Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:50:49 (16054): wrapper (7.7.26015): starting
12:50:49 (16054): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 12:50:49] Arguments: --nthreads 8
[2025-06-04 12:50:49] Threads: 8
[2025-06-04 12:50:49] Checking for CVMFS
[2025-06-04 12:50:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 12:50:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 12:50:50] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 12:50:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 12:50:51] 2.11.2.0 26010 33145 94768 146777 1 16 13365917 25165824 4294 130560 0 16937236 99.778 20144926 2068 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 12:50:51] CVMFS is ok
[2025-06-04 12:50:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 12:50:51] Checking for apptainer binary...
[2025-06-04 12:50:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 12:50:51] Running /usr/bin/apptainer --version
[2025-06-04 12:50:51] apptainer version 1.3.2-1.el7
[2025-06-04 12:50:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 14:40:39] cg-vwn216.simple-grid.lan
[2025-06-04 14:40:39] apptainer works
[2025-06-04 14:40:39] Set ATHENA_PROC_NUMBER=8
[2025-06-04 14:40:39] Set ATHENA_CORE_NUMBER=8
[2025-06-04 14:40:39] Starting ATLAS job with PandaID=6677975856
[2025-06-04 14:40:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:53:10]  *** The last 200 lines of the pilot log: ***
[2025-06-04 18:53:10] 2025-06-04 16:44:16,073 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 18:53:10] 2025-06-04 16:44:16,073 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 18:53:10] 2025-06-04 16:44:16,073 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 18:53:10] 2025-06-04 16:44:16,074 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 18:53:10] 2025-06-04 16:44:16,079 | INFO     | fitting pss+swap vs Time
[2025-06-04 18:53:10] 2025-06-04 16:44:16,080 | INFO     | sum of square deviations: 3627000098.0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,082 | INFO     | sum of deviations: 61165086434.999985
[2025-06-04 18:53:10] 2025-06-04 16:44:16,082 | INFO     | mean x: 1749048417.0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,082 | INFO     | mean y: 2437416.585903084
[2025-06-04 18:53:10] 2025-06-04 16:44:16,082 | INFO     | -- intersect: -29493204908.81579
[2025-06-04 18:53:10] 2025-06-04 16:44:16,083 | INFO     | intersect: -29493204908.81579
[2025-06-04 18:53:10] 2025-06-04 16:44:16,083 | INFO     | chi2: 6.647403978959816
[2025-06-04 18:53:10] 2025-06-04 16:44:16,084 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 18:53:10] 2025-06-04 16:44:16,085 | INFO     | sum of deviations: 74752870046.0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,086 | INFO     | mean x: 1749048264.5
[2025-06-04 18:53:10] 2025-06-04 16:44:16,086 | INFO     | mean y: 2446081.4594594594
[2025-06-04 18:53:10] 2025-06-04 16:44:16,086 | INFO     | -- intersect: -38536615037.31203
[2025-06-04 18:53:10] 2025-06-04 16:44:16,086 | INFO     | intersect: -38536615037.31203
[2025-06-04 18:53:10] 2025-06-04 16:44:16,086 | INFO     | chi2: 5.934975157256406
[2025-06-04 18:53:10] 2025-06-04 16:44:16,086 | INFO     | current chi2=5.934975157256406 (change=10.717399212660624 %)
[2025-06-04 18:53:10] 2025-06-04 16:44:16,086 | INFO     | right removable region: 221
[2025-06-04 18:53:10] 2025-06-04 16:44:16,087 | INFO     | sum of square deviations: 3392567795.5
[2025-06-04 18:53:10] 2025-06-04 16:44:16,088 | INFO     | sum of deviations: -16692393738.999992
[2025-06-04 18:53:10] 2025-06-04 16:44:16,088 | INFO     | mean x: 1749048569.5
[2025-06-04 18:53:10] 2025-06-04 16:44:16,089 | INFO     | mean y: 2488014.3333333335
[2025-06-04 18:53:10] 2025-06-04 16:44:16,089 | INFO     | -- intersect: 8608302002.62116
[2025-06-04 18:53:10] 2025-06-04 16:44:16,089 | INFO     | intersect: 8608302002.62116
[2025-06-04 18:53:10] 2025-06-04 16:44:16,089 | INFO     | chi2: 1.8984988980462756
[2025-06-04 18:53:10] 2025-06-04 16:44:16,089 | INFO     | current chi2=1.8984988980462756 (change=71.43999516118843 %)
[2025-06-04 18:53:10] 2025-06-04 16:44:16,090 | INFO     | sum of square deviations: 3168461268.0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,091 | INFO     | sum of deviations: -47080299651.0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,091 | INFO     | mean x: 1749048722.0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,091 | INFO     | mean y: 2508548.9216589862
[2025-06-04 18:53:10] 2025-06-04 16:44:16,092 | INFO     | -- intersect: 25991697297.29382
[2025-06-04 18:53:10] 2025-06-04 16:44:16,092 | INFO     | intersect: 25991697297.29382
[2025-06-04 18:53:10] 2025-06-04 16:44:16,092 | INFO     | chi2: 0.9724098631476096
[2025-06-04 18:53:10] 2025-06-04 16:44:16,092 | INFO     | current chi2=0.9724098631476096 (change=48.78006702304089 %)
[2025-06-04 18:53:10] 2025-06-04 16:44:16,093 | INFO     | sum of square deviations: 2954447953.0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,094 | INFO     | sum of deviations: -44694352452.5
[2025-06-04 18:53:10] 2025-06-04 16:44:16,095 | INFO     | mean x: 1749048874.5
[2025-06-04 18:53:10] 2025-06-04 16:44:16,095 | INFO     | mean y: 2506811.0896226414
[2025-06-04 18:53:10] 2025-06-04 16:44:16,095 | INFO     | -- intersect: 26461800762.832302
[2025-06-04 18:53:10] 2025-06-04 16:44:16,095 | INFO     | intersect: 26461800762.832302
[2025-06-04 18:53:10] 2025-06-04 16:44:16,095 | INFO     | chi2: 0.9587799876615625
[2025-06-04 18:53:10] 2025-06-04 16:44:16,096 | INFO     | current chi2=0.9587799876615625 (change=1.4016595267687162 %)
[2025-06-04 18:53:10] 2025-06-04 16:44:16,096 | INFO     | left removable region: 30
[2025-06-04 18:53:10] 2025-06-04 16:44:16,096 | INFO     | sum of square deviations: 2160561440.0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,098 | INFO     | sum of deviations: -7877084025.000001
[2025-06-04 18:53:10] 2025-06-04 16:44:16,098 | INFO     | mean x: 1749049149.0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,098 | INFO     | mean y: 2499748.5863874345
[2025-06-04 18:53:10] 2025-06-04 16:44:16,098 | INFO     | -- intersect: 6379271478.127088
[2025-06-04 18:53:10] 2025-06-04 16:44:16,098 | INFO     | intersect: 6379271478.127088
[2025-06-04 18:53:10] 2025-06-04 16:44:16,099 | INFO     | chi2: 0.07985052718980207
[2025-06-04 18:53:10] 2025-06-04 16:44:16,099 | INFO     | -- intersect: 6379271478.127088
[2025-06-04 18:53:10] 2025-06-04 16:44:16,099 | INFO     | current memory leak: -3.65 B/s (using 191 data points, chi2=0.08)
[2025-06-04 18:53:10] 2025-06-04 16:44:16,100 | INFO     | ..............................
[2025-06-04 18:53:10] 2025-06-04 16:44:16,100 | INFO     | . Timing measurements:
[2025-06-04 18:53:10] 2025-06-04 16:44:16,100 | INFO     | . get job = 0 s
[2025-06-04 18:53:10] 2025-06-04 16:44:16,100 | INFO     | . initial setup = 6 s
[2025-06-04 18:53:10] 2025-06-04 16:44:16,100 | INFO     | . payload setup = 148 s
[2025-06-04 18:53:10] 2025-06-04 16:44:16,100 | INFO     | . stage-in = 0 s
[2025-06-04 18:53:10] 2025-06-04 16:44:16,101 | INFO     | . payload execution = 13987 s
[2025-06-04 18:53:10] 2025-06-04 16:44:16,101 | INFO     | . stage-out = 3 s
[2025-06-04 18:53:10] 2025-06-04 16:44:16,101 | INFO     | . log creation = 1 s
[2025-06-04 18:53:10] 2025-06-04 16:44:16,101 | INFO     | ..............................
[2025-06-04 18:53:10] 2025-06-04 16:44:16,548 | INFO     | 
[2025-06-04 18:53:10] 2025-06-04 16:44:16,549 | INFO     | job summary report
[2025-06-04 18:53:10] 2025-06-04 16:44:16,549 | INFO     | --------------------------------------------------
[2025-06-04 18:53:10] 2025-06-04 16:44:16,549 | INFO     | PanDA job id: 6677975856
[2025-06-04 18:53:10] 2025-06-04 16:44:16,549 | INFO     | task id: 45006595
[2025-06-04 18:53:10] 2025-06-04 16:44:16,549 | INFO     | errors: (none)
[2025-06-04 18:53:10] 2025-06-04 16:44:16,549 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 18:53:10] 2025-06-04 16:44:16,550 | INFO     | pilot state: finished 
[2025-06-04 18:53:10] 2025-06-04 16:44:16,550 | INFO     | transexitcode: 0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,550 | INFO     | exeerrorcode: 0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,550 | INFO     | exeerrordiag: 
[2025-06-04 18:53:10] 2025-06-04 16:44:16,550 | INFO     | exitcode: 0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,550 | INFO     | exitmsg: OK
[2025-06-04 18:53:10] 2025-06-04 16:44:16,550 | INFO     | cpuconsumptiontime: 51119 s
[2025-06-04 18:53:10] 2025-06-04 16:44:16,550 | INFO     | nevents: 400
[2025-06-04 18:53:10] 2025-06-04 16:44:16,551 | INFO     | neventsw: 0
[2025-06-04 18:53:10] 2025-06-04 16:44:16,551 | INFO     | pid: 29498
[2025-06-04 18:53:10] 2025-06-04 16:44:16,551 | INFO     | pgrp: 29498
[2025-06-04 18:53:10] 2025-06-04 16:44:16,551 | INFO     | corecount: 8
[2025-06-04 18:53:10] 2025-06-04 16:44:16,551 | INFO     | event service: False
[2025-06-04 18:53:10] 2025-06-04 16:44:16,551 | INFO     | sizes: {0: 2396508, 1: 2397194, 2: 2397393, 13: 2397393, 23: 2397449, 34: 2397477, 45: 2397633, 56: 2397661, 66: 2397689, 77: 2397717, 88: 2397773, 92: 2398287, 98
[2025-06-04 18:53:10] 2025-06-04 16:44:16,551 | INFO     | --------------------------------------------------
[2025-06-04 18:53:10] 2025-06-04 16:44:16,551 | INFO     | 
[2025-06-04 18:53:10] 2025-06-04 16:44:16,552 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-06-04 18:53:10] 2025-06-04 16:44:16,687 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,687 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,687 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,687 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,687 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,688 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,688 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,688 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,688 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,688 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,688 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,688 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,689 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,689 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,689 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,689 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,689 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,689 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 18:53:10] 2025-06-04 16:44:16,689 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,689 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 18:53:10] 2025-06-04 16:44:16,690 | INFO     | job 6677975856 has completed (purged errors)
[2025-06-04 18:53:10] 2025-06-04 16:44:16,690 | INFO     | overall cleanup function is called
[2025-06-04 18:53:10] 2025-06-04 16:44:17,698 | INFO     | --- collectZombieJob: --- 10, [29498]
[2025-06-04 18:53:10] 2025-06-04 16:44:17,699 | INFO     | zombie collector waiting for pid 29498
[2025-06-04 18:53:10] 2025-06-04 16:44:17,699 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 18:53:10] 2025-06-04 16:44:17,699 | INFO     | collected zombie processes
[2025-06-04 18:53:10] 2025-06-04 16:44:17,699 | INFO     | will attempt to kill all subprocesses of pid=29498
[2025-06-04 18:53:10] 2025-06-04 16:44:17,815 | INFO     | process IDs to be killed: [29498] (in reverse order)
[2025-06-04 18:53:10] 2025-06-04 16:44:18,632 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 18:53:10] 2025-06-04 16:44:18,633 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 18:53:10] 2025-06-04 16:44:18,636 | INFO     | did not find any defunct processes belonging to 29498
[2025-06-04 18:53:10] 2025-06-04 16:44:18,643 | INFO     | did not find any defunct processes belonging to 29498
[2025-06-04 18:53:10] 2025-06-04 16:44:18,644 | INFO     | ready for new job
[2025-06-04 18:53:10] 2025-06-04 16:44:18,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 18:53:10] 2025-06-04 16:44:18,646 | INFO     | **************************************
[2025-06-04 18:53:10] 2025-06-04 16:44:18,646 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 18:53:10] 2025-06-04 16:44:18,646 | INFO     | **************************************
[2025-06-04 18:53:10] 2025-06-04 16:44:18,646 | INFO     | 
[2025-06-04 18:53:10] 2025-06-04 16:44:18,647 | INFO     | pilot is running in a VM
[2025-06-04 18:53:10] 2025-06-04 16:44:18,647 | INFO     | architecture information:
[2025-06-04 18:53:10] 2025-06-04 16:44:18,649 | INFO     | executing command: cat /etc/os-release
[2025-06-04 18:53:10] 2025-06-04 16:44:18,952 | INFO     | cat /etc/os-release:
[2025-06-04 18:53:10] NAME="CentOS Linux"
[2025-06-04 18:53:10] VERSION="7 (Core)"
[2025-06-04 18:53:10] ID="centos"
[2025-06-04 18:53:10] ID_LIKE="rhel fedora"
[2025-06-04 18:53:10] VERSION_ID="7"
[2025-06-04 18:53:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 18:53:10] ANSI_COLOR="0;31"
[2025-06-04 18:53:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 18:53:10] HOME_URL="https://www.centos.org/"
[2025-06-04 18:53:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 18:53:10] 
[2025-06-04 18:53:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 18:53:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 18:53:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 18:53:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 18:53:10] 
[2025-06-04 18:53:10] 2025-06-04 16:44:18,953 | INFO     | **************************************
[2025-06-04 18:53:10] 2025-06-04 16:44:19,457 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-06-04 18:53:10] 2025-06-04 16:44:19,641 | INFO     | sufficient remaining disk space (496354983936 B)
[2025-06-04 18:53:10] 2025-06-04 16:44:19,641 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 18:53:10] 2025-06-04 16:44:19,641 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 18:53:10] 2025-06-04 16:44:19,641 | INFO     | update_server=False
[2025-06-04 18:53:10] 2025-06-04 16:44:19,641 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 18:53:10] 2025-06-04 16:44:19,642 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 18:53:10] 2025-06-04 16:44:19,643 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 18:53:10] 2025-06-04 16:44:19,643 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 18:53:10] 2025-06-04 16:44:19,643 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 18:53:10] 2025-06-04 16:44:19,704 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:53:10] 2025-06-04 16:44:19,704 | INFO     | aborting loop
[2025-06-04 18:53:10] 2025-06-04 16:44:19,875 | INFO     | all job control threads have been joined
[2025-06-04 18:53:10] 2025-06-04 16:44:20,339 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 18:53:10] 2025-06-04 16:44:20,413 | INFO     | all payload control threads have been joined
[2025-06-04 18:53:10] 2025-06-04 16:44:20,648 | INFO     | [job] retrieve thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:20,665 | INFO     | all data control threads have been joined
[2025-06-04 18:53:10] 2025-06-04 16:44:20,710 | INFO     | [job] job monitor thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:20,764 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:20,878 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:20,882 | INFO     | [job] control thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:20,906 | INFO     | [data] copytool_in thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:20,931 | INFO     | [payload] failed_post thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:21,246 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 18:53:10] 2025-06-04 16:44:21,419 | INFO     | [payload] control thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:21,466 | INFO     | [payload] validate_post thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:21,672 | INFO     | [data] control thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:21,769 | INFO     | [job] validate thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:22,059 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:22,253 | INFO     | [job] queue monitor thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:22,347 | INFO     | [data] copytool_out thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:22,446 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 18:53:10] 2025-06-04 16:44:26,455 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:30,601 | INFO     | job.realtimelogging is not enabled
[2025-06-04 18:53:10] 2025-06-04 16:44:31,608 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 18:53:10] 2025-06-04 16:44:32,788 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139990902830912)>', '<ExcThread(monitor, started 139990457624320)>']
[2025-06-04 18:53:10] 2025-06-04 16:44:33,727 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 18:53:10] 2025-06-04 16:44:33,728 | INFO     | [monitor] control thread has ended
[2025-06-04 18:53:10] 2025-06-04 16:44:37,813 | INFO     | all workflow threads have been joined
[2025-06-04 18:53:10] 2025-06-04 16:44:37,814 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 18:53:10] 2025-06-04 16:44:37,814 | INFO     | traces error code: 0
[2025-06-04 18:53:10] 2025-06-04 16:44:37,814 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 18:53:10] 2025-06-04 16:44:38,183 [wrapper] ==== pilot stdout END ====
[2025-06-04 18:53:10] 2025-06-04 16:44:38,254 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 18:53:10] 2025-06-04 16:44:38,320 [wrapper] pilotpid: 20902
[2025-06-04 18:53:10] 2025-06-04 16:44:38,367 [wrapper] Pilot exit status: 0
[2025-06-04 18:53:10] 2025-06-04 16:44:38,736 [wrapper] pandaids: 6677975856
[2025-06-04 18:53:10] 2025-06-04 16:44:39,158 [wrapper] cleanup supervisor_pilot  8934 20903
[2025-06-04 18:53:10] 2025-06-04 16:44:39,218 [wrapper] Test setup, not cleaning
[2025-06-04 18:53:10] 2025-06-04 16:44:39,326 [wrapper] apfmon messages muted
[2025-06-04 18:53:10] 2025-06-04 16:44:39,384 [wrapper] ==== wrapper stdout END ====
[2025-06-04 18:53:10] 2025-06-04 16:44:39,477 [wrapper] ==== wrapper stderr END ====
[2025-06-04 18:53:10]  *** Error codes and diagnostics ***
[2025-06-04 18:53:10]     "exeErrorCode": 0,
[2025-06-04 18:53:10]     "exeErrorDiag": "",
[2025-06-04 18:53:10]     "pilotErrorCode": 0,
[2025-06-04 18:53:10]     "pilotErrorDiag": "",
[2025-06-04 18:53:10]  *** Listing of results directory ***
[2025-06-04 18:53:10] total 394460
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc    495897 Jun  3 20:57 pilot3.tar.gz
[2025-06-04 18:53:10] -rwx------. 1 boinc boinc     37140 Jun  3 20:58 runpilot2-wrapper.sh
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc      5111 Jun  3 20:58 queuedata.json
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc       100 Jun  4 12:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 18:53:10] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 12:50 run_atlas
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc       105 Jun  4 12:50 job.xml
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc      6392 Jun  4 12:50 init_data.xml
[2025-06-04 18:53:10] -rw-r--r--. 2 boinc boinc 216428484 Jun  4 12:50 EVNT.45006593._001722.pool.root.1
[2025-06-04 18:53:10] -rw-r--r--. 2 boinc boinc     15093 Jun  4 12:50 start_atlas.sh
[2025-06-04 18:53:10] drwxrwx--x. 2 boinc boinc        68 Jun  4 12:50 shared
[2025-06-04 18:53:10] -rw-r--r--. 2 boinc boinc    508874 Jun  4 12:50 input.tar.gz
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc         0 Jun  4 12:50 boinc_lockfile
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc      2522 Jun  4 14:40 pandaJob.out
[2025-06-04 18:53:10] -rw-------. 1 boinc boinc    986811 Jun  4 14:43 agis_schedconf.cvmfs.json
[2025-06-04 18:53:10] drwx------. 4 boinc boinc      4096 Jun  4 14:43 pilot3
[2025-06-04 18:53:10] -rw-------. 1 boinc boinc 180488623 Jun  4 18:41 HITS.45006595._042947.pool.root.1
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc       531 Jun  4 18:41 boinc_task_state.xml
[2025-06-04 18:53:10] -rw-------. 1 boinc boinc      1016 Jun  4 18:42 memory_monitor_summary.json
[2025-06-04 18:53:10] -rw-------. 1 boinc boinc   1598969 Jun  4 18:42 agis_ddmendpoints.agis.ALL.json
[2025-06-04 18:53:10] -rw-------. 1 boinc boinc    371442 Jun  4 18:42 log.45006595._042947.job.log.tgz.1
[2025-06-04 18:53:10] -rw-------. 1 boinc boinc        95 Jun  4 18:43 pilot_heartbeat.json
[2025-06-04 18:53:10] -rw-------. 1 boinc boinc      7686 Jun  4 18:44 heartbeat.json
[2025-06-04 18:53:10] -rw-------. 1 boinc boinc      4612 Jun  4 18:44 pilotlog.txt
[2025-06-04 18:53:10] -rw-------. 1 boinc boinc   1228040 Jun  4 18:44 log.45006595._042947.job.log.1
[2025-06-04 18:53:10] -rw-------. 1 boinc boinc       357 Jun  4 18:44 output.list
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc       620 Jun  4 18:44 runtime_log
[2025-06-04 18:53:10] -rw-------. 1 boinc boinc   1617920 Jun  4 18:44 result.tar.gz
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc      8673 Jun  4 18:44 runtime_log.err
[2025-06-04 18:53:10] -rw-------. 1 boinc boinc       657 Jun  4 18:44 qZqNDmh1lg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrmlKDmBzkbPn.diag
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc      8192 Jun  4 18:53 boinc_mmap_file
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc        28 Jun  4 18:53 wrapper_checkpoint.txt
[2025-06-04 18:53:10] -rw-r--r--. 1 boinc boinc     20504 Jun  4 18:53 stderr.txt
[2025-06-04 18:53:11] HITS file was successfully produced:
[2025-06-04 18:53:11] -rw-------. 1 boinc boinc 180488623 Jun  4 18:41 shared/HITS.pool.root.1
[2025-06-04 18:53:11]  *** Contents of shared directory: ***
[2025-06-04 18:53:11] total 389712
[2025-06-04 18:53:11] -rw-r--r--. 2 boinc boinc 216428484 Jun  4 12:50 ATLAS.root_0
[2025-06-04 18:53:11] -rw-r--r--. 2 boinc boinc     15093 Jun  4 12:50 start_atlas.sh
[2025-06-04 18:53:11] -rw-r--r--. 2 boinc boinc    508874 Jun  4 12:50 input.tar.gz
[2025-06-04 18:53:11] -rw-------. 1 boinc boinc 180488623 Jun  4 18:41 HITS.pool.root.1
[2025-06-04 18:53:11] -rw-------. 1 boinc boinc   1617920 Jun  4 18:44 result.tar.gz
18:53:12 (16054): run_atlas exited; CPU time 51317.836207
18:53:12 (16054): called boinc_finish(0)

</stderr_txt>
]]>

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