2025-06-05 13:37:35]     "pilotErrorDiag": "",
[2025-06-05 13:37:35]  *** Listing of results directory ***
[2025-06-05 13:37:35] total 387888
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc      5111 Jun  3 18:58 queuedata.json
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc    495897 Jun  3 18:58 pilot3.tar.gz
[2025-06-05 13:37:35] -rwx------ 1 boinc boinc     37140 Jun  3 19:00 runpilot2-wrapper.sh
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc       100 Jun  5 11:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 13:37:35] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 11:19 run_atlas
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc       105 Jun  5 11:19 job.xml
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc      6687 Jun  5 11:19 init_data.xml
[2025-06-05 13:37:35] -rw-r--r-- 2 boinc boinc 218185072 Jun  5 11:19 EVNT.45006593._001595.pool.root.1
[2025-06-05 13:37:35] -rw-r--r-- 2 boinc boinc     15093 Jun  5 11:19 start_atlas.sh
[2025-06-05 13:37:35] drwxrwx--x 2 boinc boinc      4096 Jun  5 11:19 shared
[2025-06-05 13:37:35] -rw-r--r-- 2 boinc boinc    508887 Jun  5 11:19 input.tar.gz
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc         0 Jun  5 11:19 boinc_lockfile
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc      2524 Jun  5 11:19 pandaJob.out
[2025-06-05 13:37:35] -rw------- 1 boinc boinc    983289 Jun  5 11:20 agis_schedconf.cvmfs.json
[2025-06-05 13:37:35] -rw------- 1 boinc boinc   1598969 Jun  5 11:20 agis_ddmendpoints.agis.ALL.json
[2025-06-05 13:37:35] drwx------ 4 boinc boinc      4096 Jun  5 11:20 pilot3
[2025-06-05 13:37:35] -rw------- 1 boinc boinc 173171423 Jun  5 13:29 HITS.45006595._039762.pool.root.1
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc       528 Jun  5 13:29 boinc_task_state.xml
[2025-06-05 13:37:35] -rw------- 1 boinc boinc      1028 Jun  5 13:29 memory_monitor_summary.json
[2025-06-05 13:37:35] -rw------- 1 boinc boinc        95 Jun  5 13:29 pilot_heartbeat.json
[2025-06-05 13:37:35] -rw------- 1 boinc boinc    263089 Jun  5 13:29 log.45006595._039762.job.log.tgz.1
[2025-06-05 13:37:35] -rw------- 1 boinc boinc      7699 Jun  5 13:30 heartbeat.json
[2025-06-05 13:37:35] -rw------- 1 boinc boinc      4623 Jun  5 13:30 pilotlog.txt
[2025-06-05 13:37:35] -rw------- 1 boinc boinc    739116 Jun  5 13:30 log.45006595._039762.job.log.1
[2025-06-05 13:37:35] -rw------- 1 boinc boinc       357 Jun  5 13:30 output.list
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc       620 Jun  5 13:30 runtime_log
[2025-06-05 13:37:35] -rw------- 1 boinc boinc   1024000 Jun  5 13:30 result.tar.gz
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc      9040 Jun  5 13:30 runtime_log.err
[2025-06-05 13:37:35] -rw------- 1 boinc boinc       662 Jun  5 13:30 982NDmCBkg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmINZKDm7B3XNn.diag
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc        26 Jun  5 13:37 wrapper_checkpoint.txt
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc      8192 Jun  5 13:37 boinc_mmap_file
[2025-06-05 13:37:35] -rw-r--r-- 1 boinc boinc     20904 Jun  5 13:37 stderr.txt
[2025-06-05 13:37:35] HITS file was successfully produced:
[2025-06-05 13:37:35] -rw------- 1 boinc boinc 173171423 Jun  5 13:29 shared/HITS.pool.root.1
[2025-06-05 13:37:35]  *** Contents of shared directory: ***
[2025-06-05 13:37:35] total 383712
[2025-06-05 13:37:35] -rw-r--r-- 2 boinc boinc 218185072 Jun  5 11:19 ATLAS.root_0
[2025-06-05 13:37:35] -rw-r--r-- 2 boinc boinc     15093 Jun  5 11:19 start_atlas.sh
[2025-06-05 13:37:35] -rw-r--r-- 2 boinc boinc    508887 Jun  5 11:19 input.tar.gz
[2025-06-05 13:37:35] -rw------- 1 boinc boinc 173171423 Jun  5 13:29 HITS.pool.root.1
[2025-06-05 13:37:35] -rw------- 1 boinc boinc   1024000 Jun  5 13:30 result.tar.gz
13:37:36 (3598362): run_atlas exited; CPU time 29891.568709
13:37:36 (3598362): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN