Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:57:51 (2541574): wrapper (7.7.26015): starting
15:57:51 (2541574): wrapper: running run_atlas (--nthreads 12)
[2025-06-03 15:57:51] Arguments: --nthreads 12
[2025-06-03 15:57:51] Threads: 12
[2025-06-03 15:57:51] Checking for CVMFS
[2025-06-03 15:57:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 15:57:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 15:57:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 15:57:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 15:57:51] 2.11.5.0 626789 22844 248936 146760 2 838 29681207 45568000 15011 130560 0 199950510 99.805 124123705 29696 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-06-03 15:57:51] CVMFS is ok
[2025-06-03 15:57:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 15:57:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 15:57:51] Further information can be found at the LHC@home message board.
[2025-06-03 15:57:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 15:57:51] Checking for apptainer binary...
[2025-06-03 15:57:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 15:57:51] Running /usr/bin/apptainer --version
[2025-06-03 15:57:51] apptainer version 1.4.0-1.el9
[2025-06-03 15:57:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 15:57:51] wns0137.triumf.lcg
[2025-06-03 15:57:51] apptainer works
[2025-06-03 15:57:51] Set ATHENA_PROC_NUMBER=12
[2025-06-03 15:57:51] Set ATHENA_CORE_NUMBER=12
[2025-06-03 15:57:51] Starting ATLAS job with PandaID=6678074300
[2025-06-03 15:57:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 16:00:57]  *** The last 200 lines of the pilot log: ***
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 16:00:57] 2025-06-03 23:00:42,666 | WARNING  | found no stored workdir sizes
[2025-06-03 16:00:57] 2025-06-03 23:00:42,666 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 16:00:57] 2025-06-03 23:00:42,666 | WARNING  | wrong length of table data, x=[1748991504.0], y=[782.0] (must be same and length>=4)
[2025-06-03 16:00:57] 2025-06-03 23:00:42,666 | INFO     | ..............................
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . Timing measurements:
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . get job = 0 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . initial setup = 2 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . payload setup = 4 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . stage-in = 0 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . payload execution = 16 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . stage-out = 0 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . log creation = 0 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | ..............................
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6678074300/pilotlog.txt
[2025-06-03 16:00:57] 2025-06-03 23:00:42,678 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-06-03 16:00:57] - Log from pilotlog.txt -
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | INFO     | extracted standard info from prmon json
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 16:00:57] 2025-06-03 23:00:42,666 | WARNING  | found no stored workdir sizes
[2025-06-03 16:00:57] 2025-06-03 23:00:42,666 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 16:00:57] 2025-06-03 23:00:42,666 | WARNING  | wrong length of table data, x=[1748991504.0], y=[782.0] (must be same and length>=4)
[2025-06-03 16:00:57] 2025-06-03 23:00:42,666 | INFO     | ..............................
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . Timing measurements:
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . get job = 0 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . initial setup = 2 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . payload setup = 4 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . stage-in = 0 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . payload execution = 16 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . stage-out = 0 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . log creation = 0 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | ..............................
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6678074300/pilotlog.txt
[2025-06-03 16:00:57] 2025-06-03 23:00:42,678 | WARNING  | 
[2025-06-03 16:00:57] [begin log extracts]
[2025-06-03 16:00:57] - Log from pilotlog.txt -
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | INFO     | extracted standard info from prmon json
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 16:00:57] 2025-06-03 23:00:42,665 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 16:00:57] 2025-06-03 23:00:42,666 | WARNING  | found no stored workdir sizes
[2025-06-03 16:00:57] 2025-06-03 23:00:42,666 | INFO     | will not add max space = 0 B to job metrics
[2025-06-03 16:00:57] 2025-06-03 23:00:42,666 | WARNING  | wrong length of table data, x=[1748991504.0], y=[782.0] (must be same and length>=4)
[2025-06-03 16:00:57] 2025-06-03 23:00:42,666 | INFO     | ..............................
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . Timing measurements:
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . get job = 0 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . initial setup = 2 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . payload setup = 4 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . stage-in = 0 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . payload execution = 16 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . stage-out = 0 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | . log creation = 0 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | ..............................
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-06-03 16:00:57] 2025-06-03 23:00:42,667 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6678074300/pilotlog.txt
[2025-06-03 16:00:57] [end log extracts]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,678 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-06-03 16:00:57] 2025-06-03 23:00:42,679 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-06-03 16:00:57] 2025-06-03 23:00:42,749 | INFO     | 
[2025-06-03 16:00:57] 2025-06-03 23:00:42,749 | INFO     | job summary report
[2025-06-03 16:00:57] 2025-06-03 23:00:42,749 | INFO     | --------------------------------------------------
[2025-06-03 16:00:57] 2025-06-03 23:00:42,749 | INFO     | PanDA job id: 6678074300
[2025-06-03 16:00:57] 2025-06-03 23:00:42,749 | INFO     | task id: 45006595
[2025-06-03 16:00:57] 2025-06-03 23:00:42,749 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-06-03 15:58:32,470 CRITICAL Transform executor raised TransformValidationExceptio
[2025-06-03 16:00:57] 2025-06-03 23:00:42,749 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 16:00:57] 2025-06-03 23:00:42,749 | INFO     | pilot state: failed 
[2025-06-03 16:00:57] 2025-06-03 23:00:42,749 | INFO     | transexitcode: 65
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | exeerrorcode: 65
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | exitcode: 65
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | cpuconsumptiontime: 18 s
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | nevents: 0
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | neventsw: 0
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | pid: 2551444
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | pgrp: 2551444
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | corecount: 12
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | event service: False
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | sizes: {0: 2405178, 4: 2405384, 11: 2405412, 25: 2432795, 28: 2432795, 148: 2432937}
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | --------------------------------------------------
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | 
[2025-06-03 16:00:57] 2025-06-03 23:00:42,750 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-06-03 16:00:57] 2025-06-03 23:00:42,764 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,764 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,765 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 16:00:57] 2025-06-03 23:00:42,766 | INFO     | job 6678074300 has completed (purged errors)
[2025-06-03 16:00:57] 2025-06-03 23:00:42,766 | INFO     | overall cleanup function is called
[2025-06-03 16:00:57] 2025-06-03 23:00:43,772 | INFO     | --- collectZombieJob: --- 10, [2551444]
[2025-06-03 16:00:57] 2025-06-03 23:00:43,772 | INFO     | zombie collector waiting for pid 2551444
[2025-06-03 16:00:57] 2025-06-03 23:00:43,772 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 16:00:57] 2025-06-03 23:00:43,772 | INFO     | collected zombie processes
[2025-06-03 16:00:57] 2025-06-03 23:00:43,772 | INFO     | will attempt to kill all subprocesses of pid=2551444
[2025-06-03 16:00:57] 2025-06-03 23:00:43,954 | INFO     | process IDs to be killed: [2551444] (in reverse order)
[2025-06-03 16:00:57] 2025-06-03 23:00:44,022 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 16:00:57] 2025-06-03 23:00:44,022 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 16:00:57] 2025-06-03 23:00:44,030 | INFO     | did not find any defunct processes belonging to 2551444
[2025-06-03 16:00:57] 2025-06-03 23:00:44,037 | INFO     | did not find any defunct processes belonging to 2551444
[2025-06-03 16:00:57] 2025-06-03 23:00:44,037 | INFO     | ready for new job
[2025-06-03 16:00:57] 2025-06-03 23:00:44,037 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 16:00:57] 2025-06-03 23:00:44,038 | INFO     | **************************************
[2025-06-03 16:00:57] 2025-06-03 23:00:44,038 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 16:00:57] 2025-06-03 23:00:44,038 | INFO     | **************************************
[2025-06-03 16:00:57] 2025-06-03 23:00:44,038 | INFO     | 
[2025-06-03 16:00:57] 2025-06-03 23:00:44,041 | INFO     | architecture information:
[2025-06-03 16:00:57] 2025-06-03 23:00:44,041 | INFO     | executing command: cat /etc/os-release
[2025-06-03 16:00:57] 2025-06-03 23:00:44,053 | INFO     | cat /etc/os-release:
[2025-06-03 16:00:57] NAME="CentOS Linux"
[2025-06-03 16:00:57] VERSION="7 (Core)"
[2025-06-03 16:00:57] ID="centos"
[2025-06-03 16:00:57] ID_LIKE="rhel fedora"
[2025-06-03 16:00:57] VERSION_ID="7"
[2025-06-03 16:00:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 16:00:57] ANSI_COLOR="0;31"
[2025-06-03 16:00:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 16:00:57] HOME_URL="https://www.centos.org/"
[2025-06-03 16:00:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 16:00:57] 
[2025-06-03 16:00:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 16:00:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 16:00:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 16:00:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 16:00:57] 
[2025-06-03 16:00:57] 2025-06-03 23:00:44,053 | INFO     | **************************************
[2025-06-03 16:00:57] 2025-06-03 23:00:44,556 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-06-03 16:00:57] 2025-06-03 23:00:44,570 | INFO     | sufficient remaining disk space (1976033083392 B)
[2025-06-03 16:00:57] 2025-06-03 23:00:44,571 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 16:00:57] 2025-06-03 23:00:44,571 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 16:00:57] 2025-06-03 23:00:44,571 | INFO     | update_server=False
[2025-06-03 16:00:57] 2025-06-03 23:00:44,571 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 16:00:57] 2025-06-03 23:00:44,571 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 16:00:57] 2025-06-03 23:00:44,572 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:00:57] 2025-06-03 23:00:44,572 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 16:00:57] 2025-06-03 23:00:44,572 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 16:00:57] 2025-06-03 23:00:44,572 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 16:00:57] 2025-06-03 23:00:44,573 | INFO     | aborting loop
[2025-06-03 16:00:57] 2025-06-03 23:00:44,573 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 16:00:57] 2025-06-03 23:00:44,573 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 16:00:57] 2025-06-03 23:00:44,683 | INFO     | all payload control threads have been joined
[2025-06-03 16:00:57] 2025-06-03 23:00:45,113 | INFO     | all data control threads have been joined
[2025-06-03 16:00:57] 2025-06-03 23:00:45,575 | INFO     | [job] retrieve thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:45,576 | INFO     | [job] queue monitor thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:45,578 | INFO     | [job] job monitor thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:45,688 | INFO     | [payload] control thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:45,898 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:45,932 | INFO     | [job] validate thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:46,106 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:46,119 | INFO     | [data] control thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:46,188 | INFO     | all job control threads have been joined
[2025-06-03 16:00:57] 2025-06-03 23:00:46,244 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:46,276 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:46,319 | INFO     | [payload] failed_post thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:46,536 | INFO     | [payload] validate_post thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:46,578 | INFO     | [data] copytool_out thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:46,600 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 16:00:57] 2025-06-03 23:00:46,745 | INFO     | [data] copytool_in thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:47,193 | INFO     | [job] control thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:50,606 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 16:00:57] 2025-06-03 23:00:52,263 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139780399855424)>', '<ExcThread(monitor, started 139779626751744)>']
[2025-06-03 16:00:57] 2025-06-03 23:00:52,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 16:00:57] 2025-06-03 23:00:52,613 | INFO     | [monitor] control thread has ended
[2025-06-03 16:00:57] 2025-06-03 23:00:57,288 | INFO     | all workflow threads have been joined
[2025-06-03 16:00:57] 2025-06-03 23:00:57,288 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 16:00:57] 2025-06-03 23:00:57,288 | INFO     | traces error code: 0
[2025-06-03 16:00:57] 2025-06-03 23:00:57,288 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 16:00:57] 2025-06-03 23:00:57,416 [wrapper] ==== pilot stdout END ====
[2025-06-03 16:00:57] 2025-06-03 23:00:57,418 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 16:00:57] 2025-06-03 23:00:57,421 [wrapper] pilotpid: 2545133
[2025-06-03 16:00:57] 2025-06-03 23:00:57,423 [wrapper] Pilot exit status: 0
[2025-06-03 16:00:57] 2025-06-03 23:00:57,434 [wrapper] pandaids: 6678074300
[2025-06-03 16:00:57] 2025-06-03 23:00:57,480 [wrapper] cleanup supervisor_pilot 2545139 2545134
[2025-06-03 16:00:57] 2025-06-03 23:00:57,482 [wrapper] Test setup, not cleaning
[2025-06-03 16:00:57] 2025-06-03 23:00:57,485 [wrapper] apfmon messages muted
[2025-06-03 16:00:57] 2025-06-03 23:00:57,487 [wrapper] ==== wrapper stdout END ====
[2025-06-03 16:00:57] 2025-06-03 23:00:57,490 [wrapper] ==== wrapper stderr END ====
[2025-06-03 16:00:57]  *** Error codes and diagnostics ***
[2025-06-03 16:00:57]     "exeErrorCode": 65,
[2025-06-03 16:00:57]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 16:00:57]     "pilotErrorCode": 1305,
[2025-06-03 16:00:57]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-06-03 16:00:57]  *** Listing of results directory ***
[2025-06-03 16:00:57] total 215228
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc    495897 Jun  3 13:49 pilot3.tar.gz
[2025-06-03 16:00:57] -rwx------. 1 boinc boinc     37140 Jun  3 14:07 runpilot2-wrapper.sh
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc      5111 Jun  3 14:07 queuedata.json
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc       100 Jun  3 15:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 16:00:57] -rwxr-xr-x. 1 boinc boinc      7986 Jun  3 15:57 run_atlas
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc       105 Jun  3 15:57 job.xml
[2025-06-03 16:00:57] -rw-r--r--. 2 boinc boinc 216372102 Jun  3 15:57 EVNT.45006593._001838.pool.root.1
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc      6601 Jun  3 15:57 init_data.xml
[2025-06-03 16:00:57] -rw-r--r--. 2 boinc boinc     15093 Jun  3 15:57 start_atlas.sh
[2025-06-03 16:00:57] drwxrwx--x. 2 boinc boinc      4096 Jun  3 15:57 shared
[2025-06-03 16:00:57] -rw-r--r--. 2 boinc boinc    508876 Jun  3 15:57 input.tar.gz
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc         0 Jun  3 15:57 boinc_lockfile
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc      2523 Jun  3 15:57 pandaJob.out
[2025-06-03 16:00:57] -rw-------. 1 boinc boinc    986861 Jun  3 15:57 agis_schedconf.cvmfs.json
[2025-06-03 16:00:57] -rw-------. 1 boinc boinc   1603667 Jun  3 15:57 agis_ddmendpoints.agis.ALL.json
[2025-06-03 16:00:57] drwx------. 4 boinc boinc      4096 Jun  3 15:58 pilot3
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc       523 Jun  3 15:58 boinc_task_state.xml
[2025-06-03 16:00:57] -rw-------. 1 boinc boinc       963 Jun  3 15:58 memory_monitor_summary.json
[2025-06-03 16:00:57] -rw-------. 1 boinc boinc     20355 Jun  3 15:58 log.45006595._045813.job.log.tgz.1
[2025-06-03 16:00:57] -rw-------. 1 boinc boinc        95 Jun  3 15:59 pilot_heartbeat.json
[2025-06-03 16:00:57] -rw-------. 1 boinc boinc      8313 Jun  3 16:00 heartbeat.json
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc      8192 Jun  3 16:00 boinc_mmap_file
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc        22 Jun  3 16:00 wrapper_checkpoint.txt
[2025-06-03 16:00:57] -rw-------. 1 boinc boinc      4475 Jun  3 16:00 pilotlog.txt
[2025-06-03 16:00:57] -rw-------. 1 boinc boinc     72820 Jun  3 16:00 log.45006595._045813.job.log.1
[2025-06-03 16:00:57] -rw-------. 1 boinc boinc       188 Jun  3 16:00 output.list
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc       620 Jun  3 16:00 runtime_log
[2025-06-03 16:00:57] -rw-------. 1 boinc boinc    112640 Jun  3 16:00 result.tar.gz
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc      8484 Jun  3 16:00 runtime_log.err
[2025-06-03 16:00:57] -rw-------. 1 boinc boinc       643 Jun  3 16:00 DurKDmy1ng7n9Rq4apOajLDm4fhM0noT9bVof3QYDmGyZKDmrD84Dn.diag
[2025-06-03 16:00:57] -rw-r--r--. 1 boinc boinc     21468 Jun  3 16:00 stderr.txt
[2025-06-03 16:00:57] No HITS result produced
[2025-06-03 16:00:57]  *** Contents of shared directory: ***
[2025-06-03 16:00:57] total 211936
[2025-06-03 16:00:57] -rw-r--r--. 2 boinc boinc 216372102 Jun  3 15:57 ATLAS.root_0
[2025-06-03 16:00:57] -rw-r--r--. 2 boinc boinc     15093 Jun  3 15:57 start_atlas.sh
[2025-06-03 16:00:57] -rw-r--r--. 2 boinc boinc    508876 Jun  3 15:57 input.tar.gz
[2025-06-03 16:00:57] -rw-------. 1 boinc boinc    112640 Jun  3 16:00 result.tar.gz
16:00:58 (2541574): run_atlas exited; CPU time 21.242795
16:00:58 (2541574): called boinc_finish(0)

</stderr_txt>
]]>

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