Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:53:08 (27348): wrapper (7.7.26015): starting
09:53:08 (27348): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:53:08] Arguments: --nthreads 8
[2025-06-04 09:53:08] Threads: 8
[2025-06-04 09:53:08] Checking for CVMFS
[2025-06-04 09:53:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:53:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:53:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:53:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:53:13] 2.11.2.0 702 33114 84676 146772 1 69 18935285 25165824 3906 130560 0 18590035 99.800 19722723 2300 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 09:53:13] CVMFS is ok
[2025-06-04 09:53:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:53:13] Checking for apptainer binary...
[2025-06-04 09:53:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:53:13] Running /usr/bin/apptainer --version
[2025-06-04 09:53:13] apptainer version 1.3.2-1.el7
[2025-06-04 09:53:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:04:28] cg-vwn487.simple-grid.lan
[2025-06-04 10:04:28] apptainer works
[2025-06-04 10:04:28] Set ATHENA_PROC_NUMBER=8
[2025-06-04 10:04:28] Set ATHENA_CORE_NUMBER=8
[2025-06-04 10:04:28] Starting ATLAS job with PandaID=6677976674
[2025-06-04 10:04:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 15:34:56]  *** The last 200 lines of the pilot log: ***
[2025-06-04 15:34:56] 2025-06-04 11:43:49,354 | INFO     | extracted standard info from prmon json
[2025-06-04 15:34:56] 2025-06-04 11:43:49,354 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 15:34:56] 2025-06-04 11:43:49,354 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 15:34:56] 2025-06-04 11:43:49,355 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 15:34:56] 2025-06-04 11:43:49,355 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 15:34:56] 2025-06-04 11:43:49,359 | INFO     | fitting pss+swap vs Time
[2025-06-04 15:34:56] 2025-06-04 11:43:49,360 | INFO     | sum of square deviations: 2632440055.0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,361 | INFO     | sum of deviations: 60894005240.999985
[2025-06-04 15:34:56] 2025-06-04 11:43:49,361 | INFO     | mean x: 1749031126.5
[2025-06-04 15:34:56] 2025-06-04 11:43:49,361 | INFO     | mean y: 2426261.6764705884
[2025-06-04 15:34:56] 2025-06-04 11:43:49,361 | INFO     | -- intersect: -40456428777.194725
[2025-06-04 15:34:56] 2025-06-04 11:43:49,361 | INFO     | intersect: -40456428777.194725
[2025-06-04 15:34:56] 2025-06-04 11:43:49,362 | INFO     | chi2: 5.541737784058455
[2025-06-04 15:34:56] 2025-06-04 11:43:49,362 | INFO     | sum of square deviations: 2443580700.0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,364 | INFO     | sum of deviations: 72633422606.00002
[2025-06-04 15:34:56] 2025-06-04 11:43:49,364 | INFO     | mean x: 1749030974.0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,364 | INFO     | mean y: 2435525.422110553
[2025-06-04 15:34:56] 2025-06-04 11:43:49,364 | INFO     | -- intersect: -51986068838.491806
[2025-06-04 15:34:56] 2025-06-04 11:43:49,364 | INFO     | intersect: -51986068838.491806
[2025-06-04 15:34:56] 2025-06-04 11:43:49,364 | INFO     | chi2: 4.8176446912457
[2025-06-04 15:34:56] 2025-06-04 11:43:49,364 | INFO     | current chi2=4.8176446912457 (change=13.066173843441398 %)
[2025-06-04 15:34:56] 2025-06-04 11:43:49,365 | INFO     | right removable region: 198
[2025-06-04 15:34:56] 2025-06-04 11:43:49,365 | INFO     | sum of square deviations: 2443580700.0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,373 | INFO     | sum of deviations: -5134243241.999996
[2025-06-04 15:34:56] 2025-06-04 11:43:49,374 | INFO     | mean x: 1749031279.0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,374 | INFO     | mean y: 2479482.462311558
[2025-06-04 15:34:56] 2025-06-04 11:43:49,374 | INFO     | -- intersect: 3677394750.9665847
[2025-06-04 15:34:56] 2025-06-04 11:43:49,374 | INFO     | intersect: 3677394750.9665847
[2025-06-04 15:34:56] 2025-06-04 11:43:49,374 | INFO     | chi2: 1.3113919282049906
[2025-06-04 15:34:56] 2025-06-04 11:43:49,375 | INFO     | current chi2=1.3113919282049906 (change=76.33608843822628 %)
[2025-06-04 15:34:56] 2025-06-04 11:43:49,375 | INFO     | sum of square deviations: 2263977332.5
[2025-06-04 15:34:56] 2025-06-04 11:43:49,376 | INFO     | sum of deviations: -24435316377.0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,376 | INFO     | mean x: 1749031431.5
[2025-06-04 15:34:56] 2025-06-04 11:43:49,376 | INFO     | mean y: 2495733.9484536084
[2025-06-04 15:34:56] 2025-06-04 11:43:49,377 | INFO     | -- intersect: 18879953457.796803
[2025-06-04 15:34:56] 2025-06-04 11:43:49,377 | INFO     | intersect: 18879953457.796803
[2025-06-04 15:34:56] 2025-06-04 11:43:49,377 | INFO     | chi2: 0.807983010352493
[2025-06-04 15:34:56] 2025-06-04 11:43:49,377 | INFO     | current chi2=0.807983010352493 (change=38.387373524675766 %)
[2025-06-04 15:34:56] 2025-06-04 11:43:49,377 | INFO     | sum of square deviations: 2093397390.0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,379 | INFO     | sum of deviations: -24149495997.0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,379 | INFO     | mean x: 1749031584.0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,379 | INFO     | mean y: 2495471.9417989417
[2025-06-04 15:34:56] 2025-06-04 11:43:49,379 | INFO     | -- intersect: 20179377051.23648
[2025-06-04 15:34:56] 2025-06-04 11:43:49,379 | INFO     | intersect: 20179377051.23648
[2025-06-04 15:34:56] 2025-06-04 11:43:49,379 | INFO     | chi2: 0.8072136867880231
[2025-06-04 15:34:56] 2025-06-04 11:43:49,380 | INFO     | current chi2=0.8072136867880231 (change=0.09521531450695682 %)
[2025-06-04 15:34:56] 2025-06-04 11:43:49,380 | INFO     | left removable region: 30
[2025-06-04 15:34:56] 2025-06-04 11:43:49,380 | INFO     | sum of square deviations: 1470248962.0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,381 | INFO     | sum of deviations: -7647852338.5
[2025-06-04 15:34:56] 2025-06-04 11:43:49,381 | INFO     | mean x: 1749031858.5
[2025-06-04 15:34:56] 2025-06-04 11:43:49,381 | INFO     | mean y: 2503586.720238095
[2025-06-04 15:34:56] 2025-06-04 11:43:49,381 | INFO     | -- intersect: 9100511975.003138
[2025-06-04 15:34:56] 2025-06-04 11:43:49,381 | INFO     | intersect: 9100511975.003138
[2025-06-04 15:34:56] 2025-06-04 11:43:49,382 | INFO     | chi2: 0.015231791289534698
[2025-06-04 15:34:56] 2025-06-04 11:43:49,382 | INFO     | -- intersect: 9100511975.003138
[2025-06-04 15:34:56] 2025-06-04 11:43:49,382 | INFO     | current memory leak: -5.20 B/s (using 168 data points, chi2=0.02)
[2025-06-04 15:34:56] 2025-06-04 11:43:49,383 | INFO     | ..............................
[2025-06-04 15:34:56] 2025-06-04 11:43:49,383 | INFO     | . Timing measurements:
[2025-06-04 15:34:56] 2025-06-04 11:43:49,383 | INFO     | . get job = 0 s
[2025-06-04 15:34:56] 2025-06-04 11:43:49,383 | INFO     | . initial setup = 4 s
[2025-06-04 15:34:56] 2025-06-04 11:43:49,383 | INFO     | . payload setup = 166 s
[2025-06-04 15:34:56] 2025-06-04 11:43:49,383 | INFO     | . stage-in = 0 s
[2025-06-04 15:34:56] 2025-06-04 11:43:49,383 | INFO     | . payload execution = 12556 s
[2025-06-04 15:34:56] 2025-06-04 11:43:49,384 | INFO     | . stage-out = 4 s
[2025-06-04 15:34:56] 2025-06-04 11:43:49,384 | INFO     | . log creation = 1 s
[2025-06-04 15:34:56] 2025-06-04 11:43:49,384 | INFO     | ..............................
[2025-06-04 15:34:56] 2025-06-04 11:43:49,599 | INFO     | 
[2025-06-04 15:34:56] 2025-06-04 11:43:49,600 | INFO     | job summary report
[2025-06-04 15:34:56] 2025-06-04 11:43:49,600 | INFO     | --------------------------------------------------
[2025-06-04 15:34:56] 2025-06-04 11:43:49,600 | INFO     | PanDA job id: 6677976674
[2025-06-04 15:34:56] 2025-06-04 11:43:49,600 | INFO     | task id: 45006595
[2025-06-04 15:34:56] 2025-06-04 11:43:49,600 | INFO     | errors: (none)
[2025-06-04 15:34:56] 2025-06-04 11:43:49,600 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 15:34:56] 2025-06-04 11:43:49,600 | INFO     | pilot state: finished 
[2025-06-04 15:34:56] 2025-06-04 11:43:49,600 | INFO     | transexitcode: 0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,600 | INFO     | exeerrorcode: 0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,601 | INFO     | exeerrordiag: 
[2025-06-04 15:34:56] 2025-06-04 11:43:49,601 | INFO     | exitcode: 0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,601 | INFO     | exitmsg: OK
[2025-06-04 15:34:56] 2025-06-04 11:43:49,601 | INFO     | cpuconsumptiontime: 45381 s
[2025-06-04 15:34:56] 2025-06-04 11:43:49,601 | INFO     | nevents: 400
[2025-06-04 15:34:56] 2025-06-04 11:43:49,601 | INFO     | neventsw: 0
[2025-06-04 15:34:56] 2025-06-04 11:43:49,601 | INFO     | pid: 18034
[2025-06-04 15:34:56] 2025-06-04 11:43:49,601 | INFO     | pgrp: 18034
[2025-06-04 15:34:56] 2025-06-04 11:43:49,601 | INFO     | corecount: 8
[2025-06-04 15:34:56] 2025-06-04 11:43:49,601 | INFO     | event service: False
[2025-06-04 15:34:56] 2025-06-04 11:43:49,601 | INFO     | sizes: {0: 2404356, 1: 2405212, 2: 2405240, 12: 2405240, 23: 2405268, 34: 2405296, 45: 2405452, 55: 2405480, 66: 2405508, 77: 2405536, 82: 2405798, 87: 2406134, 12
[2025-06-04 15:34:56] 2025-06-04 11:43:49,602 | INFO     | --------------------------------------------------
[2025-06-04 15:34:56] 2025-06-04 11:43:49,602 | INFO     | 
[2025-06-04 15:34:56] 2025-06-04 11:43:49,602 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-04 15:34:56] 2025-06-04 11:43:50,105 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,105 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,105 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,105 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,106 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,106 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,106 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,106 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,106 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,106 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,106 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,106 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,106 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,106 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,107 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,107 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 15:34:56] 2025-06-04 11:43:50,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,107 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 15:34:56] 2025-06-04 11:43:50,107 | INFO     | job 6677976674 has completed (purged errors)
[2025-06-04 15:34:56] 2025-06-04 11:43:50,107 | INFO     | overall cleanup function is called
[2025-06-04 15:34:56] 2025-06-04 11:43:51,116 | INFO     | --- collectZombieJob: --- 10, [18034]
[2025-06-04 15:34:56] 2025-06-04 11:43:51,117 | INFO     | zombie collector waiting for pid 18034
[2025-06-04 15:34:56] 2025-06-04 11:43:51,117 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 15:34:56] 2025-06-04 11:43:51,117 | INFO     | collected zombie processes
[2025-06-04 15:34:56] 2025-06-04 11:43:51,117 | INFO     | will attempt to kill all subprocesses of pid=18034
[2025-06-04 15:34:56] 2025-06-04 11:43:51,230 | INFO     | process IDs to be killed: [18034] (in reverse order)
[2025-06-04 15:34:56] 2025-06-04 11:43:51,296 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 15:34:56] 2025-06-04 11:43:51,296 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 15:34:56] 2025-06-04 11:43:51,299 | INFO     | did not find any defunct processes belonging to 18034
[2025-06-04 15:34:56] 2025-06-04 11:43:51,303 | INFO     | did not find any defunct processes belonging to 18034
[2025-06-04 15:34:56] 2025-06-04 11:43:51,303 | INFO     | ready for new job
[2025-06-04 15:34:56] 2025-06-04 11:43:51,303 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 15:34:56] 2025-06-04 11:43:51,305 | INFO     | **************************************
[2025-06-04 15:34:56] 2025-06-04 11:43:51,305 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 15:34:56] 2025-06-04 11:43:51,305 | INFO     | **************************************
[2025-06-04 15:34:56] 2025-06-04 11:43:51,305 | INFO     | 
[2025-06-04 15:34:56] 2025-06-04 11:43:51,306 | INFO     | pilot is running in a VM
[2025-06-04 15:34:56] 2025-06-04 11:43:51,306 | INFO     | architecture information:
[2025-06-04 15:34:56] 2025-06-04 11:43:51,306 | INFO     | executing command: cat /etc/os-release
[2025-06-04 15:34:56] 2025-06-04 11:43:51,381 | INFO     | cat /etc/os-release:
[2025-06-04 15:34:56] NAME="CentOS Linux"
[2025-06-04 15:34:56] VERSION="7 (Core)"
[2025-06-04 15:34:56] ID="centos"
[2025-06-04 15:34:56] ID_LIKE="rhel fedora"
[2025-06-04 15:34:56] VERSION_ID="7"
[2025-06-04 15:34:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 15:34:56] ANSI_COLOR="0;31"
[2025-06-04 15:34:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 15:34:56] HOME_URL="https://www.centos.org/"
[2025-06-04 15:34:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 15:34:56] 
[2025-06-04 15:34:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 15:34:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 15:34:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 15:34:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 15:34:56] 
[2025-06-04 15:34:56] 2025-06-04 11:43:51,382 | INFO     | **************************************
[2025-06-04 15:34:56] 2025-06-04 11:43:51,885 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-04 15:34:56] 2025-06-04 11:43:52,009 | INFO     | sufficient remaining disk space (496669556736 B)
[2025-06-04 15:34:56] 2025-06-04 11:43:52,010 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 15:34:56] 2025-06-04 11:43:52,010 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 15:34:56] 2025-06-04 11:43:52,010 | INFO     | update_server=False
[2025-06-04 15:34:56] 2025-06-04 11:43:52,010 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 15:34:56] 2025-06-04 11:43:52,012 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 15:34:56] 2025-06-04 11:43:52,013 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 15:34:56] 2025-06-04 11:43:52,013 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 15:34:56] 2025-06-04 11:43:52,013 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 15:34:56] 2025-06-04 11:43:52,196 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 15:34:56] 2025-06-04 11:43:52,450 | INFO     | all data control threads have been joined
[2025-06-04 15:34:56] 2025-06-04 11:43:52,484 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:34:56] 2025-06-04 11:43:52,485 | INFO     | aborting loop
[2025-06-04 15:34:56] 2025-06-04 11:43:52,742 | INFO     | all job control threads have been joined
[2025-06-04 15:34:56] 2025-06-04 11:43:52,805 | INFO     | all payload control threads have been joined
[2025-06-04 15:34:56] 2025-06-04 11:43:53,017 | INFO     | [job] retrieve thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:53,077 | INFO     | [data] copytool_in thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:53,116 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:53,324 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:53,457 | INFO     | [data] control thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:53,491 | INFO     | [job] job monitor thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:53,751 | INFO     | [job] control thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:53,812 | INFO     | [payload] control thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:54,058 | INFO     | [payload] failed_post thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:54,203 | INFO     | [data] copytool_out thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:54,332 | INFO     | [job] validate thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:54,347 | INFO     | [payload] validate_post thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:54,484 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:54,508 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:54,557 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:34:56] 2025-06-04 11:43:54,695 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 15:34:56] 2025-06-04 11:43:55,563 | INFO     | [job] queue monitor thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:58,704 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 15:34:56] 2025-06-04 11:43:58,902 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140487488042816)>', '<ExcThread(monitor, started 140486828353280)>']
[2025-06-04 15:34:56] 2025-06-04 11:43:59,053 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 15:34:56] 2025-06-04 11:43:59,054 | INFO     | [monitor] control thread has ended
[2025-06-04 15:34:56] 2025-06-04 11:44:03,926 | INFO     | all workflow threads have been joined
[2025-06-04 15:34:56] 2025-06-04 11:44:03,927 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 15:34:56] 2025-06-04 11:44:03,927 | INFO     | traces error code: 0
[2025-06-04 15:34:56] 2025-06-04 11:44:03,927 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 15:34:56] 2025-06-04 11:44:04,319 [wrapper] ==== pilot stdout END ====
[2025-06-04 15:34:56] 2025-06-04 11:44:04,378 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 15:34:56] 2025-06-04 11:44:04,434 [wrapper] pilotpid: 5387
[2025-06-04 15:34:56] 2025-06-04 11:44:04,441 [wrapper] Pilot exit status: 0
[2025-06-04 15:34:56] 2025-06-04 11:44:04,516 [wrapper] pandaids: 6677976674
[2025-06-04 15:34:56] 2025-06-04 11:44:04,940 [wrapper] cleanup supervisor_pilot 18478 5388
[2025-06-04 15:34:56] 2025-06-04 11:44:05,039 [wrapper] Test setup, not cleaning
[2025-06-04 15:34:56] 2025-06-04 11:44:05,127 [wrapper] apfmon messages muted
[2025-06-04 15:34:56] 2025-06-04 11:44:05,205 [wrapper] ==== wrapper stdout END ====
[2025-06-04 15:34:56] 2025-06-04 11:44:05,298 [wrapper] ==== wrapper stderr END ====
[2025-06-04 15:34:56]  *** Error codes and diagnostics ***
[2025-06-04 15:34:56]     "exeErrorCode": 0,
[2025-06-04 15:34:56]     "exeErrorDiag": "",
[2025-06-04 15:34:56]     "pilotErrorCode": 0,
[2025-06-04 15:34:56]     "pilotErrorDiag": "",
[2025-06-04 15:34:56]  *** Listing of results directory ***
[2025-06-04 15:34:56] total 389808
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc    495897 Jun  3 20:57 pilot3.tar.gz
[2025-06-04 15:34:56] -rwx------. 1 boinc boinc     37140 Jun  3 21:10 runpilot2-wrapper.sh
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc      5111 Jun  3 21:10 queuedata.json
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc       100 Jun  4 09:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 15:34:56] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 09:53 run_atlas
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc       105 Jun  4 09:53 job.xml
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc      6391 Jun  4 09:53 init_data.xml
[2025-06-04 15:34:56] -rw-r--r--. 2 boinc boinc 214334940 Jun  4 09:53 EVNT.45006593._001740.pool.root.1
[2025-06-04 15:34:56] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:53 start_atlas.sh
[2025-06-04 15:34:56] drwxrwx--x. 2 boinc boinc        68 Jun  4 09:53 shared
[2025-06-04 15:34:56] -rw-r--r--. 2 boinc boinc    508879 Jun  4 09:53 input.tar.gz
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc         0 Jun  4 09:53 boinc_lockfile
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc      2525 Jun  4 10:04 pandaJob.out
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc    986745 Jun  4 10:07 agis_schedconf.cvmfs.json
[2025-06-04 15:34:56] drwx------. 4 boinc boinc      4096 Jun  4 10:07 pilot3
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc 178060044 Jun  4 13:41 HITS.45006595._043400.pool.root.1
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc       531 Jun  4 13:41 boinc_task_state.xml
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc      1016 Jun  4 13:42 memory_monitor_summary.json
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc   1598969 Jun  4 13:42 agis_ddmendpoints.agis.ALL.json
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc    363715 Jun  4 13:42 log.45006595._043400.job.log.tgz.1
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc        95 Jun  4 13:43 pilot_heartbeat.json
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc      7695 Jun  4 13:43 heartbeat.json
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc      4539 Jun  4 13:44 pilotlog.txt
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc   1115646 Jun  4 13:44 log.45006595._043400.job.log.1
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc       357 Jun  4 13:44 output.list
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc       620 Jun  4 13:44 runtime_log
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc   1495040 Jun  4 13:44 result.tar.gz
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc      8659 Jun  4 13:44 runtime_log.err
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc       657 Jun  4 13:44 bEpKDmSDmg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmohZKDmf5k5Pn.diag
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc      8192 Jun  4 15:34 boinc_mmap_file
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc        28 Jun  4 15:34 wrapper_checkpoint.txt
[2025-06-04 15:34:56] -rw-r--r--. 1 boinc boinc     20503 Jun  4 15:34 stderr.txt
[2025-06-04 15:34:56] HITS file was successfully produced:
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc 178060044 Jun  4 13:41 shared/HITS.pool.root.1
[2025-06-04 15:34:56]  *** Contents of shared directory: ***
[2025-06-04 15:34:56] total 385176
[2025-06-04 15:34:56] -rw-r--r--. 2 boinc boinc 214334940 Jun  4 09:53 ATLAS.root_0
[2025-06-04 15:34:56] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:53 start_atlas.sh
[2025-06-04 15:34:56] -rw-r--r--. 2 boinc boinc    508879 Jun  4 09:53 input.tar.gz
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc 178060044 Jun  4 13:41 HITS.pool.root.1
[2025-06-04 15:34:56] -rw-------. 1 boinc boinc   1495040 Jun  4 13:44 result.tar.gz
15:34:58 (27348): run_atlas exited; CPU time 45546.667838
15:34:58 (27348): called boinc_finish(0)

</stderr_txt>
]]>

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