Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:39:54 (1973087): wrapper (7.7.26015): starting
18:39:54 (1973087): wrapper: running run_atlas (--nthreads 10)
[2025-06-03 18:39:54] Arguments: --nthreads 10
[2025-06-03 18:39:54] Threads: 10
[2025-06-03 18:39:54] Checking for CVMFS
[2025-06-03 18:39:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-03 18:39:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-03 18:39:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-03 18:39:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-03 18:39:55] 2.12.6.0 3466542 93932 313224 146760 3 148 23270106 32935936 17073 130560 2 356979271 99.615 371685960 25596 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-03 18:39:55] CVMFS is ok
[2025-06-03 18:39:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 18:39:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 18:39:55] Further information can be found at the LHC@home message board.
[2025-06-03 18:39:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 18:39:55] Checking for apptainer binary...
[2025-06-03 18:39:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-03 18:39:55] Running /usr/bin/apptainer --version
[2025-06-03 18:39:55] apptainer version 1.4.1-1.el9
[2025-06-03 18:39:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 18:39:55] c-4-11.aglt2.org
[2025-06-03 18:39:55] apptainer works
[2025-06-03 18:39:55] Set ATHENA_PROC_NUMBER=10
[2025-06-03 18:39:55] Set ATHENA_CORE_NUMBER=10
[2025-06-03 18:39:55] Starting ATLAS job with PandaID=6677976099
[2025-06-03 18:39:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 21:04:45]  *** The last 200 lines of the pilot log: ***
[2025-06-03 21:04:45] 2025-06-04 01:04:32,022 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6677976099/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 21:04:45] 2025-06-04 01:04:32,023 | INFO     | extracted standard info from prmon json
[2025-06-03 21:04:45] 2025-06-04 01:04:32,023 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 21:04:45] 2025-06-04 01:04:32,023 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 21:04:45] 2025-06-04 01:04:32,024 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 21:04:45] 2025-06-04 01:04:32,024 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 21:04:45] 2025-06-04 01:04:32,027 | INFO     | fitting pss+swap vs Time
[2025-06-03 21:04:45] 2025-06-04 01:04:32,028 | INFO     | sum of square deviations: 887864564.9577459
[2025-06-03 21:04:45] 2025-06-04 01:04:32,029 | INFO     | sum of deviations: 11314261031.549309
[2025-06-03 21:04:45] 2025-06-04 01:04:32,029 | INFO     | mean x: 1748994738.633803
[2025-06-03 21:04:45] 2025-06-04 01:04:32,029 | INFO     | mean y: 2230894.76056338
[2025-06-03 21:04:45] 2025-06-04 01:04:32,029 | INFO     | -- intersect: -22285608711.329536
[2025-06-03 21:04:45] 2025-06-04 01:04:32,029 | INFO     | intersect: -22285608711.329536
[2025-06-03 21:04:45] 2025-06-04 01:04:32,029 | INFO     | chi2: 4.154293251542214
[2025-06-03 21:04:45] 2025-06-04 01:04:32,030 | INFO     | sum of square deviations: 797347732.3649652
[2025-06-03 21:04:45] 2025-06-04 01:04:32,031 | INFO     | sum of deviations: 18576227786.043816
[2025-06-03 21:04:45] 2025-06-04 01:04:32,031 | INFO     | mean x: 1748994586.1386862
[2025-06-03 21:04:45] 2025-06-04 01:04:32,031 | INFO     | mean y: 2242740.576642336
[2025-06-03 21:04:45] 2025-06-04 01:04:32,031 | INFO     | -- intersect: -40745000287.63622
[2025-06-03 21:04:45] 2025-06-04 01:04:32,031 | INFO     | intersect: -40745000287.63622
[2025-06-03 21:04:45] 2025-06-04 01:04:32,031 | INFO     | chi2: 3.520402344542764
[2025-06-03 21:04:45] 2025-06-04 01:04:32,031 | INFO     | current chi2=3.520402344542764 (change=15.25869428606486 %)
[2025-06-03 21:04:45] 2025-06-04 01:04:32,032 | INFO     | right removable region: 136
[2025-06-03 21:04:45] 2025-06-04 01:04:32,032 | INFO     | sum of square deviations: 797336142.3649652
[2025-06-03 21:04:45] 2025-06-04 01:04:32,033 | INFO     | sum of deviations: -17562896805.49635
[2025-06-03 21:04:45] 2025-06-04 01:04:32,033 | INFO     | mean x: 1748994891.1386862
[2025-06-03 21:04:45] 2025-06-04 01:04:32,033 | INFO     | mean y: 2279268.131386861
[2025-06-03 21:04:45] 2025-06-04 01:04:32,033 | INFO     | -- intersect: 38527331820.36946
[2025-06-03 21:04:45] 2025-06-04 01:04:32,033 | INFO     | intersect: 38527331820.36946
[2025-06-03 21:04:45] 2025-06-04 01:04:32,033 | INFO     | chi2: 1.829659340741148
[2025-06-03 21:04:45] 2025-06-04 01:04:32,033 | INFO     | current chi2=1.829659340741148 (change=55.95738601116046 %)
[2025-06-03 21:04:45] 2025-06-04 01:04:32,034 | INFO     | sum of square deviations: 713179932.2651511
[2025-06-03 21:04:45] 2025-06-04 01:04:32,034 | INFO     | sum of deviations: -34276498193.27274
[2025-06-03 21:04:45] 2025-06-04 01:04:32,035 | INFO     | mean x: 1748995043.6439395
[2025-06-03 21:04:45] 2025-06-04 01:04:32,035 | INFO     | mean y: 2309457.909090909
[2025-06-03 21:04:45] 2025-06-04 01:04:32,035 | INFO     | -- intersect: 84061636902.94443
[2025-06-03 21:04:45] 2025-06-04 01:04:32,035 | INFO     | intersect: 84061636902.94443
[2025-06-03 21:04:45] 2025-06-04 01:04:32,035 | INFO     | chi2: 1.0132858074939213
[2025-06-03 21:04:45] 2025-06-04 01:04:32,035 | INFO     | current chi2=1.0132858074939213 (change=44.61888150810275 %)
[2025-06-03 21:04:45] 2025-06-04 01:04:32,036 | INFO     | sum of square deviations: 635163372.1574801
[2025-06-03 21:04:45] 2025-06-04 01:04:32,036 | INFO     | sum of deviations: -30718275665.96064
[2025-06-03 21:04:45] 2025-06-04 01:04:32,036 | INFO     | mean x: 1748995196.1496062
[2025-06-03 21:04:45] 2025-06-04 01:04:32,037 | INFO     | mean y: 2302372.7874015747
[2025-06-03 21:04:45] 2025-06-04 01:04:32,037 | INFO     | -- intersect: 84588597692.795
[2025-06-03 21:04:45] 2025-06-04 01:04:32,037 | INFO     | intersect: 84588597692.795
[2025-06-03 21:04:45] 2025-06-04 01:04:32,037 | INFO     | chi2: 0.9843810915893696
[2025-06-03 21:04:45] 2025-06-04 01:04:32,037 | INFO     | current chi2=0.9843810915893696 (change=2.8525728566197333 %)
[2025-06-03 21:04:45] 2025-06-04 01:04:32,037 | INFO     | left removable region: 30
[2025-06-03 21:04:45] 2025-06-04 01:04:32,038 | INFO     | sum of square deviations: 369311127.4433961
[2025-06-03 21:04:45] 2025-06-04 01:04:32,038 | INFO     | sum of deviations: -5394897074.103773
[2025-06-03 21:04:45] 2025-06-04 01:04:32,038 | INFO     | mean x: 1748995470.6698112
[2025-06-03 21:04:45] 2025-06-04 01:04:32,038 | INFO     | mean y: 2274983.3113207547
[2025-06-03 21:04:45] 2025-06-04 01:04:32,039 | INFO     | -- intersect: 25551601408.04383
[2025-06-03 21:04:45] 2025-06-04 01:04:32,039 | INFO     | intersect: 25551601408.04383
[2025-06-03 21:04:45] 2025-06-04 01:04:32,039 | INFO     | chi2: 0.15179737269065707
[2025-06-03 21:04:45] 2025-06-04 01:04:32,039 | INFO     | -- intersect: 25551601408.04383
[2025-06-03 21:04:45] 2025-06-04 01:04:32,039 | INFO     | current memory leak: -14.61 B/s (using 106 data points, chi2=0.15)
[2025-06-03 21:04:45] 2025-06-04 01:04:32,040 | INFO     | ..............................
[2025-06-03 21:04:45] 2025-06-04 01:04:32,040 | INFO     | . Timing measurements:
[2025-06-03 21:04:45] 2025-06-04 01:04:32,040 | INFO     | . get job = 0 s
[2025-06-03 21:04:45] 2025-06-04 01:04:32,040 | INFO     | . initial setup = 2 s
[2025-06-03 21:04:45] 2025-06-04 01:04:32,040 | INFO     | . payload setup = 7 s
[2025-06-03 21:04:45] 2025-06-04 01:04:32,041 | INFO     | . stage-in = 0 s
[2025-06-03 21:04:45] 2025-06-04 01:04:32,041 | INFO     | . payload execution = 8625 s
[2025-06-03 21:04:45] 2025-06-04 01:04:32,041 | INFO     | . stage-out = 0 s
[2025-06-03 21:04:45] 2025-06-04 01:04:32,041 | INFO     | . log creation = 0 s
[2025-06-03 21:04:45] 2025-06-04 01:04:32,041 | INFO     | ..............................
[2025-06-03 21:04:45] 2025-06-04 01:04:32,150 | INFO     | 
[2025-06-03 21:04:45] 2025-06-04 01:04:32,151 | INFO     | job summary report
[2025-06-03 21:04:45] 2025-06-04 01:04:32,151 | INFO     | --------------------------------------------------
[2025-06-03 21:04:45] 2025-06-04 01:04:32,151 | INFO     | PanDA job id: 6677976099
[2025-06-03 21:04:45] 2025-06-04 01:04:32,151 | INFO     | task id: 45006595
[2025-06-03 21:04:45] 2025-06-04 01:04:32,151 | INFO     | errors: (none)
[2025-06-03 21:04:45] 2025-06-04 01:04:32,151 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 21:04:45] 2025-06-04 01:04:32,151 | INFO     | pilot state: finished 
[2025-06-03 21:04:45] 2025-06-04 01:04:32,151 | INFO     | transexitcode: 0
[2025-06-03 21:04:45] 2025-06-04 01:04:32,151 | INFO     | exeerrorcode: 0
[2025-06-03 21:04:45] 2025-06-04 01:04:32,151 | INFO     | exeerrordiag: 
[2025-06-03 21:04:45] 2025-06-04 01:04:32,152 | INFO     | exitcode: 0
[2025-06-03 21:04:45] 2025-06-04 01:04:32,152 | INFO     | exitmsg: OK
[2025-06-03 21:04:45] 2025-06-04 01:04:32,152 | INFO     | cpuconsumptiontime: 42259 s
[2025-06-03 21:04:45] 2025-06-04 01:04:32,152 | INFO     | nevents: 400
[2025-06-03 21:04:45] 2025-06-04 01:04:32,152 | INFO     | neventsw: 0
[2025-06-03 21:04:45] 2025-06-04 01:04:32,152 | INFO     | pid: 1987829
[2025-06-03 21:04:45] 2025-06-04 01:04:32,152 | INFO     | pgrp: 1987829
[2025-06-03 21:04:45] 2025-06-04 01:04:32,152 | INFO     | corecount: 10
[2025-06-03 21:04:45] 2025-06-04 01:04:32,152 | INFO     | event service: False
[2025-06-03 21:04:45] 2025-06-04 01:04:32,153 | INFO     | sizes: {0: 2405182, 5: 2405388, 11: 2405444, 8636: 2433382, 8637: 2442323, 8640: 2442379, 8648: 2442677}
[2025-06-03 21:04:45] 2025-06-04 01:04:32,153 | INFO     | --------------------------------------------------
[2025-06-03 21:04:45] 2025-06-04 01:04:32,153 | INFO     | 
[2025-06-03 21:04:45] 2025-06-04 01:04:32,153 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-03 21:04:45] 2025-06-04 01:04:32,174 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,174 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,174 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,174 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,175 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,175 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,175 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,175 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,175 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,175 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,175 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,175 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,175 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,176 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,176 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,176 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,176 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,176 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 21:04:45] 2025-06-04 01:04:32,176 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,176 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 21:04:45] 2025-06-04 01:04:32,176 | INFO     | job 6677976099 has completed (purged errors)
[2025-06-03 21:04:45] 2025-06-04 01:04:32,177 | INFO     | overall cleanup function is called
[2025-06-03 21:04:45] 2025-06-04 01:04:33,185 | INFO     | --- collectZombieJob: --- 10, [1987829]
[2025-06-03 21:04:45] 2025-06-04 01:04:33,185 | INFO     | zombie collector waiting for pid 1987829
[2025-06-03 21:04:45] 2025-06-04 01:04:33,186 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 21:04:45] 2025-06-04 01:04:33,186 | INFO     | collected zombie processes
[2025-06-03 21:04:45] 2025-06-04 01:04:33,186 | INFO     | will attempt to kill all subprocesses of pid=1987829
[2025-06-03 21:04:45] 2025-06-04 01:04:33,586 | INFO     | process IDs to be killed: [1987829] (in reverse order)
[2025-06-03 21:04:45] 2025-06-04 01:04:33,701 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 21:04:45] 2025-06-04 01:04:33,701 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 21:04:45] 2025-06-04 01:04:33,717 | INFO     | did not find any defunct processes belonging to 1987829
[2025-06-03 21:04:45] 2025-06-04 01:04:33,732 | INFO     | did not find any defunct processes belonging to 1987829
[2025-06-03 21:04:45] 2025-06-04 01:04:33,733 | INFO     | ready for new job
[2025-06-03 21:04:45] 2025-06-04 01:04:33,733 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 21:04:45] 2025-06-04 01:04:33,735 | INFO     | **************************************
[2025-06-03 21:04:45] 2025-06-04 01:04:33,735 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 21:04:45] 2025-06-04 01:04:33,735 | INFO     | **************************************
[2025-06-03 21:04:45] 2025-06-04 01:04:33,735 | INFO     | 
[2025-06-03 21:04:45] 2025-06-04 01:04:33,749 | INFO     | architecture information:
[2025-06-03 21:04:45] 2025-06-04 01:04:33,749 | INFO     | executing command: cat /etc/os-release
[2025-06-03 21:04:45] 2025-06-04 01:04:33,765 | INFO     | cat /etc/os-release:
[2025-06-03 21:04:45] NAME="CentOS Linux"
[2025-06-03 21:04:45] VERSION="7 (Core)"
[2025-06-03 21:04:45] ID="centos"
[2025-06-03 21:04:45] ID_LIKE="rhel fedora"
[2025-06-03 21:04:45] VERSION_ID="7"
[2025-06-03 21:04:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 21:04:45] ANSI_COLOR="0;31"
[2025-06-03 21:04:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 21:04:45] HOME_URL="https://www.centos.org/"
[2025-06-03 21:04:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 21:04:45] 
[2025-06-03 21:04:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 21:04:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 21:04:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 21:04:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 21:04:45] 
[2025-06-03 21:04:45] 2025-06-04 01:04:33,765 | INFO     | **************************************
[2025-06-03 21:04:45] 2025-06-04 01:04:34,268 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-03 21:04:45] 2025-06-04 01:04:34,285 | INFO     | sufficient remaining disk space (76595331072 B)
[2025-06-03 21:04:45] 2025-06-04 01:04:34,285 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 21:04:45] 2025-06-04 01:04:34,285 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 21:04:45] 2025-06-04 01:04:34,286 | INFO     | update_server=False
[2025-06-03 21:04:45] 2025-06-04 01:04:34,286 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 21:04:45] 2025-06-04 01:04:34,286 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 21:04:45] 2025-06-04 01:04:34,286 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 21:04:45] 2025-06-04 01:04:34,286 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 21:04:45] 2025-06-04 01:04:34,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 21:04:45] 2025-06-04 01:04:34,287 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:04:45] 2025-06-04 01:04:34,287 | INFO     | aborting loop
[2025-06-03 21:04:45] 2025-06-04 01:04:34,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 21:04:45] 2025-06-04 01:04:34,599 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 21:04:45] 2025-06-04 01:04:34,825 | INFO     | all payload control threads have been joined
[2025-06-03 21:04:45] 2025-06-04 01:04:34,991 | INFO     | all data control threads have been joined
[2025-06-03 21:04:45] 2025-06-04 01:04:35,291 | INFO     | [job] retrieve thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:35,293 | INFO     | [job] job monitor thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:35,661 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:35,806 | INFO     | all job control threads have been joined
[2025-06-03 21:04:45] 2025-06-04 01:04:35,830 | INFO     | [payload] control thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:35,883 | INFO     | [payload] validate_post thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:35,996 | INFO     | [data] control thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:36,143 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:36,434 | INFO     | [data] copytool_out thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:36,465 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:36,502 | INFO     | [data] copytool_in thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:36,506 | INFO     | [job] validate thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:36,728 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:36,811 | INFO     | [job] control thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:36,854 | INFO     | [payload] failed_post thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:37,163 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 21:04:45] 2025-06-04 01:04:38,168 | INFO     | [job] queue monitor thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:38,606 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 21:04:45] 2025-06-04 01:04:39,736 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140588059608896)>', '<ExcThread(monitor, started 140587407755008)>']
[2025-06-03 21:04:45] 2025-06-04 01:04:40,316 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 21:04:45] 2025-06-04 01:04:40,316 | INFO     | [monitor] control thread has ended
[2025-06-03 21:04:45] 2025-06-04 01:04:44,762 | INFO     | all workflow threads have been joined
[2025-06-03 21:04:45] 2025-06-04 01:04:44,762 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 21:04:45] 2025-06-04 01:04:44,763 | INFO     | traces error code: 0
[2025-06-03 21:04:45] 2025-06-04 01:04:44,763 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 21:04:45] 2025-06-04 01:04:44,928 [wrapper] ==== pilot stdout END ====
[2025-06-03 21:04:45] 2025-06-04 01:04:44,931 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 21:04:45] 2025-06-04 01:04:44,934 [wrapper] pilotpid: 1978953
[2025-06-03 21:04:45] 2025-06-04 01:04:44,937 [wrapper] Pilot exit status: 0
[2025-06-03 21:04:45] 2025-06-04 01:04:44,950 [wrapper] pandaids: 6677976099
[2025-06-03 21:04:45] 2025-06-04 01:04:45,024 [wrapper] cleanup supervisor_pilot 2594811 1978954
[2025-06-03 21:04:45] 2025-06-04 01:04:45,028 [wrapper] Test setup, not cleaning
[2025-06-03 21:04:45] 2025-06-04 01:04:45,030 [wrapper] apfmon messages muted
[2025-06-03 21:04:45] 2025-06-04 01:04:45,033 [wrapper] ==== wrapper stdout END ====
[2025-06-03 21:04:45] 2025-06-04 01:04:45,037 [wrapper] ==== wrapper stderr END ====
[2025-06-03 21:04:45]  *** Error codes and diagnostics ***
[2025-06-03 21:04:45]     "exeErrorCode": 0,
[2025-06-03 21:04:45]     "exeErrorDiag": "",
[2025-06-03 21:04:45]     "pilotErrorCode": 0,
[2025-06-03 21:04:45]     "pilotErrorDiag": "",
[2025-06-03 21:04:45]  *** Listing of results directory ***
[2025-06-03 21:04:45] total 390368
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 14:57 pilot3.tar.gz
[2025-06-03 21:04:45] -rwx------. 1 boincer umatlas     37140 Jun  3 15:04 runpilot2-wrapper.sh
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 15:04 queuedata.json
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas       100 Jun  3 18:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 21:04:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  3 18:39 run_atlas
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas       105 Jun  3 18:39 job.xml
[2025-06-03 21:04:45] -rw-r--r--. 2 boincer umatlas 216329724 Jun  3 18:39 EVNT.45006593._001727.pool.root.1
[2025-06-03 21:04:45] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 18:39 start_atlas.sh
[2025-06-03 21:04:45] drwxrwx--x. 2 boincer umatlas      4096 Jun  3 18:39 shared
[2025-06-03 21:04:45] -rw-r--r--. 2 boincer umatlas    508879 Jun  3 18:39 input.tar.gz
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas         0 Jun  3 18:39 boinc_lockfile
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas      2524 Jun  3 18:39 pandaJob.out
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas    986861 Jun  3 18:40 agis_schedconf.cvmfs.json
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas   1603667 Jun  3 18:40 agis_ddmendpoints.agis.ALL.json
[2025-06-03 21:04:45] drwx------. 4 boincer umatlas      4096 Jun  3 18:40 pilot3
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas      6673 Jun  3 21:03 init_data.xml
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas 177319028 Jun  3 21:03 HITS.45006595._043074.pool.root.1
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas        95 Jun  3 21:03 pilot_heartbeat.json
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas       529 Jun  3 21:03 boinc_task_state.xml
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas      1048 Jun  3 21:04 memory_monitor_summary.json
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas    359128 Jun  3 21:04 log.45006595._043074.job.log.tgz.1
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas      8192 Jun  3 21:04 boinc_mmap_file
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas        27 Jun  3 21:04 wrapper_checkpoint.txt
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas      7723 Jun  3 21:04 heartbeat.json
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas      4476 Jun  3 21:04 pilotlog.txt
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas    770347 Jun  3 21:04 log.45006595._043074.job.log.1
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas       357 Jun  3 21:04 output.list
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas       620 Jun  3 21:04 runtime_log
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas   1146880 Jun  3 21:04 result.tar.gz
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas       655 Jun  3 21:04 u0PMDml6lg7n9Rq4apOajLDm4fhM0noT9bVof3QYDm5dZKDmkCfk2n.diag
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas      8651 Jun  3 21:04 runtime_log.err
[2025-06-03 21:04:45] -rw-r--r--. 1 boincer umatlas     20923 Jun  3 21:04 stderr.txt
[2025-06-03 21:04:45] HITS file was successfully produced:
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas 177319028 Jun  3 21:03 shared/HITS.pool.root.1
[2025-06-03 21:04:45]  *** Contents of shared directory: ***
[2025-06-03 21:04:45] total 386064
[2025-06-03 21:04:45] -rw-r--r--. 2 boincer umatlas 216329724 Jun  3 18:39 ATLAS.root_0
[2025-06-03 21:04:45] -rw-r--r--. 2 boincer umatlas     15093 Jun  3 18:39 start_atlas.sh
[2025-06-03 21:04:45] -rw-r--r--. 2 boincer umatlas    508879 Jun  3 18:39 input.tar.gz
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas 177319028 Jun  3 21:03 HITS.pool.root.1
[2025-06-03 21:04:45] -rw-------. 1 boincer umatlas   1146880 Jun  3 21:04 result.tar.gz
21:04:46 (1973087): run_atlas exited; CPU time 42552.676193
21:04:46 (1973087): called boinc_finish(0)

</stderr_txt>
]]>

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