Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 08:56:22 (3536): Detected: vboxwrapper 26206
2025-06-04 08:56:22 (3536): Detected: BOINC client v8.0.4
2025-06-04 08:56:22 (3536): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-06-04 08:56:23 (3536): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 08:56:23 (3536): Create VM. (boinc_4d6ea9347758191e, slot#35)
2025-06-04 08:56:24 (3536): Setting Memory Size for VM. (4800MB)
2025-06-04 08:56:24 (3536): Setting CPU Count for VM. (8)
2025-06-04 08:56:24 (3536): Setting Chipset Options for VM.
2025-06-04 08:56:24 (3536): Setting Graphics Controller Options for VM.
2025-06-04 08:56:25 (3536): Setting Boot Options for VM.
2025-06-04 08:56:25 (3536): Setting Network Configuration for NAT.
2025-06-04 08:56:25 (3536): Enabling VM Network Access.
2025-06-04 08:56:25 (3536): Disabling USB Support for VM.
2025-06-04 08:56:26 (3536): Disabling COM Port Support for VM.
2025-06-04 08:56:26 (3536): Disabling LPT Port Support for VM.
2025-06-04 08:56:26 (3536): Disabling Audio Support for VM.
2025-06-04 08:56:26 (3536): Disabling Clipboard Support for VM.
2025-06-04 08:56:27 (3536): Disabling Drag and Drop Support for VM.
2025-06-04 08:56:27 (3536): Adding storage controller(s) to VM.
2025-06-04 08:56:27 (3536): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 08:56:28 (3536): Adding VirtualBox Guest Additions to VM.
2025-06-04 08:56:28 (3536): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 08:56:28 (3536): forwarding host port 54620 to guest port 80
2025-06-04 08:56:29 (3536): Enabling remote desktop for VM.
2025-06-04 08:56:29 (3536): Required extension pack not installed, remote desktop not enabled.
2025-06-04 08:56:29 (3536): Enabling shared directory for VM.
2025-06-04 08:56:29 (3536): Starting VM using VBoxManage interface. (boinc_4d6ea9347758191e, slot#35)
2025-06-04 08:56:36 (3536): Successfully started VM. (PID = '13828')
2025-06-04 08:56:36 (3536): Reporting VM Process ID to BOINC.
2025-06-04 08:56:36 (3536): Guest Log: BIOS: VirtualBox 7.0.20
2025-06-04 08:56:36 (3536): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 08:56:36 (3536): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 08:56:36 (3536): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 08:56:36 (3536): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 08:56:36 (3536): Detected: Web Application Enabled (http://localhost:54620)
2025-06-04 08:56:36 (3536): Preference change detected
2025-06-04 08:56:36 (3536): Setting CPU throttle for VM. (100%)
2025-06-04 08:56:36 (3536): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 08:56:38 (3536): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 08:56:38 (3536): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 08:56:41 (3536): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 08:56:41 (3536): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 08:56:41 (3536): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 08:56:48 (3536): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 08:56:48 (3536): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 08:56:55 (3536): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 08:56:55 (3536): Guest Log: 00:00:00.000211 main     Log opened 2025-06-04T08:56:53.319955000Z
2025-06-04 08:56:55 (3536): Guest Log: 00:00:00.000345 main     OS Product: Linux
2025-06-04 08:56:55 (3536): Guest Log: 00:00:00.000384 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 08:56:55 (3536): Guest Log: 00:00:00.000415 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 08:56:55 (3536): Guest Log: 00:00:00.000448 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 08:56:55 (3536): Guest Log: 00:00:00.000449 main     Process ID: 1368
2025-06-04 08:56:55 (3536): Guest Log: 00:00:00.000449 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 08:56:55 (3536): Guest Log: 00:00:00.001397 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 08:56:55 (3536): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 08:56:55 (3536): Guest Log: [INFO] Mounting shared directory
2025-06-04 08:56:55 (3536): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 08:56:59 (3536): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 08:56:59 (3536): Guest Log: [INFO] Detected branch: prod
2025-06-04 08:56:59 (3536): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 08:56:59 (3536): Guest Log: Copying input files
2025-06-04 08:57:00 (3536): Guest Log: Copied input files into RunAtlas.
2025-06-04 08:57:01 (3536): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 08:57:01 (3536): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 08:57:01 (3536): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 08:57:01 (3536): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 08:57:05 (3536): Guest Log: 00:00:10.015589 timesync vgsvcTimeSyncWorker: Radical guest time change: -35 988 314 341 000ns (GuestNow=1 748 991 425 008 469 000 ns GuestLast=1 749 027 413 322 810 000 ns fSetTimeLastLoop=true )
2025-06-04 08:57:10 (3536): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 08:57:11 (3536): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 08:57:11 (3536): Guest Log: 2.6.3.0 1644 0 32032 146760 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 08:57:12 (3536): Guest Log: copied the webapp to /var/www
2025-06-04 08:57:12 (3536): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-04 08:57:12 (3536): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-04 08:57:12 (3536): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 08:57:12 (3536): Guest Log:  *** Starting ATLAS job. (PandaID=6677976259 taskID=45006595) ***
2025-06-04 09:23:29 (3536): Preference change detected
2025-06-04 09:23:29 (3536): Setting CPU throttle for VM. (100%)
2025-06-04 09:23:29 (3536): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 09:58:15 (3536): Preference change detected
2025-06-04 09:58:15 (3536): Setting CPU throttle for VM. (100%)
2025-06-04 09:58:15 (3536): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 10:05:21 (3536): Preference change detected
2025-06-04 10:05:21 (3536): Setting CPU throttle for VM. (100%)
2025-06-04 10:05:22 (3536): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 10:07:13 (3536): Preference change detected
2025-06-04 10:07:13 (3536): Setting CPU throttle for VM. (100%)
2025-06-04 10:07:13 (3536): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 10:31:23 (3536): Preference change detected
2025-06-04 10:31:23 (3536): Setting CPU throttle for VM. (100%)
2025-06-04 10:31:23 (3536): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 10:36:39 (3536): Preference change detected
2025-06-04 10:36:39 (3536): Setting CPU throttle for VM. (100%)
2025-06-04 10:36:39 (3536): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 10:36:44 (3536): Status Report: Elapsed Time: '6000.000000'
2025-06-04 10:36:44 (3536): Status Report: CPU Time: '42219.500000'
2025-06-04 11:00:18 (3536): Preference change detected
2025-06-04 11:00:18 (3536): Setting CPU throttle for VM. (100%)
2025-06-04 11:00:18 (3536): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 11:01:36 (3536): Guest Log:  *** Job finished ***
2025-06-04 11:01:36 (3536): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:27,732 | INFO     | [payload] validate_post thread has finished
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:28,474 | INFO     | [data] copytool_out thread has finished
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:30,535 | INFO     | [data] queue_monitor thread has finished
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:31,852 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139686776137536)>', '<ExcThread(monitor, started 139685724665600)>']
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:32,313 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:32,313 | INFO     | [monitor] control thread has ended
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:36,865 | INFO     | all workflow threads have been joined
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:36,866 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:36,866 | INFO     | traces error code: 0
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:36,866 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:36,998 [wrapper] ==== pilot stdout END ====
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:37,006 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:37,012 [wrapper] pilotpid: 6004
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:37,019 [wrapper] Pilot exit status: 0
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:37,096 [wrapper] pandaids: 6677976259
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:37,139 [wrapper] cleanup supervisor_pilot  3752 6005
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:37,149 [wrapper] Test setup, not cleaning
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:37,156 [wrapper] apfmon messages muted
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:37,163 [wrapper] ==== wrapper stdout END ====
2025-06-04 11:01:36 (3536): Guest Log: 2025-06-04 01:01:37,169 [wrapper] ==== wrapper stderr END ====
2025-06-04 11:01:36 (3536): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 11:01:36 (3536): Guest Log:     "exeErrorCode": 0,
2025-06-04 11:01:36 (3536): Guest Log:     "exeErrorDiag": "",
2025-06-04 11:01:36 (3536): Guest Log:     "pilotErrorCode": 0,
2025-06-04 11:01:36 (3536): Guest Log:     "pilotErrorDiag": "",
2025-06-04 11:01:36 (3536): Guest Log:  *** Listing of results directory ***
2025-06-04 11:01:36 (3536): Guest Log: total 185332
2025-06-04 11:01:36 (3536): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  3 18:57 pilot3.tar.gz
2025-06-04 11:01:36 (3536): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  3 19:07 queuedata.json
2025-06-04 11:01:36 (3536): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  3 19:08 runpilot2-wrapper.sh
2025-06-04 11:01:36 (3536): Guest Log: -rwxr-xr-x. 1 atlas atlas      9334 Jun  3 22:57 init_data.xml
2025-06-04 11:01:36 (3536): Guest Log: -rwxr-xr-x. 1 atlas atlas    508880 Jun  3 22:57 input.tar.gz
2025-06-04 11:01:36 (3536): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  3 22:57 start_atlas.sh
2025-06-04 11:01:36 (3536): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  3 22:57 EVNT.45006593._001733.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 11:01:36 (3536): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  3 22:57 pandaJob.out
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas    986861 Jun  3 22:58 agis_schedconf.cvmfs.json
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  3 22:58 agis_ddmendpoints.agis.ALL.json
2025-06-04 11:01:36 (3536): Guest Log: drwx------. 4 atlas atlas      4096 Jun  3 22:58 pilot3
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas 184111887 Jun  4 01:00 HITS.45006595._043234.pool.root.1
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 01:00 pilot_heartbeat.json
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas      1032 Jun  4 01:01 memory_monitor_summary.json
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas    322231 Jun  4 01:01 log.45006595._043234.job.log.tgz.1
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas      7726 Jun  4 01:01 heartbeat.json
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  4 01:01 pilotlog.txt
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas    626209 Jun  4 01:01 log.45006595._043234.job.log.1
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 01:01 output.list
2025-06-04 11:01:36 (3536): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 01:01 runtime_log
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas    972800 Jun  4 01:01 result.tar.gz
2025-06-04 11:01:36 (3536): Guest Log: -rw-r--r--. 1 atlas atlas      8577 Jun  4 01:01 runtime_log.err
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas       648 Jun  4 01:01 r7MKDmqAmg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIrlKDmDyJ9Bn.diag
2025-06-04 11:01:36 (3536): Guest Log: Looking for outputfile HITS.45006595._043234.pool.root.1
2025-06-04 11:01:36 (3536): Guest Log: HITS file was successfully produced
2025-06-04 11:01:36 (3536): Guest Log: -rw-------. 1 atlas atlas 184111887 Jun  4 01:00 /home/atlas/RunAtlas/HITS.45006595._043234.pool.root.1
2025-06-04 11:01:37 (3536): Guest Log: Successfully finished the ATLAS job!
2025-06-04 11:01:37 (3536): Guest Log: Copying the results back to the shared directory!
2025-06-04 11:01:37 (3536): Guest Log:  *** Contents of shared directory: ***
2025-06-04 11:01:37 (3536): Guest Log: total 394100
2025-06-04 11:01:37 (3536): Guest Log: -rwxrwxrwx. 1 root root 217925907 Jun  3 22:56 ATLAS.root_0
2025-06-04 11:01:37 (3536): Guest Log: -rwxrwxrwx. 1 root root 184111887 Jun  4 01:01 HITS.pool.root.1
2025-06-04 11:01:37 (3536): Guest Log: -rwxrwxrwx. 1 root root      9334 Jun  3 22:56 init_data.xml
2025-06-04 11:01:37 (3536): Guest Log: -rwxrwxrwx. 1 root root    508880 Jun  3 22:55 input.tar.gz
2025-06-04 11:01:37 (3536): Guest Log: -rwxrwxrwx. 1 root root    972800 Jun  4 01:01 result.tar.gz
2025-06-04 11:01:37 (3536): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  3 22:55 start_atlas.sh
2025-06-04 11:01:37 (3536): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 11:01:37 (3536): VM Completion File Detected.
2025-06-04 11:01:37 (3536): Powering off VM.
2025-06-04 11:01:38 (3536): Successfully stopped VM.
2025-06-04 11:01:38 (3536): Deregistering VM. (boinc_4d6ea9347758191e, slot#35)
2025-06-04 11:01:38 (3536): Removing network bandwidth throttle group from VM.
2025-06-04 11:01:38 (3536): Removing VM from VirtualBox.
11:01:43 (3536): called boinc_finish(0)

</stderr_txt>
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