Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:05:46 (30396): wrapper (7.7.26015): starting
09:05:46 (30396): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:05:46] Arguments: --nthreads 8
[2025-06-04 09:05:46] Threads: 8
[2025-06-04 09:05:46] Checking for CVMFS
[2025-06-04 09:05:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:05:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:05:47] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:05:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:05:48] 2.11.2.0 22385 33067 89000 146771 3 16 16595940 25165825 3909 130560 0 18871394 99.804 20237992 2330 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 09:05:48] CVMFS is ok
[2025-06-04 09:05:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:05:48] Checking for apptainer binary...
[2025-06-04 09:05:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:05:48] Running /usr/bin/apptainer --version
[2025-06-04 09:05:48] apptainer version 1.3.2-1.el7
[2025-06-04 09:05:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:06:07] cg-vwn497.simple-grid.lan
[2025-06-04 09:06:07] apptainer works
[2025-06-04 09:06:07] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:06:07] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:06:07] Starting ATLAS job with PandaID=6678071640
[2025-06-04 09:06:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 13:11:54]  *** The last 200 lines of the pilot log: ***
[2025-06-04 13:11:54] 2025-06-04 10:45:03,977 | INFO     | extracted standard info from prmon json
[2025-06-04 13:11:54] 2025-06-04 10:45:03,977 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 13:11:54] 2025-06-04 10:45:03,977 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 13:11:54] 2025-06-04 10:45:03,977 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 13:11:54] 2025-06-04 10:45:03,977 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 13:11:54] 2025-06-04 10:45:03,981 | INFO     | fitting pss+swap vs Time
[2025-06-04 13:11:54] 2025-06-04 10:45:03,982 | INFO     | sum of square deviations: 2593916542.0
[2025-06-04 13:11:54] 2025-06-04 10:45:03,990 | INFO     | sum of deviations: 31636520035.999794
[2025-06-04 13:11:54] 2025-06-04 10:45:03,991 | INFO     | mean x: 1749027596.0
[2025-06-04 13:11:54] 2025-06-04 10:45:03,991 | INFO     | mean y: 2473655.0591133004
[2025-06-04 13:11:54] 2025-06-04 10:45:03,991 | INFO     | -- intersect: -21329417980.01515
[2025-06-04 13:11:54] 2025-06-04 10:45:03,991 | INFO     | intersect: -21329417980.01515
[2025-06-04 13:11:54] 2025-06-04 10:45:03,991 | INFO     | chi2: 7.140112684891585
[2025-06-04 13:11:54] 2025-06-04 10:45:03,992 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 13:11:54] 2025-06-04 10:45:03,993 | INFO     | sum of deviations: 44703697805.00001
[2025-06-04 13:11:54] 2025-06-04 10:45:03,993 | INFO     | mean x: 1749027443.5
[2025-06-04 13:11:54] 2025-06-04 10:45:03,993 | INFO     | mean y: 2484093.616161616
[2025-06-04 13:11:54] 2025-06-04 10:45:03,993 | INFO     | -- intersect: -32482088403.997494
[2025-06-04 13:11:54] 2025-06-04 10:45:03,994 | INFO     | intersect: -32482088403.997494
[2025-06-04 13:11:54] 2025-06-04 10:45:03,994 | INFO     | chi2: 6.443707587961254
[2025-06-04 13:11:54] 2025-06-04 10:45:03,994 | INFO     | current chi2=6.443707587961254 (change=9.753418855754447 %)
[2025-06-04 13:11:54] 2025-06-04 10:45:03,994 | INFO     | right removable region: 197
[2025-06-04 13:11:54] 2025-06-04 10:45:03,994 | INFO     | sum of square deviations: 2406926989.5
[2025-06-04 13:11:54] 2025-06-04 10:45:03,996 | INFO     | sum of deviations: -39372184863.49999
[2025-06-04 13:11:54] 2025-06-04 10:45:03,996 | INFO     | mean x: 1749027748.5
[2025-06-04 13:11:54] 2025-06-04 10:45:03,996 | INFO     | mean y: 2531514.227272727
[2025-06-04 13:11:54] 2025-06-04 10:45:03,996 | INFO     | -- intersect: 28612889927.981384
[2025-06-04 13:11:54] 2025-06-04 10:45:03,996 | INFO     | intersect: 28612889927.981384
[2025-06-04 13:11:54] 2025-06-04 10:45:03,996 | INFO     | chi2: 2.2199080093504437
[2025-06-04 13:11:54] 2025-06-04 10:45:03,997 | INFO     | current chi2=2.2199080093504437 (change=68.90934208856747 %)
[2025-06-04 13:11:54] 2025-06-04 10:45:03,997 | INFO     | sum of square deviations: 2229146912.0
[2025-06-04 13:11:54] 2025-06-04 10:45:03,998 | INFO     | sum of deviations: -70122942169.0
[2025-06-04 13:11:54] 2025-06-04 10:45:03,998 | INFO     | mean x: 1749027901.0
[2025-06-04 13:11:54] 2025-06-04 10:45:03,998 | INFO     | mean y: 2557675.3886010363
[2025-06-04 13:11:54] 2025-06-04 10:45:03,998 | INFO     | -- intersect: 55022252291.994675
[2025-06-04 13:11:54] 2025-06-04 10:45:03,999 | INFO     | intersect: 55022252291.994675
[2025-06-04 13:11:54] 2025-06-04 10:45:03,999 | INFO     | chi2: 0.9947645132321128
[2025-06-04 13:11:54] 2025-06-04 10:45:03,999 | INFO     | current chi2=0.9947645132321128 (change=55.18893084568914 %)
[2025-06-04 13:11:54] 2025-06-04 10:45:03,999 | INFO     | sum of square deviations: 2060343747.0
[2025-06-04 13:11:54] 2025-06-04 10:45:04,001 | INFO     | sum of deviations: -67480963117.0
[2025-06-04 13:11:54] 2025-06-04 10:45:04,001 | INFO     | mean x: 1749028053.5
[2025-06-04 13:11:54] 2025-06-04 10:45:04,001 | INFO     | mean y: 2555252.510638298
[2025-06-04 13:11:54] 2025-06-04 10:45:04,009 | INFO     | -- intersect: 57287218426.16105
[2025-06-04 13:11:54] 2025-06-04 10:45:04,009 | INFO     | intersect: 57287218426.16105
[2025-06-04 13:11:54] 2025-06-04 10:45:04,010 | INFO     | chi2: 0.9826854031496997
[2025-06-04 13:11:54] 2025-06-04 10:45:04,010 | INFO     | current chi2=0.9826854031496997 (change=1.214268293826306 %)
[2025-06-04 13:11:54] 2025-06-04 10:45:04,010 | INFO     | left removable region: 30
[2025-06-04 13:11:54] 2025-06-04 10:45:04,010 | INFO     | sum of square deviations: 1444149868.0
[2025-06-04 13:11:54] 2025-06-04 10:45:04,011 | INFO     | sum of deviations: -37150748381.99999
[2025-06-04 13:11:54] 2025-06-04 10:45:04,012 | INFO     | mean x: 1749028328.0
[2025-06-04 13:11:54] 2025-06-04 10:45:04,012 | INFO     | mean y: 2552385.3113772455
[2025-06-04 13:11:54] 2025-06-04 10:45:04,012 | INFO     | -- intersect: 44996297678.869896
[2025-06-04 13:11:54] 2025-06-04 10:45:04,012 | INFO     | intersect: 44996297678.869896
[2025-06-04 13:11:54] 2025-06-04 10:45:04,012 | INFO     | chi2: 0.17764747946890763
[2025-06-04 13:11:54] 2025-06-04 10:45:04,012 | INFO     | -- intersect: 44996297678.869896
[2025-06-04 13:11:54] 2025-06-04 10:45:04,012 | INFO     | current memory leak: -25.72 B/s (using 167 data points, chi2=0.18)
[2025-06-04 13:11:54] 2025-06-04 10:45:04,013 | INFO     | ..............................
[2025-06-04 13:11:54] 2025-06-04 10:45:04,013 | INFO     | . Timing measurements:
[2025-06-04 13:11:54] 2025-06-04 10:45:04,013 | INFO     | . get job = 0 s
[2025-06-04 13:11:54] 2025-06-04 10:45:04,013 | INFO     | . initial setup = 3 s
[2025-06-04 13:11:54] 2025-06-04 10:45:04,013 | INFO     | . payload setup = 138 s
[2025-06-04 13:11:54] 2025-06-04 10:45:04,014 | INFO     | . stage-in = 0 s
[2025-06-04 13:11:54] 2025-06-04 10:45:04,014 | INFO     | . payload execution = 12515 s
[2025-06-04 13:11:54] 2025-06-04 10:45:04,014 | INFO     | . stage-out = 3 s
[2025-06-04 13:11:54] 2025-06-04 10:45:04,014 | INFO     | . log creation = 1 s
[2025-06-04 13:11:54] 2025-06-04 10:45:04,014 | INFO     | ..............................
[2025-06-04 13:11:54] 2025-06-04 10:45:04,134 | INFO     | 
[2025-06-04 13:11:54] 2025-06-04 10:45:04,134 | INFO     | job summary report
[2025-06-04 13:11:54] 2025-06-04 10:45:04,134 | INFO     | --------------------------------------------------
[2025-06-04 13:11:54] 2025-06-04 10:45:04,134 | INFO     | PanDA job id: 6678071640
[2025-06-04 13:11:54] 2025-06-04 10:45:04,134 | INFO     | task id: 45006595
[2025-06-04 13:11:54] 2025-06-04 10:45:04,134 | INFO     | errors: (none)
[2025-06-04 13:11:54] 2025-06-04 10:45:04,134 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | pilot state: finished 
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | transexitcode: 0
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | exeerrorcode: 0
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | exeerrordiag: 
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | exitcode: 0
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | exitmsg: OK
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | cpuconsumptiontime: 46242 s
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | nevents: 400
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | neventsw: 0
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | pid: 14727
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | pgrp: 14727
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | corecount: 8
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | event service: False
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | sizes: {0: 2404356, 1: 2405042, 2: 2405241, 13: 2405241, 23: 2405297, 34: 2405325, 45: 2405481, 56: 2405509, 66: 2405537, 77: 2405565, 88: 2405621, 89: 2406135, 98
[2025-06-04 13:11:54] 2025-06-04 10:45:04,135 | INFO     | --------------------------------------------------
[2025-06-04 13:11:54] 2025-06-04 10:45:04,136 | INFO     | 
[2025-06-04 13:11:54] 2025-06-04 10:45:04,136 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-06-04 13:11:54] 2025-06-04 10:45:04,434 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,434 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,434 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,434 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,434 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,434 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,435 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,435 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,435 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,435 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,435 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,435 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,435 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,435 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,435 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,435 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,435 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,436 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 13:11:54] 2025-06-04 10:45:04,436 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,436 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 13:11:54] 2025-06-04 10:45:04,436 | INFO     | job 6678071640 has completed (purged errors)
[2025-06-04 13:11:54] 2025-06-04 10:45:04,436 | INFO     | overall cleanup function is called
[2025-06-04 13:11:54] 2025-06-04 10:45:05,445 | INFO     | --- collectZombieJob: --- 10, [14727]
[2025-06-04 13:11:54] 2025-06-04 10:45:05,445 | INFO     | zombie collector waiting for pid 14727
[2025-06-04 13:11:54] 2025-06-04 10:45:05,445 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 13:11:54] 2025-06-04 10:45:05,445 | INFO     | collected zombie processes
[2025-06-04 13:11:54] 2025-06-04 10:45:05,446 | INFO     | will attempt to kill all subprocesses of pid=14727
[2025-06-04 13:11:54] 2025-06-04 10:45:05,540 | INFO     | process IDs to be killed: [14727] (in reverse order)
[2025-06-04 13:11:54] 2025-06-04 10:45:06,316 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 13:11:54] 2025-06-04 10:45:06,317 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 13:11:54] 2025-06-04 10:45:06,320 | INFO     | did not find any defunct processes belonging to 14727
[2025-06-04 13:11:54] 2025-06-04 10:45:06,323 | INFO     | did not find any defunct processes belonging to 14727
[2025-06-04 13:11:54] 2025-06-04 10:45:06,323 | INFO     | ready for new job
[2025-06-04 13:11:54] 2025-06-04 10:45:06,323 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 13:11:54] 2025-06-04 10:45:06,325 | INFO     | **************************************
[2025-06-04 13:11:54] 2025-06-04 10:45:06,325 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 13:11:54] 2025-06-04 10:45:06,325 | INFO     | **************************************
[2025-06-04 13:11:54] 2025-06-04 10:45:06,325 | INFO     | 
[2025-06-04 13:11:54] 2025-06-04 10:45:06,326 | INFO     | pilot is running in a VM
[2025-06-04 13:11:54] 2025-06-04 10:45:06,326 | INFO     | architecture information:
[2025-06-04 13:11:54] 2025-06-04 10:45:06,335 | INFO     | executing command: cat /etc/os-release
[2025-06-04 13:11:54] 2025-06-04 10:45:06,608 | INFO     | cat /etc/os-release:
[2025-06-04 13:11:54] NAME="CentOS Linux"
[2025-06-04 13:11:54] VERSION="7 (Core)"
[2025-06-04 13:11:54] ID="centos"
[2025-06-04 13:11:54] ID_LIKE="rhel fedora"
[2025-06-04 13:11:54] VERSION_ID="7"
[2025-06-04 13:11:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 13:11:54] ANSI_COLOR="0;31"
[2025-06-04 13:11:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 13:11:54] HOME_URL="https://www.centos.org/"
[2025-06-04 13:11:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 13:11:54] 
[2025-06-04 13:11:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 13:11:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 13:11:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 13:11:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 13:11:54] 
[2025-06-04 13:11:54] 2025-06-04 10:45:06,609 | INFO     | **************************************
[2025-06-04 13:11:54] 2025-06-04 10:45:07,112 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-06-04 13:11:54] 2025-06-04 10:45:07,272 | INFO     | sufficient remaining disk space (497127784448 B)
[2025-06-04 13:11:54] 2025-06-04 10:45:07,272 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 13:11:54] 2025-06-04 10:45:07,272 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 13:11:54] 2025-06-04 10:45:07,272 | INFO     | update_server=False
[2025-06-04 13:11:54] 2025-06-04 10:45:07,272 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 13:11:54] 2025-06-04 10:45:07,273 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 13:11:54] 2025-06-04 10:45:07,273 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 13:11:54] 2025-06-04 10:45:07,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 13:11:54] 2025-06-04 10:45:07,274 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 13:11:54] 2025-06-04 10:45:07,353 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 13:11:54] 2025-06-04 10:45:07,579 | INFO     | all job control threads have been joined
[2025-06-04 13:11:54] 2025-06-04 10:45:07,965 | INFO     | all data control threads have been joined
[2025-06-04 13:11:54] 2025-06-04 10:45:08,175 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:11:54] 2025-06-04 10:45:08,175 | INFO     | aborting loop
[2025-06-04 13:11:54] 2025-06-04 10:45:08,278 | INFO     | [job] retrieve thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:08,552 | INFO     | [data] copytool_in thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:08,585 | INFO     | [job] control thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:08,719 | INFO     | all payload control threads have been joined
[2025-06-04 13:11:54] 2025-06-04 10:45:08,870 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:08,954 | INFO     | [job] validate thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:08,971 | INFO     | [data] control thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:09,162 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 13:11:54] 2025-06-04 10:45:09,165 | INFO     | [payload] validate_post thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:09,181 | INFO     | [job] job monitor thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:09,183 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:09,225 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:09,360 | INFO     | [data] copytool_out thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:09,471 | INFO     | [payload] failed_post thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:09,479 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:09,725 | INFO     | [payload] control thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:10,168 | INFO     | [job] queue monitor thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:10,438 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 13:11:54] 2025-06-04 10:45:14,447 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 13:11:54] 2025-06-04 10:45:14,871 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140500049536832)>', '<ExcThread(monitor, started 140499251885824)>']
[2025-06-04 13:11:54] 2025-06-04 10:45:15,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 13:11:54] 2025-06-04 10:45:15,320 | INFO     | [monitor] control thread has ended
[2025-06-04 13:11:54] 2025-06-04 10:45:19,897 | INFO     | all workflow threads have been joined
[2025-06-04 13:11:54] 2025-06-04 10:45:19,897 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 13:11:54] 2025-06-04 10:45:19,898 | INFO     | traces error code: 0
[2025-06-04 13:11:54] 2025-06-04 10:45:19,898 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 13:11:54] 2025-06-04 10:45:20,126 [wrapper] ==== pilot stdout END ====
[2025-06-04 13:11:54] 2025-06-04 10:45:20,139 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 13:11:54] 2025-06-04 10:45:20,154 [wrapper] pilotpid: 4109
[2025-06-04 13:11:54] 2025-06-04 10:45:20,173 [wrapper] Pilot exit status: 0
[2025-06-04 13:11:54] 2025-06-04 10:45:20,743 [wrapper] pandaids: 6678071640
[2025-06-04 13:11:54] 2025-06-04 10:45:21,785 [wrapper] cleanup supervisor_pilot 12126 4111
[2025-06-04 13:11:54] 2025-06-04 10:45:21,833 [wrapper] Test setup, not cleaning
[2025-06-04 13:11:54] 2025-06-04 10:45:21,941 [wrapper] apfmon messages muted
[2025-06-04 13:11:54] 2025-06-04 10:45:22,017 [wrapper] ==== wrapper stdout END ====
[2025-06-04 13:11:54] 2025-06-04 10:45:22,147 [wrapper] ==== wrapper stderr END ====
[2025-06-04 13:11:54]  *** Error codes and diagnostics ***
[2025-06-04 13:11:54]     "exeErrorCode": 0,
[2025-06-04 13:11:54]     "exeErrorDiag": "",
[2025-06-04 13:11:54]     "pilotErrorCode": 0,
[2025-06-04 13:11:54]     "pilotErrorDiag": "",
[2025-06-04 13:11:54]  *** Listing of results directory ***
[2025-06-04 13:11:54] total 392412
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc    495897 Jun  3 22:49 pilot3.tar.gz
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc      5111 Jun  3 22:52 queuedata.json
[2025-06-04 13:11:54] -rwx------. 1 boinc boinc     37140 Jun  3 22:53 runpilot2-wrapper.sh
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc       100 Jun  4 09:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 13:11:54] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 09:05 run_atlas
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc       105 Jun  4 09:05 job.xml
[2025-06-04 13:11:54] -rw-r--r--. 2 boinc boinc 213222309 Jun  4 09:05 EVNT.45006593._001821.pool.root.1
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc      6392 Jun  4 09:05 init_data.xml
[2025-06-04 13:11:54] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:05 start_atlas.sh
[2025-06-04 13:11:54] drwxrwx--x. 2 boinc boinc        68 Jun  4 09:05 shared
[2025-06-04 13:11:54] -rw-r--r--. 2 boinc boinc    508883 Jun  4 09:05 input.tar.gz
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc         0 Jun  4 09:05 boinc_lockfile
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc      2525 Jun  4 09:06 pandaJob.out
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc    986745 Jun  4 09:09 agis_schedconf.cvmfs.json
[2025-06-04 13:11:54] drwx------. 4 boinc boinc      4096 Jun  4 09:09 pilot3
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc 181793991 Jun  4 12:42 HITS.45006595._045409.pool.root.1
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc       530 Jun  4 12:42 boinc_task_state.xml
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc      1029 Jun  4 12:43 memory_monitor_summary.json
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc   1603667 Jun  4 12:43 agis_ddmendpoints.agis.ALL.json
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc    388847 Jun  4 12:43 log.45006595._045409.job.log.tgz.1
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc        95 Jun  4 12:44 pilot_heartbeat.json
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc      7707 Jun  4 12:45 heartbeat.json
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc      4540 Jun  4 12:45 pilotlog.txt
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc   1109157 Jun  4 12:45 log.45006595._045409.job.log.1
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc       357 Jun  4 12:45 output.list
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc       620 Jun  4 12:45 runtime_log
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc   1515520 Jun  4 12:45 result.tar.gz
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc      8673 Jun  4 12:45 runtime_log.err
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc       657 Jun  4 12:45 k8BLDmHong7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmS8lKDmMAQccm.diag
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc      8192 Jun  4 13:11 boinc_mmap_file
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc        28 Jun  4 13:11 wrapper_checkpoint.txt
[2025-06-04 13:11:54] -rw-r--r--. 1 boinc boinc     20516 Jun  4 13:11 stderr.txt
[2025-06-04 13:11:54] HITS file was successfully produced:
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc 181793991 Jun  4 12:42 shared/HITS.pool.root.1
[2025-06-04 13:11:54]  *** Contents of shared directory: ***
[2025-06-04 13:11:54] total 387760
[2025-06-04 13:11:54] -rw-r--r--. 2 boinc boinc 213222309 Jun  4 09:05 ATLAS.root_0
[2025-06-04 13:11:54] -rw-r--r--. 2 boinc boinc     15093 Jun  4 09:05 start_atlas.sh
[2025-06-04 13:11:54] -rw-r--r--. 2 boinc boinc    508883 Jun  4 09:05 input.tar.gz
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc 181793991 Jun  4 12:42 HITS.pool.root.1
[2025-06-04 13:11:54] -rw-------. 1 boinc boinc   1515520 Jun  4 12:45 result.tar.gz
13:11:56 (30396): run_atlas exited; CPU time 46406.306207
13:11:56 (30396): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN